Wall clock time and date at job start Sun Mar 29 2020 22:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47513 * 2 1 4 4 O 1.21288 * 119.99765 * 0.27501 * 3 2 1 5 5 N 1.34776 * 120.00119 * 180.02562 * 3 2 1 6 6 C 1.46506 * 119.99980 * 179.97438 * 5 3 2 7 7 H 1.09004 * 110.88421 * 37.42376 * 6 5 3 8 8 C 1.54909 * 111.00429 * 273.54608 * 6 5 3 9 9 N 1.47421 * 104.82827 * 278.93522 * 8 6 5 10 10 C 1.36939 * 125.64875 * 155.91277 * 9 8 6 11 11 H 1.08006 * 119.99802 * 342.01554 * 10 9 8 12 12 C 1.38807 * 120.00108 * 162.02887 * 10 9 8 13 13 N 1.31622 * 120.00079 * 156.31249 * 12 10 9 14 14 Si 1.86797 * 120.00153 * 336.30111 * 12 10 9 15 15 H 1.48503 * 109.46902 * 84.68229 * 14 12 10 16 16 H 1.48498 * 109.47332 * 204.68127 * 14 12 10 17 17 H 1.48500 * 109.47435 * 324.68381 * 14 12 10 18 18 C 1.47023 * 108.70484 * 335.86889 * 9 8 6 19 19 C 1.54320 * 107.27072 * 1.06134 * 18 9 8 20 20 C 1.52996 * 110.72154 * 263.82761 * 19 18 9 21 21 C 1.53008 * 110.71814 * 140.55163 * 19 18 9 22 22 H 1.08999 * 109.46997 * 59.99748 * 1 2 3 23 23 H 1.09005 * 109.47477 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.47321 * 300.00166 * 1 2 3 25 25 H 1.08997 * 109.46703 * 239.99636 * 2 1 3 26 26 H 1.08999 * 109.46997 * 120.00252 * 2 1 3 27 27 H 0.96993 * 120.00160 * 359.97438 * 5 3 2 28 28 H 1.09004 * 110.36830 * 37.77203 * 8 6 5 29 29 H 1.08997 * 110.36372 * 159.98704 * 8 6 5 30 30 H 0.97005 * 119.99752 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.87859 * 120.47946 * 18 9 8 32 32 H 1.08999 * 109.88369 * 241.63965 * 18 9 8 33 33 H 1.09003 * 109.47190 * 173.52259 * 20 19 18 34 34 H 1.08998 * 109.47439 * 293.52267 * 20 19 18 35 35 H 1.09004 * 109.47204 * 53.52401 * 20 19 18 36 36 H 1.08996 * 109.46911 * 306.47968 * 21 19 18 37 37 H 1.09004 * 109.46656 * 66.48247 * 21 19 18 38 38 H 1.09000 * 109.46633 * 186.48148 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2442 2.3426 0.0050 5 7 3.3575 1.6669 -0.0005 6 6 3.8459 3.0482 -0.0011 7 1 3.2131 3.6843 0.6178 8 6 3.9462 3.6011 -1.4447 9 7 5.2217 3.0741 -1.9628 10 6 5.5322 2.8918 -3.2840 11 1 4.7460 2.8581 -4.0238 12 6 6.8573 2.7503 -3.6724 13 7 7.1511 2.1307 -4.7960 14 14 8.2235 3.4392 -2.6009 15 1 8.5692 2.4537 -1.5452 16 1 9.4204 3.7089 -3.4374 17 1 7.7669 4.7027 -1.9682 18 6 6.1058 2.7775 -0.8261 19 6 5.3253 3.1152 0.4617 20 6 5.6754 4.5208 0.9540 21 6 5.5998 2.0748 1.5496 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8932 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.9877 0.9297 -0.0005 28 1 3.1134 3.2397 -2.0480 29 1 3.9606 4.6909 -1.4333 30 1 8.0771 2.0321 -5.0676 31 1 6.3739 1.7210 -0.8308 32 1 7.0051 3.3905 -0.8860 33 1 5.0316 4.7825 1.7939 34 1 6.7172 4.5449 1.2735 35 1 5.5266 5.2366 0.1455 36 1 5.3981 1.0778 1.1580 37 1 6.6429 2.1396 1.8592 38 1 4.9538 2.2662 2.4064 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972705074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:32 Heat of formation + Delta-G solvation = -41.182541 kcal Electronic energy + Delta-G solvation = -18402.401887 eV Core-core repulsion = 15665.394820 eV Total energy + Delta-G solvation = -2737.007067 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.34040 -39.62282 -35.73432 -34.46621 -33.56365 -33.36538 -30.08605 -28.16152 -27.67019 -25.97531 -24.40306 -22.36160 -21.09709 -20.32566 -19.10708 -18.00940 -17.47230 -16.99948 -16.49317 -15.75016 -15.36179 -15.29058 -15.08961 -14.59829 -14.22250 -14.01438 -13.69390 -13.43228 -13.38673 -13.01531 -12.97093 -12.89569 -12.60565 -12.55417 -12.33530 -11.99533 -11.84992 -11.75756 -11.65611 -11.19919 -10.79821 -10.78325 -10.03604 -9.07048 -8.21421 -5.46412 1.26455 1.36739 1.46783 1.71299 2.29984 2.38083 2.99214 3.28819 3.40832 3.73108 3.86546 3.92726 4.24600 4.26101 4.28863 4.35030 4.51316 4.63147 4.72032 4.78321 4.82112 4.83558 4.92733 4.99275 5.02461 5.03480 5.09863 5.16927 5.28579 5.35871 5.43020 5.59934 5.64044 6.06234 6.61906 6.73243 7.32487 7.50329 8.06514 8.98976 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026075 B = 0.008272 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.559430 B = 3384.163417 C = 3960.269029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.139 4.139 3 C 0.505 3.495 4 O -0.589 6.589 5 N -0.705 5.705 6 C 0.152 3.848 7 H 0.103 0.897 8 C 0.121 3.879 9 N -0.619 5.619 10 C -0.236 4.236 11 H 0.052 0.948 12 C -0.034 4.034 13 N -0.954 5.954 14 Si 0.953 3.047 15 H -0.265 1.265 16 H -0.311 1.311 17 H -0.275 1.275 18 C 0.121 3.879 19 C -0.075 4.075 20 C -0.133 4.133 21 C -0.128 4.128 22 H 0.039 0.961 23 H 0.086 0.914 24 H 0.053 0.947 25 H 0.102 0.898 26 H 0.124 0.876 27 H 0.409 0.591 28 H 0.026 0.974 29 H 0.033 0.967 30 H 0.263 0.737 31 H 0.034 0.966 32 H 0.017 0.983 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.725 -3.740 17.183 18.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.179 4.179 3 C 0.294 3.706 4 O -0.469 6.469 5 N -0.356 5.356 6 C 0.046 3.954 7 H 0.120 0.880 8 C -0.005 4.005 9 N -0.346 5.346 10 C -0.365 4.365 11 H 0.069 0.931 12 C -0.228 4.228 13 N -0.600 5.600 14 Si 0.783 3.217 15 H -0.191 1.191 16 H -0.240 1.240 17 H -0.201 1.201 18 C -0.003 4.003 19 C -0.076 4.076 20 C -0.191 4.191 21 C -0.186 4.186 22 H 0.058 0.942 23 H 0.104 0.896 24 H 0.072 0.928 25 H 0.120 0.880 26 H 0.142 0.858 27 H 0.246 0.754 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.158 -3.159 17.001 18.356 hybrid contribution 1.139 0.283 -0.737 1.386 sum -5.019 -2.876 16.264 17.262 Atomic orbital electron populations 1.21509 0.93164 1.02590 1.01836 1.21693 0.98437 0.91505 1.06234 1.21493 0.81732 0.93073 0.74319 1.90653 1.56247 1.48200 1.51846 1.45940 1.07241 1.08412 1.74038 1.21936 0.94641 0.83903 0.94911 0.87956 1.22107 0.87832 0.96150 0.94392 1.44775 1.14109 1.74636 1.01044 1.18532 0.92142 1.42891 0.82913 0.93063 1.25567 0.99097 1.00234 0.97943 1.69985 1.19081 1.43972 1.26988 0.85840 0.78365 0.79911 0.77569 1.19149 1.23988 1.20097 1.21959 0.93321 0.97793 0.87265 1.21862 0.92587 0.98736 0.94422 1.21769 1.02642 0.93454 1.01205 1.21734 1.02891 0.97013 0.96943 0.94221 0.89550 0.92807 0.88013 0.85823 0.75363 0.95562 0.94906 0.92793 0.94752 0.96545 0.89643 0.91205 0.94022 0.91963 0.91213 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.20 71.98 0.66 -2.00 16 2 C -0.14 -2.76 6.42 29.84 0.19 -2.57 16 3 C 0.51 14.72 7.83 87.65 0.69 15.40 16 4 O -0.59 -21.81 15.73 -3.06 -0.05 -21.85 16 5 N -0.71 -20.06 4.69 -435.95 -2.05 -22.11 16 6 C 0.15 4.86 2.56 46.38 0.12 4.97 16 7 H 0.10 3.14 7.63 -2.38 -0.02 3.13 16 8 C 0.12 5.07 6.62 86.86 0.57 5.64 16 9 N -0.62 -29.89 3.21 -692.00 -2.22 -32.12 16 10 C -0.24 -13.89 10.56 84.03 0.89 -13.00 16 11 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 12 C -0.03 -2.00 5.43 84.86 0.46 -1.54 16 13 N -0.95 -60.57 13.97 21.65 0.30 -60.27 16 14 Si 0.95 47.28 24.39 68.60 1.67 48.95 16 15 H -0.27 -12.12 6.84 99.48 0.68 -11.44 16 16 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 17 H -0.27 -13.27 6.87 99.48 0.68 -12.59 16 18 C 0.12 4.88 4.32 86.73 0.37 5.26 16 19 C -0.07 -2.19 0.81 -50.99 -0.04 -2.23 16 20 C -0.13 -3.46 8.41 71.98 0.61 -2.85 16 21 C -0.13 -2.70 8.07 71.98 0.58 -2.12 16 22 H 0.04 0.95 8.10 -2.39 -0.02 0.94 16 23 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 24 H 0.05 1.13 8.10 -2.38 -0.02 1.11 16 25 H 0.10 1.90 8.14 -2.39 -0.02 1.89 16 26 H 0.12 1.63 8.14 -2.39 -0.02 1.62 16 27 H 0.41 10.23 6.88 -92.71 -0.64 9.60 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.03 1.37 7.80 -2.39 -0.02 1.35 16 30 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 31 H 0.03 1.42 7.76 -2.39 -0.02 1.40 16 32 H 0.02 0.74 3.23 -2.39 -0.01 0.73 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.04 1.26 7.58 -2.38 -0.02 1.24 16 36 H 0.06 1.24 6.35 -2.39 -0.02 1.22 16 37 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -73.48 297.98 3.11 -70.37 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.35 Total: 12.06 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 5.10 Total: 4.96 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -3.96 Total: -114.50 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.85 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.67 Total: 48.95 kcal Total: -73.48 3.11 -70.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972705074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.188 kcal (2) G-P(sol) polarization free energy of solvation -73.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds