Wall clock time and date at job start Sun Mar 29 2020 22:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46713 * 2 1 4 4 O 1.21277 * 120.00427 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99704 * 180.02562 * 3 2 1 6 6 C 1.46502 * 119.99798 * 180.02562 * 5 3 2 7 7 H 1.08997 * 109.46244 * 324.99501 * 6 5 3 8 8 C 1.53038 * 109.46021 * 84.97010 * 6 5 3 9 9 C 1.53195 * 109.31243 * 181.38514 * 8 6 5 10 10 N 1.46921 * 108.77489 * 305.36682 * 9 8 6 11 11 C 1.36941 * 120.62946 * 233.62889 * 10 9 8 12 12 H 1.08007 * 120.00153 * 151.83811 * 11 10 9 13 13 C 1.38812 * 119.99962 * 331.83921 * 11 10 9 14 14 N 1.31613 * 120.00132 * 343.06174 * 13 11 10 15 15 Si 1.86803 * 120.00131 * 163.06854 * 13 11 10 16 16 H 1.48491 * 109.47308 * 89.99559 * 15 13 11 17 17 H 1.48494 * 109.47198 * 210.00339 * 15 13 11 18 18 H 1.48504 * 109.47014 * 329.99571 * 15 13 11 19 19 C 1.46920 * 118.74210 * 53.60541 * 10 9 8 20 20 C 1.53042 * 109.45883 * 205.02376 * 6 5 3 21 21 H 1.08997 * 109.49725 * 298.56158 * 20 6 5 22 22 C 1.52992 * 109.49745 * 58.66285 * 20 6 5 23 23 H 1.09000 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47491 * 60.00435 * 1 2 3 25 25 H 1.09002 * 109.47142 * 299.99630 * 1 2 3 26 26 H 1.09000 * 109.47213 * 120.00037 * 2 1 3 27 27 H 1.09002 * 109.47142 * 240.00370 * 2 1 3 28 28 H 0.96993 * 120.00262 * 359.97438 * 5 3 2 29 29 H 1.08995 * 109.49922 * 301.33217 * 8 6 5 30 30 H 1.08996 * 109.50078 * 61.43671 * 8 6 5 31 31 H 1.09006 * 109.58888 * 65.15173 * 9 8 6 32 32 H 1.08997 * 109.58872 * 185.43112 * 9 8 6 33 33 H 0.96996 * 120.00346 * 180.02562 * 14 13 11 34 34 H 1.09006 * 109.58722 * 66.17963 * 19 10 9 35 35 H 1.09002 * 109.58918 * 186.46219 * 19 10 9 36 36 H 1.09007 * 109.47339 * 59.99934 * 22 20 6 37 37 H 1.09000 * 109.47642 * 180.02562 * 22 20 6 38 38 H 1.09003 * 109.47191 * 299.99807 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3573 1.6671 -0.0005 6 6 3.8456 3.0484 0.0000 7 1 3.1727 3.6717 -0.5888 8 6 3.8970 3.5704 1.4377 9 6 4.3749 5.0259 1.4315 10 7 5.6563 5.0998 0.7165 11 6 6.7510 5.6756 1.3042 12 1 7.7442 5.3539 1.0276 13 6 6.5841 6.6726 2.2555 14 7 5.4305 7.2979 2.3581 15 14 7.9968 7.1270 3.3901 16 1 8.8069 8.2032 2.7654 17 1 7.4555 7.6046 4.6878 18 1 8.8510 5.9340 3.6193 19 6 5.7411 4.5438 -0.6408 20 6 5.2480 3.0937 -0.6110 21 1 5.9271 2.4907 -0.0083 22 6 5.2018 2.5409 -2.0368 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.9877 0.9300 -0.0005 29 1 2.9024 3.5161 1.8803 30 1 4.5889 2.9629 2.0209 31 1 3.6380 5.6504 0.9262 32 1 4.5056 5.3720 2.4567 33 1 5.3140 7.9948 3.0225 34 1 5.1156 5.1288 -1.3151 35 1 6.7753 4.5733 -0.9838 36 1 4.5236 3.1455 -2.6392 37 1 6.2009 2.5729 -2.4716 38 1 4.8481 1.5101 -2.0156 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941692984.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:20 Heat of formation + Delta-G solvation = -56.618951 kcal Electronic energy + Delta-G solvation = -18003.817670 eV Core-core repulsion = 15266.141230 eV Total energy + Delta-G solvation = -2737.676440 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.05417 -39.20925 -36.18793 -34.23126 -33.55110 -32.92946 -31.47139 -27.42712 -27.15912 -25.18243 -23.44149 -22.64669 -21.37316 -20.62244 -18.75858 -17.94180 -17.23820 -16.70141 -16.47799 -15.62795 -15.52459 -15.14769 -14.74490 -14.62543 -14.33260 -14.08347 -13.57642 -13.17890 -13.01611 -12.97255 -12.74120 -12.60091 -12.59329 -12.28835 -12.08625 -12.05923 -11.97610 -11.67133 -11.56810 -11.27994 -10.74593 -10.57737 -9.93995 -8.72360 -7.88752 -5.35676 1.46844 1.48432 1.58394 1.74801 2.31197 2.50735 3.27312 3.61280 3.75181 3.90650 4.03847 4.16864 4.27706 4.32252 4.37821 4.59449 4.70437 4.72230 4.80807 4.85418 4.92126 5.00858 5.02352 5.10174 5.10918 5.16801 5.29549 5.37550 5.37889 5.50684 5.61177 5.63280 5.67977 6.36611 6.69211 7.11509 7.39986 7.82305 8.35662 9.18424 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037747 B = 0.005870 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.606870 B = 4768.730714 C = 5173.586436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.134 4.134 3 C 0.498 3.502 4 O -0.596 6.596 5 N -0.710 5.710 6 C 0.167 3.833 7 H 0.050 0.950 8 C -0.131 4.131 9 C 0.183 3.817 10 N -0.609 5.609 11 C -0.265 4.265 12 H 0.074 0.926 13 C -0.053 4.053 14 N -0.939 5.939 15 Si 0.970 3.030 16 H -0.284 1.284 17 H -0.295 1.295 18 H -0.266 1.266 19 C 0.148 3.852 20 C -0.099 4.099 21 H 0.081 0.919 22 C -0.133 4.133 23 H 0.089 0.911 24 H 0.044 0.956 25 H 0.040 0.960 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.415 0.585 29 H 0.043 0.957 30 H 0.062 0.938 31 H -0.015 1.015 32 H 0.055 0.945 33 H 0.249 0.751 34 H 0.007 0.993 35 H 0.065 0.935 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 -17.935 -6.008 19.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.173 4.173 3 C 0.287 3.713 4 O -0.477 6.477 5 N -0.362 5.362 6 C 0.062 3.938 7 H 0.068 0.932 8 C -0.171 4.171 9 C 0.056 3.944 10 N -0.332 5.332 11 C -0.394 4.394 12 H 0.092 0.908 13 C -0.248 4.248 14 N -0.586 5.586 15 Si 0.798 3.202 16 H -0.210 1.210 17 H -0.222 1.222 18 H -0.190 1.190 19 C 0.022 3.978 20 C -0.120 4.120 21 H 0.099 0.901 22 C -0.191 4.191 23 H 0.107 0.893 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.135 0.865 27 H 0.141 0.859 28 H 0.252 0.748 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.004 0.996 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.025 0.975 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.226 -17.167 -5.919 18.443 hybrid contribution 0.590 0.910 0.822 1.361 sum -2.636 -16.257 -5.097 17.240 Atomic orbital electron populations 1.21537 0.93801 1.02583 1.01594 1.21695 0.97934 0.90917 1.06768 1.21710 0.81974 0.93199 0.74413 1.90695 1.56587 1.48701 1.51698 1.46069 1.07256 1.08382 1.74461 1.20607 0.95154 0.82866 0.95181 0.93156 1.22311 0.99345 0.98247 0.97230 1.20457 0.85607 0.91386 0.96957 1.44328 1.08358 1.67939 1.12557 1.19578 0.87406 1.13186 1.19276 0.90850 1.25885 0.99366 0.96248 1.03304 1.70211 1.26386 1.25380 1.36573 0.85239 0.78830 0.78201 0.77954 1.21025 1.22161 1.19044 1.21102 0.99095 0.91859 0.85728 1.21749 0.94451 0.97851 0.97936 0.90095 1.21709 1.02351 1.01127 0.93888 0.89267 0.93698 0.94120 0.86526 0.85934 0.74802 0.93790 0.91920 0.99644 0.92638 0.94150 0.97548 0.91615 0.93816 0.91170 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.20 71.98 0.66 -1.82 16 2 C -0.13 -2.13 6.42 29.85 0.19 -1.94 16 3 C 0.50 13.68 7.79 87.66 0.68 14.36 16 4 O -0.60 -23.13 15.64 -3.02 -0.05 -23.17 16 5 N -0.71 -18.03 4.36 -442.41 -1.93 -19.96 16 6 C 0.17 5.78 1.88 45.02 0.08 5.87 16 7 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 8 C -0.13 -5.41 5.65 30.67 0.17 -5.23 16 9 C 0.18 9.46 5.30 86.36 0.46 9.92 16 10 N -0.61 -31.24 2.99 -699.09 -2.09 -33.33 16 11 C -0.26 -14.64 9.58 84.03 0.81 -13.83 16 12 H 0.07 3.86 7.89 -2.91 -0.02 3.84 16 13 C -0.05 -3.00 4.92 84.86 0.42 -2.59 16 14 N -0.94 -57.47 11.19 21.65 0.24 -57.23 16 15 Si 0.97 45.13 29.59 68.60 2.03 47.16 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 17 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 19 C 0.15 6.11 5.80 86.36 0.50 6.61 16 20 C -0.10 -3.11 2.46 -10.72 -0.03 -3.14 16 21 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 22 C -0.13 -3.11 9.02 71.98 0.65 -2.46 16 23 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 25 H 0.04 0.90 8.10 -2.39 -0.02 0.88 16 26 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.41 7.23 8.31 -92.71 -0.77 6.46 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 32 H 0.06 3.22 6.06 -2.39 -0.01 3.21 16 33 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 35 H 0.07 2.57 7.93 -2.39 -0.02 2.55 16 36 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.37 7.36 -2.39 -0.02 1.35 16 Total: -1.00 -72.75 304.19 3.06 -69.69 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.25 Total: 11.10 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 4.60 Total: 5.74 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -3.78 Total: -110.52 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.05 Total: -23.17 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -72.75 3.06 -69.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941692984.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.071 kcal (2) G-P(sol) polarization free energy of solvation -72.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds