Wall clock time and date at job start Sun Mar 29 2020 22:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47365 * 2 1 4 4 O 1.21281 * 120.00095 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00182 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99910 * 180.02562 * 5 3 2 7 7 H 1.09002 * 109.47129 * 324.99754 * 6 5 3 8 8 C 1.52997 * 109.47473 * 85.00011 * 6 5 3 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47233 * 299.99657 * 9 8 6 11 11 C 1.52997 * 109.46817 * 60.00194 * 10 9 8 12 12 H 1.09001 * 109.47289 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47294 * 60.00190 * 11 10 9 14 14 C 1.36941 * 120.00205 * 84.99773 * 13 11 10 15 15 H 1.07994 * 119.99574 * 0.02562 * 14 13 11 16 16 C 1.38805 * 120.00191 * 180.02562 * 14 13 11 17 17 N 1.31626 * 120.00205 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00209 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47264 * 89.99556 * 18 16 14 20 20 H 1.48500 * 109.47266 * 209.99780 * 18 16 14 21 21 H 1.48503 * 109.46755 * 329.99607 * 18 16 14 22 22 C 1.52999 * 109.46944 * 205.00356 * 6 5 3 23 23 H 1.09006 * 109.47048 * 59.99857 * 1 2 3 24 24 H 1.09004 * 109.47178 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46920 * 299.99959 * 1 2 3 26 26 H 1.09007 * 109.47219 * 240.00332 * 2 1 3 27 27 H 1.09000 * 109.47444 * 120.00734 * 2 1 3 28 28 H 0.96994 * 120.00115 * 0.02562 * 5 3 2 29 29 H 1.09002 * 109.47153 * 59.99757 * 8 6 5 30 30 H 1.09001 * 109.46832 * 299.99948 * 8 6 5 31 31 H 1.08992 * 109.47399 * 59.99823 * 9 8 6 32 32 H 1.09004 * 109.46724 * 180.02562 * 9 8 6 33 33 H 1.08993 * 109.47662 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.47075 * 300.00932 * 10 9 8 35 35 H 0.97010 * 120.00154 * 264.99886 * 13 11 10 36 36 H 0.97000 * 120.00352 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.47486 * 59.99569 * 22 6 5 38 38 H 1.09002 * 109.46716 * 299.99651 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8458 3.0482 0.0011 7 1 3.1735 3.6715 -0.5884 8 6 3.8968 3.5706 1.4382 9 6 4.4062 5.0133 1.4386 10 6 5.8089 5.0591 0.8293 11 6 5.7579 4.5367 -0.6078 12 1 6.7573 4.5689 -1.0418 13 7 4.8538 5.3741 -1.4000 14 6 5.3165 6.5276 -1.9750 15 1 6.3480 6.8198 -1.8447 16 6 4.4598 7.3213 -2.7251 17 7 3.2027 6.9649 -2.8843 18 14 5.0910 8.8944 -3.5100 19 1 5.6058 8.5968 -4.8707 20 1 3.9838 9.8796 -3.6042 21 1 6.1853 9.4576 -2.6790 22 6 5.2485 3.0934 -0.6081 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.9878 0.9298 0.0005 29 1 4.5692 2.9473 2.0277 30 1 2.8974 3.5384 1.8722 31 1 3.7336 5.6363 0.8493 32 1 4.4430 5.3853 2.4626 33 1 6.1721 6.0868 0.8300 34 1 6.4816 4.4360 1.4187 35 1 3.9274 5.1114 -1.5173 36 1 2.6039 7.5197 -3.4082 37 1 5.2122 2.7212 -1.6320 38 1 5.9209 2.4701 -0.0186 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980828313.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:20 Heat of formation + Delta-G solvation = -50.226078 kcal Electronic energy + Delta-G solvation = -17900.271563 eV Core-core repulsion = 15162.872339 eV Total energy + Delta-G solvation = -2737.399224 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.79354 -37.97536 -34.40105 -33.05818 -32.60951 -30.89269 -29.17406 -27.97387 -24.49293 -23.57685 -21.85243 -21.46035 -20.09947 -18.51033 -17.22635 -16.88574 -15.80165 -15.48109 -14.60692 -14.50336 -13.82489 -13.74154 -13.55927 -13.23994 -13.04491 -12.44696 -12.17457 -11.91482 -11.75674 -11.72334 -11.35279 -11.17545 -10.86176 -10.77471 -10.68923 -10.18125 -10.14306 -10.02665 -9.83893 -9.49268 -9.35794 -8.86105 -8.66541 -6.89768 -5.69956 -2.99267 2.88836 3.41354 3.47086 3.51843 3.53978 4.63845 4.81255 5.04517 5.06088 5.18725 5.28351 5.48828 5.57528 5.64679 5.72840 5.74420 5.79278 5.90022 5.90956 5.95211 6.12898 6.16253 6.21038 6.23991 6.44202 6.48289 6.67784 6.76854 6.86302 6.89659 7.06775 7.15274 7.74903 7.75783 8.47877 8.50178 9.58875 10.16956 10.51117 11.52274 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027566 B = 0.006231 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.494602 B = 4492.577127 C = 5070.925768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.504 3.496 4 O -0.534 6.534 5 N -0.728 5.728 6 C 0.144 3.856 7 H 0.098 0.902 8 C -0.119 4.119 9 C -0.110 4.110 10 C -0.135 4.135 11 C 0.179 3.821 12 H 0.050 0.950 13 N -0.721 5.721 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.931 5.931 18 Si 0.904 3.096 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.283 1.283 22 C -0.127 4.127 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.394 0.606 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.042 0.958 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.066 0.934 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.460 -14.685 8.001 16.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 C 0.290 3.710 4 O -0.410 6.410 5 N -0.379 5.379 6 C 0.040 3.960 7 H 0.116 0.884 8 C -0.158 4.158 9 C -0.148 4.148 10 C -0.175 4.175 11 C 0.068 3.932 12 H 0.068 0.932 13 N -0.364 5.364 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.736 3.264 19 H -0.218 1.218 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.166 4.166 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.227 0.773 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.220 0.780 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.963 -13.858 7.917 15.989 hybrid contribution 0.378 0.455 -0.458 0.748 sum 1.341 -13.403 7.458 15.397 Atomic orbital electron populations 1.21521 0.93230 1.01181 1.03530 1.21630 0.98600 0.94305 1.03888 1.20751 0.82491 0.91631 0.76099 1.90747 1.55189 1.46424 1.48645 1.46220 1.06861 1.09209 1.75593 1.21047 0.96330 0.81709 0.96921 0.88419 1.21833 1.00606 0.97262 0.96094 1.21360 0.98173 0.95510 0.99756 1.22173 0.95803 1.01187 0.98359 1.20168 0.94355 0.87958 0.90718 0.93169 1.42515 1.10051 1.24561 1.59288 1.19227 0.95062 0.98441 1.24320 0.91236 1.24735 0.95751 0.99194 1.01208 1.69673 1.03975 1.39390 1.44838 0.86231 0.77434 0.83450 0.79307 1.21844 1.21865 1.20832 1.22078 0.94813 0.99136 1.00580 0.91851 0.92415 0.92046 0.89198 0.89343 0.77287 0.92904 0.92418 0.90350 0.93353 0.92035 0.93932 0.78023 0.93518 0.91492 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.20 37.16 0.34 -1.10 16 2 C -0.14 -1.44 6.42 -27.89 -0.18 -1.62 16 3 C 0.50 7.49 7.79 -10.99 -0.09 7.41 16 4 O -0.53 -10.66 15.64 5.56 0.09 -10.57 16 5 N -0.73 -9.82 5.08 -53.81 -0.27 -10.10 16 6 C 0.14 2.41 2.28 -67.93 -0.15 2.25 16 7 H 0.10 2.11 5.94 -51.93 -0.31 1.80 16 8 C -0.12 -1.92 5.49 -26.73 -0.15 -2.07 16 9 C -0.11 -1.96 5.77 -26.73 -0.15 -2.11 16 10 C -0.13 -2.40 5.61 -26.73 -0.15 -2.55 16 11 C 0.18 3.48 3.10 -67.90 -0.21 3.27 16 12 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 13 N -0.72 -17.93 4.28 -53.40 -0.23 -18.16 16 14 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 18 Si 0.90 22.66 29.55 -169.99 -5.02 17.64 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C -0.13 -2.03 5.08 -26.70 -0.14 -2.17 16 23 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.39 3.88 8.60 -40.82 -0.35 3.53 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.70 7.60 -51.93 -0.39 1.30 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.38 10.38 6.06 -40.82 -0.25 10.13 16 36 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 305.15 15.07 4.60 4.60 Total: -1.00 -32.71 305.15 -7.57 -40.28 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -6.34 Total: 10.26 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -1.12 Total: -5.94 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.22 Total: -56.27 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.71 -7.57 -40.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980828313.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.942 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds