Wall clock time and date at job start Sun Mar 29 2020 22:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47365 * 2 1 4 4 O 1.21281 * 120.00095 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00182 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99910 * 180.02562 * 5 3 2 7 7 H 1.09002 * 109.47129 * 324.99754 * 6 5 3 8 8 C 1.52997 * 109.47473 * 85.00011 * 6 5 3 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47233 * 299.99657 * 9 8 6 11 11 C 1.52997 * 109.46817 * 60.00194 * 10 9 8 12 12 H 1.09001 * 109.47289 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47294 * 60.00190 * 11 10 9 14 14 C 1.36941 * 120.00205 * 84.99773 * 13 11 10 15 15 H 1.07994 * 119.99574 * 0.02562 * 14 13 11 16 16 C 1.38805 * 120.00191 * 180.02562 * 14 13 11 17 17 N 1.31626 * 120.00205 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00209 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47264 * 89.99556 * 18 16 14 20 20 H 1.48500 * 109.47266 * 209.99780 * 18 16 14 21 21 H 1.48503 * 109.46755 * 329.99607 * 18 16 14 22 22 C 1.52999 * 109.46944 * 205.00356 * 6 5 3 23 23 H 1.09006 * 109.47048 * 59.99857 * 1 2 3 24 24 H 1.09004 * 109.47178 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46920 * 299.99959 * 1 2 3 26 26 H 1.09007 * 109.47219 * 240.00332 * 2 1 3 27 27 H 1.09000 * 109.47444 * 120.00734 * 2 1 3 28 28 H 0.96994 * 120.00115 * 0.02562 * 5 3 2 29 29 H 1.09002 * 109.47153 * 59.99757 * 8 6 5 30 30 H 1.09001 * 109.46832 * 299.99948 * 8 6 5 31 31 H 1.08992 * 109.47399 * 59.99823 * 9 8 6 32 32 H 1.09004 * 109.46724 * 180.02562 * 9 8 6 33 33 H 1.08993 * 109.47662 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.47075 * 300.00932 * 10 9 8 35 35 H 0.97010 * 120.00154 * 264.99886 * 13 11 10 36 36 H 0.97000 * 120.00352 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.47486 * 59.99569 * 22 6 5 38 38 H 1.09002 * 109.46716 * 299.99651 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8458 3.0482 0.0011 7 1 3.1735 3.6715 -0.5884 8 6 3.8968 3.5706 1.4382 9 6 4.4062 5.0133 1.4386 10 6 5.8089 5.0591 0.8293 11 6 5.7579 4.5367 -0.6078 12 1 6.7573 4.5689 -1.0418 13 7 4.8538 5.3741 -1.4000 14 6 5.3165 6.5276 -1.9750 15 1 6.3480 6.8198 -1.8447 16 6 4.4598 7.3213 -2.7251 17 7 3.2027 6.9649 -2.8843 18 14 5.0910 8.8944 -3.5100 19 1 5.6058 8.5968 -4.8707 20 1 3.9838 9.8796 -3.6042 21 1 6.1853 9.4576 -2.6790 22 6 5.2485 3.0934 -0.6081 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.9878 0.9298 0.0005 29 1 4.5692 2.9473 2.0277 30 1 2.8974 3.5384 1.8722 31 1 3.7336 5.6363 0.8493 32 1 4.4430 5.3853 2.4626 33 1 6.1721 6.0868 0.8300 34 1 6.4816 4.4360 1.4187 35 1 3.9274 5.1114 -1.5173 36 1 2.6039 7.5197 -3.4082 37 1 5.2122 2.7212 -1.6320 38 1 5.9209 2.4701 -0.0186 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980828313.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:19 Heat of formation + Delta-G solvation = -73.589845 kcal Electronic energy + Delta-G solvation = -17901.284692 eV Core-core repulsion = 15162.872339 eV Total energy + Delta-G solvation = -2738.412353 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.06191 -39.39986 -35.99679 -34.69423 -33.62559 -32.67510 -30.59422 -29.62903 -25.77122 -25.37091 -23.30361 -22.77161 -21.30993 -19.99139 -19.22126 -18.04164 -17.20591 -16.55381 -16.51583 -15.84411 -15.36819 -15.30444 -15.14117 -14.77589 -14.27601 -13.72696 -13.47129 -13.43066 -13.03641 -12.85128 -12.83012 -12.62264 -12.58984 -12.16057 -12.15612 -11.99418 -11.80812 -11.56333 -11.44000 -11.18141 -10.82627 -10.66967 -9.95701 -8.95966 -7.90885 -5.18901 1.45706 1.47842 1.56098 1.74601 2.30307 2.57730 3.42464 3.75391 3.85428 3.95221 4.07983 4.18980 4.28026 4.30880 4.37542 4.46292 4.58403 4.70461 4.74610 4.80053 4.82780 4.99271 5.02975 5.08674 5.10128 5.24080 5.31218 5.36568 5.44096 5.49716 5.55223 5.67191 5.67937 6.30943 6.69379 7.36157 7.42178 8.16100 8.36408 9.32884 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027566 B = 0.006231 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.494602 B = 4492.577127 C = 5070.925768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.132 4.132 3 C 0.494 3.506 4 O -0.597 6.597 5 N -0.712 5.712 6 C 0.149 3.851 7 H 0.038 0.962 8 C -0.108 4.108 9 C -0.107 4.107 10 C -0.125 4.125 11 C 0.165 3.835 12 H 0.054 0.946 13 N -0.735 5.735 14 C -0.232 4.232 15 H 0.079 0.921 16 C -0.082 4.082 17 N -0.975 5.975 18 Si 0.971 3.029 19 H -0.287 1.287 20 H -0.301 1.301 21 H -0.267 1.267 22 C -0.114 4.114 23 H 0.036 0.964 24 H 0.090 0.910 25 H 0.043 0.957 26 H 0.117 0.883 27 H 0.125 0.875 28 H 0.417 0.583 29 H 0.092 0.908 30 H 0.039 0.961 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.039 0.961 34 H 0.087 0.913 35 H 0.369 0.631 36 H 0.247 0.753 37 H 0.058 0.942 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 -17.173 9.337 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.172 4.172 3 C 0.282 3.718 4 O -0.477 6.477 5 N -0.364 5.364 6 C 0.044 3.956 7 H 0.056 0.944 8 C -0.147 4.147 9 C -0.146 4.146 10 C -0.165 4.165 11 C 0.057 3.943 12 H 0.072 0.928 13 N -0.376 5.376 14 C -0.364 4.364 15 H 0.097 0.903 16 C -0.274 4.274 17 N -0.627 5.627 18 Si 0.800 3.200 19 H -0.214 1.214 20 H -0.229 1.229 21 H -0.192 1.192 22 C -0.152 4.152 23 H 0.056 0.944 24 H 0.109 0.891 25 H 0.062 0.938 26 H 0.135 0.865 27 H 0.143 0.857 28 H 0.255 0.745 29 H 0.111 0.889 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.202 0.798 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.461 -16.407 9.284 19.167 hybrid contribution -0.333 1.166 -0.815 1.461 sum 3.128 -15.241 8.469 17.714 Atomic orbital electron populations 1.21548 0.94045 1.02602 1.01464 1.21688 0.97778 0.90839 1.06865 1.21783 0.82245 0.93233 0.74501 1.90733 1.56753 1.48808 1.51453 1.46004 1.07168 1.08534 1.74707 1.20712 0.95621 0.82759 0.96533 0.94386 1.21730 1.00458 0.96543 0.95930 1.21298 0.97341 0.96075 0.99849 1.22049 0.96218 1.00724 0.97538 1.20529 0.93484 0.89381 0.90916 0.92766 1.42761 1.10195 1.24662 1.59961 1.19678 0.95197 0.98886 1.22618 0.90320 1.25556 0.96013 1.02793 1.02993 1.69868 1.05427 1.40773 1.46607 0.85169 0.76790 0.79500 0.78515 1.21447 1.22851 1.19193 1.21953 0.94865 0.97311 1.01089 0.94439 0.89077 0.93764 0.86459 0.85657 0.74502 0.88910 0.94212 0.95602 0.91433 0.94196 0.89481 0.79789 0.94420 0.92274 0.87205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.20 71.98 0.66 -2.10 16 2 C -0.13 -2.26 6.42 29.85 0.19 -2.07 16 3 C 0.49 14.33 7.79 87.65 0.68 15.01 16 4 O -0.60 -25.01 15.64 -3.03 -0.05 -25.06 16 5 N -0.71 -17.78 5.08 -442.54 -2.25 -20.03 16 6 C 0.15 4.91 2.28 44.99 0.10 5.01 16 7 H 0.04 1.75 5.94 -2.39 -0.01 1.73 16 8 C -0.11 -3.33 5.49 30.59 0.17 -3.16 16 9 C -0.11 -3.79 5.77 30.60 0.18 -3.61 16 10 C -0.13 -4.20 5.61 30.59 0.17 -4.03 16 11 C 0.17 6.24 3.10 45.01 0.14 6.38 16 12 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 13 N -0.73 -37.53 4.28 -322.87 -1.38 -38.91 16 14 C -0.23 -13.06 9.93 84.03 0.83 -12.22 16 15 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 16 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 17 N -0.98 -63.14 13.06 21.65 0.28 -62.86 16 18 Si 0.97 47.71 29.55 68.60 2.03 49.74 16 19 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 20 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 C -0.11 -3.36 5.08 30.61 0.16 -3.20 16 23 H 0.04 0.92 8.10 -2.38 -0.02 0.90 16 24 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.04 1.01 8.10 -2.39 -0.02 1.00 16 26 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.42 6.48 8.60 -92.71 -0.80 5.68 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.03 1.16 7.60 -2.39 -0.02 1.15 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.37 21.12 6.06 -92.70 -0.56 20.55 16 36 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 37 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -77.57 305.15 2.07 -75.50 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -0.32 Total: 30.03 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 3.75 Total: -8.41 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -3.35 Total: -121.80 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.05 Total: -25.06 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -77.57 2.07 -75.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980828313.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.913 kcal (2) G-P(sol) polarization free energy of solvation -77.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds