Wall clock time and date at job start Sun Mar 29 2020 22:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47377 * 2 1 4 4 O 1.21280 * 119.99914 * 0.02562 * 3 2 1 5 5 N 1.34783 * 120.00142 * 180.02562 * 3 2 1 6 6 C 1.46493 * 119.99943 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.46359 * 35.02580 * 6 5 3 8 8 C 1.53043 * 109.45179 * 275.05838 * 6 5 3 9 9 C 1.52765 * 109.38080 * 301.22966 * 8 6 5 10 10 N 1.46922 * 109.00869 * 305.58495 * 9 8 6 11 11 C 1.36940 * 120.63034 * 233.58321 * 10 9 8 12 12 H 1.07998 * 119.99798 * 149.97586 * 11 10 9 13 13 C 1.38810 * 119.99822 * 330.25114 * 11 10 9 14 14 N 1.31613 * 119.99993 * 344.24279 * 13 11 10 15 15 Si 1.86797 * 119.99729 * 164.23873 * 13 11 10 16 16 H 1.48498 * 109.47286 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47054 * 120.00186 * 15 13 11 18 18 H 1.48509 * 109.47234 * 239.99943 * 15 13 11 19 19 C 1.46923 * 118.73869 * 53.31150 * 10 9 8 20 20 H 1.08999 * 109.59296 * 66.57034 * 19 10 9 21 21 C 1.53004 * 109.58930 * 186.85785 * 19 10 9 22 22 C 1.53045 * 109.46231 * 154.99883 * 6 5 3 23 23 H 1.08997 * 109.46999 * 59.99445 * 1 2 3 24 24 H 1.08999 * 109.47443 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46920 * 300.00019 * 1 2 3 26 26 H 1.09000 * 109.46904 * 239.99569 * 2 1 3 27 27 H 1.09005 * 109.46955 * 119.99715 * 2 1 3 28 28 H 0.96994 * 119.99810 * 359.97438 * 5 3 2 29 29 H 1.09006 * 109.49539 * 61.30037 * 8 6 5 30 30 H 1.08994 * 109.50096 * 181.37236 * 8 6 5 31 31 H 1.09003 * 109.50587 * 185.70073 * 9 8 6 32 32 H 1.08998 * 109.42865 * 65.41864 * 9 8 6 33 33 H 0.97006 * 120.00035 * 179.97438 * 14 13 11 34 34 H 1.09001 * 109.46923 * 59.99638 * 21 19 10 35 35 H 1.08992 * 109.47317 * 179.97438 * 21 19 10 36 36 H 1.09001 * 109.46661 * 299.99948 * 21 19 10 37 37 H 1.09002 * 109.49492 * 298.69333 * 22 6 5 38 38 H 1.08993 * 109.49934 * 178.59194 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8458 3.0482 -0.0011 7 1 3.1737 3.6713 0.5888 8 6 3.8953 3.5707 -1.4387 9 6 4.8133 2.6776 -2.2714 10 7 6.1245 2.5939 -1.6140 11 6 7.2702 2.8929 -2.3019 12 1 8.1232 3.3000 -1.7793 13 6 7.3333 2.6781 -3.6719 14 7 6.4370 1.9148 -4.2602 15 14 8.6901 3.4726 -4.6803 16 1 9.5631 4.2776 -3.7885 17 1 9.4974 2.4169 -5.3427 18 1 8.0882 4.3556 -5.7115 19 6 6.1828 2.1892 -0.2028 20 1 5.8642 1.1512 -0.1068 21 6 7.6153 2.3359 0.3142 22 6 5.2490 3.0931 0.6083 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 3.9878 0.9297 -0.0005 29 1 2.8918 3.5603 -1.8643 30 1 4.2815 4.5899 -1.4423 31 1 4.9304 3.1042 -3.2676 32 1 4.3783 1.6810 -2.3472 33 1 6.4808 1.7650 -5.2176 34 1 7.9301 3.3754 0.2221 35 1 7.6562 2.0357 1.3612 36 1 8.2800 1.7016 -0.2723 37 1 5.2091 2.7429 1.6397 38 1 5.6230 4.1167 0.5853 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946936721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:29 Heat of formation + Delta-G solvation = -31.464915 kcal Electronic energy + Delta-G solvation = -18312.299956 eV Core-core repulsion = 15575.714277 eV Total energy + Delta-G solvation = -2736.585679 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.71303 -37.68201 -34.25636 -32.70731 -32.30109 -31.06388 -29.56519 -26.42829 -25.10684 -24.18421 -21.98982 -20.67457 -20.22637 -18.59599 -16.91562 -16.39065 -15.51533 -15.19655 -14.97133 -14.08946 -13.92629 -13.67697 -13.45801 -13.08161 -12.60905 -12.50654 -12.22040 -11.75751 -11.65593 -11.40032 -11.20053 -11.08165 -11.00689 -10.69372 -10.62687 -10.38773 -10.14002 -10.07403 -9.66901 -9.45779 -9.28681 -8.54207 -8.46132 -6.63378 -5.78792 -3.22930 3.00206 3.36065 3.44518 3.45820 3.62123 4.48018 4.96522 5.17456 5.20477 5.31808 5.35946 5.42368 5.63225 5.67516 5.70545 5.84422 6.00834 6.01425 6.11680 6.24180 6.27700 6.31018 6.38942 6.45167 6.58661 6.65769 6.79782 6.96920 7.04686 7.06906 7.38524 7.67604 7.81978 7.93724 8.45765 8.61670 9.21304 9.85028 10.41933 11.29494 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031698 B = 0.006849 C = 0.006240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.118996 B = 4087.342032 C = 4486.324995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.147 4.147 3 C 0.509 3.491 4 O -0.553 6.553 5 N -0.715 5.715 6 C 0.153 3.847 7 H 0.070 0.930 8 C -0.153 4.153 9 C 0.177 3.823 10 N -0.587 5.587 11 C -0.251 4.251 12 H 0.069 0.931 13 C 0.003 3.997 14 N -0.902 5.902 15 Si 0.899 3.101 16 H -0.278 1.278 17 H -0.291 1.291 18 H -0.290 1.290 19 C 0.169 3.831 20 H 0.020 0.980 21 C -0.137 4.137 22 C -0.138 4.138 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.401 0.599 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.017 0.983 33 H 0.252 0.748 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.288 -2.972 9.074 10.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.187 4.187 3 C 0.296 3.704 4 O -0.432 6.432 5 N -0.366 5.366 6 C 0.049 3.951 7 H 0.089 0.911 8 C -0.193 4.193 9 C 0.051 3.949 10 N -0.310 5.310 11 C -0.380 4.380 12 H 0.087 0.913 13 C -0.195 4.195 14 N -0.546 5.546 15 Si 0.729 3.271 16 H -0.203 1.203 17 H -0.218 1.218 18 H -0.216 1.216 19 C 0.062 3.938 20 H 0.038 0.962 21 C -0.194 4.194 22 C -0.178 4.178 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.236 0.764 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.827 -2.347 8.899 10.893 hybrid contribution 1.012 0.005 -0.713 1.238 sum -4.815 -2.342 8.186 9.781 Atomic orbital electron populations 1.21494 0.93389 1.01105 1.03163 1.21632 0.98344 0.94490 1.04195 1.20680 0.82464 0.91523 0.75758 1.90651 1.55481 1.46609 1.50445 1.46191 1.06756 1.09518 1.74181 1.20857 0.94663 0.82068 0.97526 0.91148 1.22477 1.00287 1.00912 0.95669 1.20593 0.83138 0.95273 0.95895 1.44119 1.02730 1.78301 1.05879 1.19196 0.93329 1.35161 0.90328 0.91299 1.25082 0.98077 0.98194 0.98190 1.70033 1.36954 1.37911 1.09716 0.86275 0.81587 0.78865 0.80345 1.20272 1.21794 1.21649 1.20380 0.93264 0.93964 0.86232 0.96245 1.21806 0.97388 1.02073 0.98179 1.22361 0.94925 1.02302 0.98232 0.92032 0.92458 0.92266 0.88906 0.89352 0.76404 0.92850 0.91962 0.89865 0.96455 0.93787 0.92727 0.94340 0.91921 0.92682 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.20 37.16 0.34 -1.19 16 2 C -0.15 -1.75 6.42 -27.89 -0.18 -1.92 16 3 C 0.51 8.22 7.79 -10.98 -0.09 8.13 16 4 O -0.55 -10.83 15.64 5.56 0.09 -10.74 16 5 N -0.71 -11.51 4.27 -53.77 -0.23 -11.74 16 6 C 0.15 2.69 2.78 -67.89 -0.19 2.50 16 7 H 0.07 1.26 7.58 -51.93 -0.39 0.87 16 8 C -0.15 -3.09 5.75 -26.83 -0.15 -3.24 16 9 C 0.18 4.15 5.00 -3.93 -0.02 4.13 16 10 N -0.59 -13.88 2.99 -165.03 -0.49 -14.37 16 11 C -0.25 -6.56 8.57 -15.06 -0.13 -6.68 16 12 H 0.07 1.77 6.24 -52.49 -0.33 1.44 16 13 C 0.00 0.09 4.93 -17.43 -0.09 0.00 16 14 N -0.90 -25.71 11.24 55.49 0.62 -25.09 16 15 Si 0.90 21.39 29.58 -169.99 -5.03 16.36 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 19 C 0.17 3.25 3.20 -67.60 -0.22 3.03 16 20 H 0.02 0.38 6.65 -51.93 -0.35 0.04 16 21 C -0.14 -2.44 7.95 37.16 0.30 -2.15 16 22 C -0.14 -2.31 5.07 -26.61 -0.13 -2.45 16 23 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.40 6.03 6.87 -40.82 -0.28 5.75 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.08 2.24 6.15 -51.93 -0.32 1.92 16 32 H 0.02 0.43 7.74 -51.93 -0.40 0.02 16 33 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.05 1.00 7.44 -51.93 -0.39 0.61 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 1.21 7.63 -51.93 -0.40 0.82 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 297.65 15.07 4.49 4.49 Total: -1.00 -30.06 297.65 -7.32 -37.38 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.21 Total: 3.55 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -0.56 Total: 0.17 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.10 Total: -51.20 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.06 -7.32 -37.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946936721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.914 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds