Wall clock time and date at job start Sun Mar 29 2020 22:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47418 * 2 1 4 4 O 1.21288 * 119.99910 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00435 * 179.97438 * 3 2 1 6 6 C 1.46507 * 119.99978 * 179.97438 * 5 3 2 7 7 H 1.08994 * 109.49350 * 35.01020 * 6 5 3 8 8 C 1.53192 * 109.50089 * 274.93898 * 6 5 3 9 9 N 1.46994 * 108.73816 * 185.41047 * 8 6 5 10 10 C 1.36932 * 120.61394 * 233.56654 * 9 8 6 11 11 H 1.08001 * 120.00191 * 27.70336 * 10 9 8 12 12 C 1.38812 * 119.99778 * 207.69622 * 10 9 8 13 13 N 1.31622 * 120.00239 * 17.36071 * 12 10 9 14 14 Si 1.86800 * 119.99938 * 197.35968 * 12 10 9 15 15 H 1.48497 * 109.47293 * 90.00006 * 14 12 10 16 16 H 1.48504 * 109.47426 * 210.00223 * 14 12 10 17 17 H 1.48503 * 109.47207 * 330.00294 * 14 12 10 18 18 C 1.46931 * 118.75363 * 53.59307 * 9 8 6 19 19 C 1.53190 * 108.77525 * 306.38954 * 18 9 8 20 20 C 1.53045 * 109.49271 * 155.06897 * 6 5 3 21 21 H 1.08996 * 109.46020 * 61.34351 * 20 6 5 22 22 C 1.52999 * 109.46154 * 301.37209 * 20 6 5 23 23 H 1.08994 * 109.47116 * 300.00325 * 1 2 3 24 24 H 1.08996 * 109.46983 * 59.99907 * 1 2 3 25 25 H 1.09005 * 109.47237 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47169 * 239.99594 * 2 1 3 27 27 H 1.09005 * 109.47190 * 120.00059 * 2 1 3 28 28 H 0.96998 * 120.00320 * 0.02562 * 5 3 2 29 29 H 1.09008 * 109.58580 * 305.16914 * 8 6 5 30 30 H 1.08997 * 109.58404 * 65.59142 * 8 6 5 31 31 H 0.97001 * 119.99954 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.58676 * 186.60193 * 18 9 8 33 33 H 1.09005 * 109.58746 * 66.17358 * 18 9 8 34 34 H 1.09004 * 109.50021 * 294.68847 * 19 18 9 35 35 H 1.08997 * 109.49962 * 174.58721 * 19 18 9 36 36 H 1.08999 * 109.47256 * 59.99889 * 22 20 6 37 37 H 1.09001 * 109.47192 * 180.02562 * 22 20 6 38 38 H 1.09004 * 109.47044 * 300.00365 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6670 0.0005 6 6 3.8457 3.0483 0.0000 7 1 3.1732 3.6721 0.5887 8 6 3.8997 3.5711 -1.4390 9 7 4.5123 4.9072 -1.4334 10 6 3.8739 5.9696 -2.0155 11 1 2.7959 5.9827 -2.0795 12 6 4.6123 7.0298 -2.5231 13 7 5.8983 6.8818 -2.7613 14 14 3.7808 8.6666 -2.8681 15 1 3.8505 9.5223 -1.6564 16 1 4.4718 9.3453 -3.9938 17 1 2.3591 8.4334 -3.2283 18 6 5.8228 5.0812 -0.7919 19 6 5.7467 4.5411 0.6395 20 6 5.2491 3.0941 0.6088 21 1 5.9266 2.4901 0.0053 22 6 5.2047 2.5399 2.0342 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9878 0.9298 0.0005 29 1 4.4994 2.8968 -2.0505 30 1 2.8894 3.6332 -1.8433 31 1 6.4141 7.6225 -3.1164 32 1 6.0810 6.1400 -0.7698 33 1 6.5792 4.5300 -1.3507 34 1 5.0562 5.1509 1.2223 35 1 6.7365 4.5758 1.0946 36 1 4.8515 1.5090 2.0124 37 1 6.2041 2.5729 2.4681 38 1 4.5268 3.1435 2.6377 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964530964.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:36 Heat of formation + Delta-G solvation = -34.704006 kcal Electronic energy + Delta-G solvation = -18085.362828 eV Core-core repulsion = 15348.636692 eV Total energy + Delta-G solvation = -2736.726137 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.69589 -37.66013 -34.43011 -33.00484 -32.58281 -31.05941 -28.93474 -27.30819 -24.59025 -23.84531 -21.93666 -20.99941 -20.00835 -19.20938 -16.84216 -16.76668 -15.60567 -15.40469 -14.67778 -13.97751 -13.88563 -13.59910 -13.43551 -13.18551 -12.85846 -12.56475 -12.27922 -11.93802 -11.73378 -11.59800 -11.47285 -11.16999 -10.99524 -10.78876 -10.62338 -10.23914 -10.12402 -9.88621 -9.80084 -9.60165 -9.35887 -8.73328 -8.35967 -6.64480 -5.75487 -3.17375 2.94222 3.42337 3.47216 3.49100 3.53049 4.54741 4.86712 5.07478 5.09471 5.16022 5.31167 5.40939 5.48840 5.55668 5.64634 5.75017 5.91581 5.93613 5.99452 6.10417 6.20352 6.22079 6.26025 6.31201 6.59659 6.65825 6.74251 6.77012 6.87123 7.05856 7.38215 7.67056 7.83967 7.86265 8.47544 8.57335 9.25331 9.87626 10.43385 11.33199 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025867 B = 0.006991 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.212767 B = 4004.164113 C = 4784.674294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.144 4.144 3 C 0.505 3.495 4 O -0.539 6.539 5 N -0.723 5.723 6 C 0.132 3.868 7 H 0.085 0.915 8 C 0.142 3.858 9 N -0.588 5.588 10 C -0.249 4.249 11 H 0.067 0.933 12 C 0.002 3.998 13 N -0.905 5.905 14 Si 0.903 3.097 15 H -0.287 1.287 16 H -0.291 1.291 17 H -0.278 1.278 18 C 0.167 3.833 19 C -0.134 4.134 20 C -0.091 4.091 21 H 0.066 0.934 22 C -0.143 4.143 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.394 0.606 29 H 0.016 0.984 30 H 0.057 0.943 31 H 0.253 0.747 32 H 0.089 0.911 33 H 0.018 0.982 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.178 -13.646 7.646 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.291 3.709 4 O -0.416 6.416 5 N -0.374 5.374 6 C 0.026 3.974 7 H 0.103 0.897 8 C 0.014 3.986 9 N -0.311 5.311 10 C -0.379 4.379 11 H 0.084 0.916 12 C -0.196 4.196 13 N -0.549 5.549 14 Si 0.733 3.267 15 H -0.214 1.214 16 H -0.218 1.218 17 H -0.204 1.204 18 C 0.042 3.958 19 C -0.173 4.173 20 C -0.110 4.110 21 H 0.084 0.916 22 C -0.201 4.201 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.227 0.773 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.036 0.964 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.650 -12.827 7.552 15.120 hybrid contribution 0.085 0.436 -0.217 0.494 sum -2.565 -12.391 7.336 14.627 Atomic orbital electron populations 1.21510 0.93308 1.01113 1.03441 1.21628 0.98515 0.94428 1.03872 1.20698 0.82491 0.91519 0.76193 1.90726 1.55229 1.46470 1.49131 1.46171 1.06750 1.09353 1.75122 1.21733 0.94625 0.81030 0.99990 0.89738 1.21201 0.97498 0.87809 0.92045 1.44016 1.19757 1.03247 1.64037 1.19247 0.90740 0.96332 1.31581 0.91561 1.25013 0.96115 0.99820 0.98680 1.70042 1.06749 1.30789 1.47352 0.86272 0.78904 0.84103 0.77442 1.21417 1.21789 1.20379 1.20847 0.86463 1.01565 0.86967 1.22249 0.99444 0.94033 1.01617 1.21303 0.95824 0.98451 0.95439 0.91556 1.21845 1.01115 1.00133 0.96972 0.92107 0.91913 0.92469 0.89200 0.89411 0.77326 0.96600 0.92446 0.93695 0.89250 0.96366 0.92460 0.92771 0.93419 0.93027 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.20 37.16 0.34 -1.10 16 2 C -0.14 -1.47 6.42 -27.89 -0.18 -1.65 16 3 C 0.51 7.66 7.80 -10.99 -0.09 7.57 16 4 O -0.54 -10.81 15.65 5.55 0.09 -10.73 16 5 N -0.72 -10.34 4.37 -53.69 -0.23 -10.58 16 6 C 0.13 2.39 2.06 -67.80 -0.14 2.25 16 7 H 0.08 1.79 7.58 -51.93 -0.39 1.40 16 8 C 0.14 3.16 6.10 -3.67 -0.02 3.14 16 9 N -0.59 -15.17 3.00 -172.26 -0.52 -15.69 16 10 C -0.25 -7.13 9.59 -15.06 -0.14 -7.27 16 11 H 0.07 1.92 7.89 -52.49 -0.41 1.50 16 12 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 13 N -0.90 -26.56 11.19 55.49 0.62 -25.94 16 14 Si 0.90 22.34 29.59 -169.99 -5.03 17.31 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 18 C 0.17 3.99 5.31 -3.71 -0.02 3.97 16 19 C -0.13 -2.52 5.36 -26.61 -0.14 -2.66 16 20 C -0.09 -1.47 2.27 -90.57 -0.21 -1.68 16 21 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 22 C -0.14 -1.88 9.02 37.16 0.34 -1.54 16 23 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 24 H 0.06 0.76 8.10 -51.93 -0.42 0.33 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.39 4.31 8.31 -40.82 -0.34 3.97 16 29 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.06 1.38 7.93 -51.93 -0.41 0.97 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.54 7.36 -51.93 -0.38 0.16 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 304.17 15.07 4.58 4.58 Total: -1.00 -32.22 304.17 -7.29 -39.51 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.46 Total: 0.52 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -0.35 Total: 1.00 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.13 Total: -52.20 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.22 -7.29 -39.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964530964.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.810 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds