Wall clock time and date at job start Sun Mar 29 2020 22:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47121 * 2 1 4 4 O 1.21281 * 119.99939 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00220 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00363 * 180.02562 * 5 3 2 7 7 H 1.09000 * 109.47157 * 34.99605 * 6 5 3 8 8 C 1.53002 * 109.47030 * 275.00406 * 6 5 3 9 9 C 1.52997 * 109.47092 * 299.99704 * 8 6 5 10 10 C 1.53006 * 109.47445 * 300.00075 * 9 8 6 11 11 C 1.53002 * 109.46711 * 59.99695 * 10 9 8 12 12 H 1.09002 * 109.47070 * 60.00376 * 11 10 9 13 13 N 1.46499 * 109.46799 * 180.02562 * 11 10 9 14 14 C 1.36943 * 119.99899 * 275.00081 * 13 11 10 15 15 H 1.07999 * 119.99910 * 359.97438 * 14 13 11 16 16 C 1.38807 * 119.99996 * 180.02562 * 14 13 11 17 17 N 1.31627 * 119.99922 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00040 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46991 * 90.00891 * 18 16 14 20 20 H 1.48506 * 109.47173 * 210.00494 * 18 16 14 21 21 H 1.48497 * 109.47415 * 330.00626 * 18 16 14 22 22 C 1.53000 * 109.47233 * 300.00001 * 11 10 9 23 23 H 1.09001 * 109.47093 * 59.99965 * 1 2 3 24 24 H 1.09002 * 109.47121 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47327 * 299.99785 * 1 2 3 26 26 H 1.08994 * 109.47090 * 240.00067 * 2 1 3 27 27 H 1.09001 * 109.47093 * 120.00035 * 2 1 3 28 28 H 0.96996 * 119.99931 * 0.02562 * 5 3 2 29 29 H 1.09002 * 109.47067 * 179.97438 * 8 6 5 30 30 H 1.09000 * 109.47312 * 59.99824 * 8 6 5 31 31 H 1.09001 * 109.47375 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.47497 * 59.99850 * 9 8 6 33 33 H 1.09002 * 109.46589 * 300.00331 * 10 9 8 34 34 H 1.08996 * 109.47165 * 179.97438 * 10 9 8 35 35 H 0.96998 * 120.00630 * 95.00428 * 13 11 10 36 36 H 0.97001 * 119.99255 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.47194 * 179.97438 * 22 11 10 38 38 H 1.08992 * 109.47399 * 300.00166 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3573 1.6671 0.0005 6 6 3.8457 3.0483 0.0011 7 1 3.1729 3.6713 0.5904 8 6 3.8975 3.5714 -1.4358 9 6 4.8418 2.6970 -2.2631 10 6 6.2443 2.7419 -1.6531 11 6 6.1923 2.2187 -0.2162 12 1 5.8290 1.1910 -0.2167 13 7 7.5351 2.2622 0.3681 14 6 8.4057 1.2255 0.1613 15 1 8.1022 0.3758 -0.4321 16 6 9.6777 1.2665 0.7154 17 7 10.5147 0.2703 0.5162 18 14 10.2023 2.7360 1.7424 19 1 9.8600 2.4919 3.1667 20 1 11.6685 2.9328 1.6124 21 1 9.4955 3.9515 1.2647 22 6 5.2481 3.0932 0.6111 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9877 0.9299 0.0005 29 1 4.2605 4.5993 -1.4353 30 1 2.8985 3.5395 -1.8704 31 1 4.8792 3.0700 -3.2867 32 1 4.4786 1.6693 -2.2635 33 1 6.6076 3.7696 -1.6527 34 1 6.9169 2.1185 -2.2423 35 1 7.8075 3.0252 0.9014 36 1 11.4037 0.2992 0.9031 37 1 5.2107 2.7203 1.6346 38 1 5.6114 4.1208 0.6115 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980828312.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:18 Heat of formation + Delta-G solvation = -69.789887 kcal Electronic energy + Delta-G solvation = -17802.368273 eV Core-core repulsion = 15064.120698 eV Total energy + Delta-G solvation = -2738.247575 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.21048 -39.30698 -36.25576 -34.42560 -33.63465 -33.13986 -30.89488 -29.85784 -25.61291 -25.20384 -23.31966 -22.45189 -21.59028 -20.30317 -19.46200 -18.19729 -16.85400 -16.74574 -16.44823 -16.26605 -15.38307 -15.23323 -14.97736 -14.67301 -14.36875 -14.08855 -13.62765 -13.44255 -13.05710 -13.01172 -12.86867 -12.80153 -12.59056 -12.36893 -12.01232 -11.99466 -11.80422 -11.61235 -11.51964 -11.03485 -10.88003 -10.78765 -9.97291 -9.28047 -7.99872 -5.32595 1.39938 1.42285 1.49605 1.72842 2.33383 2.50635 3.31745 3.46640 3.82368 3.90364 3.92356 4.17492 4.27034 4.29582 4.30548 4.34112 4.52939 4.65299 4.70002 4.74104 4.81936 4.96187 5.02626 5.09141 5.10654 5.16401 5.20692 5.35207 5.37465 5.49618 5.53894 5.66833 5.81134 6.24517 6.62537 7.11078 7.32491 7.87857 8.05781 9.21633 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032897 B = 0.005637 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.926252 B = 4965.599053 C = 5213.525040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.144 4.144 3 C 0.507 3.493 4 O -0.587 6.587 5 N -0.717 5.717 6 C 0.156 3.844 7 H 0.081 0.919 8 C -0.121 4.121 9 C -0.105 4.105 10 C -0.130 4.130 11 C 0.179 3.821 12 H 0.049 0.951 13 N -0.752 5.752 14 C -0.224 4.224 15 H 0.060 0.940 16 C -0.064 4.064 17 N -0.985 5.985 18 Si 0.951 3.049 19 H -0.279 1.279 20 H -0.300 1.300 21 H -0.252 1.252 22 C -0.125 4.125 23 H 0.047 0.953 24 H 0.082 0.918 25 H 0.046 0.954 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.408 0.592 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.364 0.636 36 H 0.256 0.744 37 H 0.069 0.931 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.385 3.447 -1.780 17.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.183 4.183 3 C 0.296 3.704 4 O -0.468 6.468 5 N -0.370 5.370 6 C 0.050 3.950 7 H 0.099 0.901 8 C -0.160 4.160 9 C -0.143 4.143 10 C -0.170 4.170 11 C 0.071 3.929 12 H 0.067 0.933 13 N -0.395 5.395 14 C -0.355 4.355 15 H 0.078 0.922 16 C -0.255 4.255 17 N -0.636 5.636 18 Si 0.779 3.221 19 H -0.206 1.206 20 H -0.227 1.227 21 H -0.177 1.177 22 C -0.163 4.163 23 H 0.067 0.933 24 H 0.101 0.899 25 H 0.066 0.934 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.245 0.755 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.197 0.803 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.859 3.900 -1.843 18.372 hybrid contribution 1.348 0.275 0.528 1.474 sum -16.511 4.174 -1.315 17.081 Atomic orbital electron populations 1.21507 0.93227 1.02480 1.01921 1.21720 0.98401 0.91980 1.06247 1.21377 0.81907 0.92792 0.74366 1.90652 1.56243 1.48054 1.51842 1.46265 1.07199 1.09137 1.74358 1.20805 0.94100 0.83320 0.96749 0.90122 1.21846 0.99354 1.00061 0.94696 1.21402 0.93881 1.00140 0.98886 1.22100 0.96527 1.00759 0.97588 1.20367 0.83520 0.97449 0.91560 0.93306 1.42831 1.12634 1.21526 1.62523 1.19029 0.93646 0.97585 1.25249 0.92231 1.25450 0.96746 1.00568 1.02782 1.69883 1.07804 1.34344 1.51584 0.85461 0.76823 0.80665 0.79112 1.20577 1.22749 1.17669 1.22023 0.93379 1.01545 0.99396 0.93350 0.89897 0.93432 0.86986 0.87106 0.75465 0.90218 0.92219 0.91470 0.92124 0.92612 0.94310 0.80269 0.93518 0.91232 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.20 71.98 0.66 -1.58 16 2 C -0.14 -2.36 6.42 29.85 0.19 -2.16 16 3 C 0.51 12.17 7.79 87.66 0.68 12.85 16 4 O -0.59 -18.46 15.64 -3.03 -0.05 -18.51 16 5 N -0.72 -16.41 4.23 -442.55 -1.87 -18.29 16 6 C 0.16 3.80 2.78 44.99 0.13 3.92 16 7 H 0.08 2.09 7.58 -2.39 -0.02 2.07 16 8 C -0.12 -2.83 5.60 30.59 0.17 -2.66 16 9 C -0.10 -2.60 5.77 30.60 0.18 -2.42 16 10 C -0.13 -4.09 5.50 30.60 0.17 -3.92 16 11 C 0.18 6.02 2.60 44.99 0.12 6.14 16 12 H 0.05 1.67 6.44 -2.39 -0.02 1.66 16 13 N -0.75 -32.87 4.92 -322.94 -1.59 -34.46 16 14 C -0.22 -12.20 10.41 84.03 0.87 -11.33 16 15 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 16 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 17 N -0.99 -62.09 13.97 21.65 0.30 -61.79 16 18 Si 0.95 44.53 27.73 68.60 1.90 46.43 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 21 H -0.25 -10.60 6.52 99.48 0.65 -9.96 16 22 C -0.12 -3.36 5.08 30.59 0.16 -3.20 16 23 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 24 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.05 0.91 8.10 -2.38 -0.02 0.89 16 26 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.41 8.69 6.87 -92.71 -0.64 8.05 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.47 7.60 -2.39 -0.02 1.46 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.36 15.41 5.66 -92.71 -0.52 14.89 16 36 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -68.54 302.03 2.31 -66.23 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: -0.18 Total: 27.98 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 3.79 Total: -7.58 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -3.16 Total: -114.54 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.05 Total: -18.51 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.90 Total: 46.43 kcal Total: -68.54 2.31 -66.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980828312.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.559 kcal (2) G-P(sol) polarization free energy of solvation -68.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds