Wall clock time and date at job start Sun Mar 29 2020 22:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47121 * 2 1 4 4 O 1.21281 * 119.99939 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00220 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00363 * 180.02562 * 5 3 2 7 7 H 1.09000 * 109.47157 * 34.99605 * 6 5 3 8 8 C 1.53002 * 109.47030 * 275.00406 * 6 5 3 9 9 C 1.52997 * 109.47092 * 299.99704 * 8 6 5 10 10 C 1.53006 * 109.47445 * 300.00075 * 9 8 6 11 11 C 1.53002 * 109.46711 * 59.99695 * 10 9 8 12 12 H 1.09002 * 109.47070 * 60.00376 * 11 10 9 13 13 N 1.46499 * 109.46799 * 180.02562 * 11 10 9 14 14 C 1.36943 * 119.99899 * 275.00081 * 13 11 10 15 15 H 1.07999 * 119.99910 * 359.97438 * 14 13 11 16 16 C 1.38807 * 119.99996 * 180.02562 * 14 13 11 17 17 N 1.31627 * 119.99922 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00040 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46991 * 90.00891 * 18 16 14 20 20 H 1.48506 * 109.47173 * 210.00494 * 18 16 14 21 21 H 1.48497 * 109.47415 * 330.00626 * 18 16 14 22 22 C 1.53000 * 109.47233 * 300.00001 * 11 10 9 23 23 H 1.09001 * 109.47093 * 59.99965 * 1 2 3 24 24 H 1.09002 * 109.47121 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47327 * 299.99785 * 1 2 3 26 26 H 1.08994 * 109.47090 * 240.00067 * 2 1 3 27 27 H 1.09001 * 109.47093 * 120.00035 * 2 1 3 28 28 H 0.96996 * 119.99931 * 0.02562 * 5 3 2 29 29 H 1.09002 * 109.47067 * 179.97438 * 8 6 5 30 30 H 1.09000 * 109.47312 * 59.99824 * 8 6 5 31 31 H 1.09001 * 109.47375 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.47497 * 59.99850 * 9 8 6 33 33 H 1.09002 * 109.46589 * 300.00331 * 10 9 8 34 34 H 1.08996 * 109.47165 * 179.97438 * 10 9 8 35 35 H 0.96998 * 120.00630 * 95.00428 * 13 11 10 36 36 H 0.97001 * 119.99255 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.47194 * 179.97438 * 22 11 10 38 38 H 1.08992 * 109.47399 * 300.00166 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3573 1.6671 0.0005 6 6 3.8457 3.0483 0.0011 7 1 3.1729 3.6713 0.5904 8 6 3.8975 3.5714 -1.4358 9 6 4.8418 2.6970 -2.2631 10 6 6.2443 2.7419 -1.6531 11 6 6.1923 2.2187 -0.2162 12 1 5.8290 1.1910 -0.2167 13 7 7.5351 2.2622 0.3681 14 6 8.4057 1.2255 0.1613 15 1 8.1022 0.3758 -0.4321 16 6 9.6777 1.2665 0.7154 17 7 10.5147 0.2703 0.5162 18 14 10.2023 2.7360 1.7424 19 1 9.8600 2.4919 3.1667 20 1 11.6685 2.9328 1.6124 21 1 9.4955 3.9515 1.2647 22 6 5.2481 3.0932 0.6111 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9877 0.9299 0.0005 29 1 4.2605 4.5993 -1.4353 30 1 2.8985 3.5395 -1.8704 31 1 4.8792 3.0700 -3.2867 32 1 4.4786 1.6693 -2.2635 33 1 6.6076 3.7696 -1.6527 34 1 6.9169 2.1185 -2.2423 35 1 7.8075 3.0252 0.9014 36 1 11.4037 0.2992 0.9031 37 1 5.2107 2.7203 1.6346 38 1 5.6114 4.1208 0.6115 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980828312.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:18 Heat of formation + Delta-G solvation = -48.567355 kcal Electronic energy + Delta-G solvation = -17801.447995 eV Core-core repulsion = 15064.120698 eV Total energy + Delta-G solvation = -2737.327297 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.11426 -38.08018 -34.62582 -33.16938 -32.64620 -31.37473 -29.67566 -28.34789 -24.62967 -23.45333 -22.13795 -20.98860 -20.56856 -18.96585 -17.62843 -17.18362 -15.73256 -15.51041 -15.19470 -14.60177 -14.14888 -13.91794 -13.70770 -13.23504 -12.84192 -12.65236 -12.55748 -12.24208 -11.87359 -11.82891 -11.78926 -11.28878 -11.25255 -10.99158 -10.94172 -10.45775 -10.27775 -10.10277 -9.74512 -9.72625 -9.60799 -8.97207 -8.87100 -7.31318 -5.81271 -3.17061 2.72037 3.30353 3.34691 3.37655 3.42907 4.55484 4.70614 4.88419 4.98266 5.02402 5.05736 5.08518 5.42536 5.43760 5.49650 5.59728 5.60645 5.68641 5.76330 5.82536 5.87167 5.95313 6.01549 6.09070 6.14041 6.22306 6.38359 6.40632 6.61540 6.64826 6.83092 6.97100 7.62247 7.94303 8.31960 8.37855 9.16211 9.88998 10.08535 11.36997 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032897 B = 0.005637 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.926252 B = 4965.599053 C = 5213.525040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.148 4.148 3 C 0.510 3.490 4 O -0.550 6.550 5 N -0.720 5.720 6 C 0.151 3.849 7 H 0.083 0.917 8 C -0.128 4.128 9 C -0.115 4.115 10 C -0.137 4.137 11 C 0.185 3.815 12 H 0.051 0.949 13 N -0.749 5.749 14 C -0.244 4.244 15 H 0.090 0.910 16 C 0.005 3.995 17 N -0.934 5.934 18 Si 0.884 3.116 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.137 4.137 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.404 0.596 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.361 0.639 36 H 0.259 0.741 37 H 0.070 0.930 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.050 2.430 -2.041 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.188 4.188 3 C 0.297 3.703 4 O -0.428 6.428 5 N -0.373 5.373 6 C 0.046 3.954 7 H 0.101 0.899 8 C -0.166 4.166 9 C -0.153 4.153 10 C -0.177 4.177 11 C 0.075 3.925 12 H 0.069 0.931 13 N -0.391 5.391 14 C -0.374 4.374 15 H 0.108 0.892 16 C -0.191 4.191 17 N -0.581 5.581 18 Si 0.714 3.286 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.203 1.203 22 C -0.176 4.176 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.240 0.760 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.472 2.866 -2.091 16.850 hybrid contribution 1.011 0.651 0.673 1.378 sum -15.461 3.516 -1.417 15.919 Atomic orbital electron populations 1.21506 0.93248 1.01335 1.03166 1.21650 0.98455 0.94178 1.04480 1.20758 0.82320 0.91700 0.75509 1.90667 1.55458 1.46615 1.50104 1.46261 1.06998 1.09319 1.74689 1.20899 0.95180 0.82715 0.96589 0.89891 1.21900 0.99734 0.99649 0.95339 1.21496 0.95891 0.99581 0.98342 1.22253 0.95105 1.01555 0.98834 1.20126 0.85212 0.96527 0.90593 0.93135 1.42796 1.11490 1.22683 1.62139 1.19057 0.93195 0.97651 1.27513 0.89231 1.24668 0.96412 0.97451 1.00520 1.69704 1.07376 1.31714 1.49345 0.86559 0.77814 0.83362 0.80822 1.21101 1.21768 1.20330 1.22165 0.93548 1.01827 1.00068 0.92135 0.92273 0.92125 0.88932 0.88905 0.76002 0.91299 0.92035 0.92728 0.92431 0.92685 0.91588 0.80639 0.93045 0.91174 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 9.20 37.16 0.34 -0.91 16 2 C -0.15 -1.38 6.42 -27.89 -0.18 -1.56 16 3 C 0.51 6.57 7.79 -10.99 -0.09 6.49 16 4 O -0.55 -8.97 15.64 5.56 0.09 -8.88 16 5 N -0.72 -8.95 4.23 -53.81 -0.23 -9.18 16 6 C 0.15 2.01 2.78 -67.93 -0.19 1.82 16 7 H 0.08 1.16 7.58 -51.93 -0.39 0.77 16 8 C -0.13 -1.66 5.60 -26.73 -0.15 -1.81 16 9 C -0.11 -1.55 5.77 -26.73 -0.15 -1.70 16 10 C -0.14 -2.26 5.50 -26.73 -0.15 -2.41 16 11 C 0.18 3.25 2.60 -67.93 -0.18 3.08 16 12 H 0.05 0.89 6.44 -51.93 -0.33 0.56 16 13 N -0.75 -16.84 4.92 -53.42 -0.26 -17.10 16 14 C -0.24 -6.62 10.41 -15.06 -0.16 -6.78 16 15 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 16 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 17 N -0.93 -28.77 13.97 55.49 0.78 -27.99 16 18 Si 0.88 21.70 27.73 -169.99 -4.71 16.98 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 22 C -0.14 -2.01 5.08 -26.73 -0.14 -2.15 16 23 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.62 8.10 -51.92 -0.42 0.19 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.40 4.70 6.87 -40.82 -0.28 4.42 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.76 7.60 -51.93 -0.39 0.37 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.36 8.07 5.66 -40.82 -0.23 7.83 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 302.03 15.07 4.55 4.55 Total: -1.00 -31.65 302.03 -7.21 -38.86 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.29 Total: 8.63 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.13 Total: -5.87 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.28 Total: -54.27 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.65 -7.21 -38.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980828312.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.706 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds