Wall clock time and date at job start Sun Mar 29 2020 22:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.47241 * 2 1 4 4 O 1.21287 * 119.99799 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00315 * 180.02562 * 3 2 1 6 6 C 1.46496 * 120.00435 * 179.97438 * 5 3 2 7 7 H 1.09007 * 109.45350 * 35.00048 * 6 5 3 8 8 C 1.53039 * 109.46271 * 275.03323 * 6 5 3 9 9 C 1.53192 * 109.31040 * 301.35443 * 8 6 5 10 10 N 1.46919 * 108.77664 * 305.36677 * 9 8 6 11 11 C 1.36944 * 120.63060 * 233.63060 * 10 9 8 12 12 H 1.08001 * 119.99599 * 152.78683 * 11 10 9 13 13 C 1.38811 * 119.99841 * 332.78756 * 11 10 9 14 14 N 1.31614 * 119.99655 * 159.75320 * 13 11 10 15 15 Si 1.86796 * 120.00061 * 339.75659 * 13 11 10 16 16 H 1.48499 * 109.47462 * 94.90141 * 15 13 11 17 17 H 1.48502 * 109.46840 * 214.90120 * 15 13 11 18 18 H 1.48502 * 109.47136 * 334.89800 * 15 13 11 19 19 C 1.46926 * 118.73779 * 53.60635 * 10 9 8 20 20 C 1.53037 * 109.45871 * 154.97329 * 6 5 3 21 21 H 1.09003 * 109.49633 * 178.59712 * 20 6 5 22 22 C 1.52998 * 109.49911 * 298.69190 * 20 6 5 23 23 H 1.08998 * 109.46823 * 59.99919 * 1 2 3 24 24 H 1.08997 * 109.46674 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46462 * 300.00087 * 1 2 3 26 26 H 1.08999 * 109.46845 * 240.00295 * 2 1 3 27 27 H 1.08997 * 109.47118 * 120.00542 * 2 1 3 28 28 H 0.96999 * 119.99251 * 0.02562 * 5 3 2 29 29 H 1.09002 * 109.49978 * 61.30313 * 8 6 5 30 30 H 1.08997 * 109.49662 * 181.37112 * 8 6 5 31 31 H 1.09007 * 109.58671 * 65.15787 * 9 8 6 32 32 H 1.08998 * 109.58489 * 185.58001 * 9 8 6 33 33 H 0.97000 * 120.00250 * 180.02562 * 14 13 11 34 34 H 1.09007 * 109.58755 * 66.18638 * 19 10 9 35 35 H 1.09009 * 109.58336 * 186.45953 * 19 10 9 36 36 H 1.08998 * 109.47103 * 60.00188 * 22 20 6 37 37 H 1.08996 * 109.47135 * 180.02562 * 22 20 6 38 38 H 1.09003 * 109.47060 * 300.00444 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6671 -0.0005 6 6 3.8459 3.0483 -0.0011 7 1 3.1733 3.6714 0.5885 8 6 3.8960 3.5708 -1.4386 9 6 4.8148 2.6723 -2.2725 10 7 6.1253 2.5939 -1.6128 11 6 7.2714 2.8928 -2.3002 12 1 8.1379 3.2609 -1.7709 13 6 7.3193 2.7228 -3.6770 14 7 8.2276 3.3576 -4.3872 15 14 6.0948 1.5932 -4.5218 16 1 4.9434 2.3911 -5.0144 17 1 6.7544 0.9165 -5.6673 18 1 5.6133 0.5738 -3.5552 19 6 6.1827 2.1891 -0.2016 20 6 5.2487 3.0932 0.6089 21 1 5.6228 4.1168 0.5860 22 6 5.1921 2.6018 2.0567 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9878 0.9298 -0.0013 29 1 2.8928 3.5605 -1.8647 30 1 4.2823 4.5900 -1.4420 31 1 4.3821 1.6745 -2.3454 32 1 4.9326 3.0955 -3.2700 33 1 8.2609 3.2392 -5.3493 34 1 5.8616 1.1518 -0.1056 35 1 7.2037 2.2911 0.1665 36 1 4.8194 1.5778 2.0784 37 1 6.1914 2.6344 2.4908 38 1 4.5251 3.2435 2.6323 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941692985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:22 Heat of formation + Delta-G solvation = -49.095700 kcal Electronic energy + Delta-G solvation = -18431.303983 eV Core-core repulsion = 15693.953776 eV Total energy + Delta-G solvation = -2737.350207 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.28018 -39.32920 -36.08900 -34.09258 -33.54802 -33.39114 -31.77477 -27.80004 -27.16368 -25.26457 -23.51933 -23.15034 -21.39546 -20.26092 -18.79408 -18.22273 -17.26379 -16.71279 -16.51950 -15.99690 -15.43174 -15.30453 -15.14306 -14.77853 -14.22070 -14.18491 -13.88433 -13.48445 -13.17564 -13.07524 -12.89707 -12.81142 -12.60614 -12.25959 -12.10246 -12.00549 -11.90934 -11.65519 -11.42318 -11.28122 -10.78802 -10.73020 -9.98095 -8.92594 -8.17083 -5.48655 1.29829 1.38207 1.47431 1.72745 2.32985 2.40763 3.03283 3.33472 3.70274 3.88504 3.94802 4.07822 4.21793 4.26014 4.29790 4.40852 4.55670 4.57289 4.71838 4.78090 4.87292 4.93210 4.94271 5.01318 5.04012 5.08926 5.16079 5.22357 5.30467 5.35447 5.48029 5.63778 5.85961 6.12640 6.64024 6.90489 7.33658 7.61680 8.01953 9.02650 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025656 B = 0.008408 C = 0.007026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.091207 B = 3329.190378 C = 3984.414174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.141 4.141 3 C 0.504 3.496 4 O -0.589 6.589 5 N -0.712 5.712 6 C 0.167 3.833 7 H 0.077 0.923 8 C -0.140 4.140 9 C 0.131 3.869 10 N -0.617 5.617 11 C -0.245 4.245 12 H 0.055 0.945 13 C -0.035 4.035 14 N -0.958 5.958 15 Si 0.945 3.055 16 H -0.289 1.289 17 H -0.312 1.312 18 H -0.251 1.251 19 C 0.151 3.849 20 C -0.109 4.109 21 H 0.071 0.929 22 C -0.132 4.132 23 H 0.041 0.959 24 H 0.085 0.915 25 H 0.050 0.950 26 H 0.106 0.894 27 H 0.121 0.879 28 H 0.409 0.591 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.040 0.960 33 H 0.260 0.740 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.972 -8.419 12.447 19.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.180 4.180 3 C 0.293 3.707 4 O -0.469 6.469 5 N -0.365 5.365 6 C 0.061 3.939 7 H 0.095 0.905 8 C -0.180 4.180 9 C 0.006 3.994 10 N -0.341 5.341 11 C -0.374 4.374 12 H 0.073 0.927 13 C -0.230 4.230 14 N -0.604 5.604 15 Si 0.775 3.225 16 H -0.216 1.216 17 H -0.241 1.241 18 H -0.175 1.175 19 C 0.026 3.974 20 C -0.129 4.129 21 H 0.090 0.910 22 C -0.190 4.190 23 H 0.060 0.940 24 H 0.104 0.896 25 H 0.069 0.931 26 H 0.124 0.876 27 H 0.139 0.861 28 H 0.246 0.754 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.437 -7.761 12.330 19.156 hybrid contribution 0.238 -0.206 -1.186 1.227 sum -12.199 -7.967 11.145 18.344 Atomic orbital electron populations 1.21509 0.93291 1.02535 1.01827 1.21714 0.98354 0.91635 1.06337 1.21482 0.81858 0.92969 0.74408 1.90658 1.56276 1.48219 1.51795 1.46153 1.07222 1.08838 1.74243 1.20677 0.95187 0.83293 0.94708 0.90457 1.22287 0.98691 0.99903 0.97138 1.21224 0.85787 0.97130 0.95270 1.44451 1.01056 1.79393 1.09190 1.18881 0.92374 1.35773 0.90418 0.92682 1.25877 0.99213 1.00584 0.97337 1.69962 1.39725 1.44368 1.06349 0.85931 0.78159 0.80725 0.77712 1.21639 1.24125 1.17451 1.21162 0.98531 0.95671 0.82039 1.21790 0.93731 1.01178 0.96219 0.91019 1.21681 1.02429 1.01661 0.93246 0.93978 0.89646 0.93105 0.87570 0.86102 0.75396 0.92449 0.91871 0.94619 0.94145 0.93078 0.93753 0.92055 0.91568 0.91543 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.20 71.98 0.66 -1.74 16 2 C -0.14 -2.43 6.42 29.85 0.19 -2.24 16 3 C 0.50 13.30 7.79 87.66 0.68 13.99 16 4 O -0.59 -20.41 15.65 -3.05 -0.05 -20.46 16 5 N -0.71 -18.25 3.60 -442.40 -1.59 -19.84 16 6 C 0.17 4.98 2.21 45.02 0.10 5.08 16 7 H 0.08 2.39 7.58 -2.38 -0.02 2.37 16 8 C -0.14 -5.09 5.77 30.67 0.18 -4.91 16 9 C 0.13 5.51 3.93 86.36 0.34 5.85 16 10 N -0.62 -27.53 2.77 -699.09 -1.94 -29.47 16 11 C -0.24 -13.55 10.04 84.03 0.84 -12.70 16 12 H 0.06 3.32 8.05 -2.91 -0.02 3.30 16 13 C -0.04 -2.06 5.24 84.86 0.44 -1.61 16 14 N -0.96 -60.20 13.97 21.65 0.30 -59.90 16 15 Si 0.95 46.41 24.35 68.60 1.67 48.08 16 16 H -0.29 -13.97 6.70 99.48 0.67 -13.30 16 17 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 18 H -0.25 -11.30 6.45 99.48 0.64 -10.66 16 19 C 0.15 5.12 5.50 86.36 0.48 5.60 16 20 C -0.11 -3.08 2.67 -10.72 -0.03 -3.11 16 21 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 22 C -0.13 -2.75 9.05 71.98 0.65 -2.10 16 23 H 0.04 0.90 8.10 -2.39 -0.02 0.88 16 24 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 26 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.41 9.04 6.73 -92.71 -0.62 8.41 16 29 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.04 1.43 6.58 -2.38 -0.02 1.42 16 32 H 0.04 1.95 4.49 -2.39 -0.01 1.94 16 33 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 34 H 0.04 1.31 6.64 -2.38 -0.02 1.30 16 35 H 0.06 2.15 7.93 -2.38 -0.02 2.13 16 36 H 0.07 1.20 7.54 -2.39 -0.02 1.18 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -69.78 293.62 3.24 -66.54 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.31 Total: 12.94 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 4.54 Total: 2.11 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -3.23 Total: -109.21 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.05 Total: -20.46 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.67 Total: 48.08 kcal Total: -69.78 3.24 -66.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941692985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.441 kcal (2) G-P(sol) polarization free energy of solvation -69.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds