Wall clock time and date at job start Sun Mar 29 2020 23:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47259 * 2 1 4 4 C 1.50700 * 109.46758 * 119.99746 * 2 1 3 5 5 O 1.21283 * 120.00154 * 255.87500 * 4 2 1 6 6 N 1.34780 * 120.00293 * 75.87204 * 4 2 1 7 7 C 1.47426 * 125.64504 * 354.58184 * 6 4 2 8 8 C 1.54907 * 104.83100 * 204.17736 * 7 6 4 9 9 C 1.55157 * 101.57869 * 322.98627 * 8 7 6 10 10 H 1.08995 * 110.72343 * 277.14153 * 9 8 7 11 11 N 1.46509 * 110.71991 * 153.86807 * 9 8 7 12 12 C 1.36939 * 119.99761 * 91.47914 * 11 9 8 13 13 H 1.08001 * 119.99939 * 359.97438 * 12 11 9 14 14 C 1.38815 * 119.99584 * 180.02562 * 12 11 9 15 15 N 1.31612 * 120.00284 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99539 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47500 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46669 * 120.00353 * 16 14 12 19 19 H 1.48506 * 109.46938 * 240.00033 * 16 14 12 20 20 C 1.47018 * 125.64968 * 174.63346 * 6 4 2 21 21 H 1.09001 * 109.88279 * 59.47995 * 20 6 4 22 22 C 1.52994 * 110.00992 * 298.38249 * 20 6 4 23 23 H 1.09002 * 109.46429 * 66.36703 * 1 2 3 24 24 H 1.09000 * 109.47210 * 186.36399 * 1 2 3 25 25 H 1.08998 * 109.47270 * 306.36537 * 1 2 3 26 26 H 1.08996 * 109.47138 * 239.99499 * 2 1 3 27 27 H 1.08995 * 109.47161 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46854 * 300.00046 * 3 2 1 29 29 H 1.09007 * 109.47445 * 59.99181 * 3 2 1 30 30 H 1.08997 * 110.36934 * 85.33596 * 7 6 4 31 31 H 1.09008 * 110.46074 * 323.05572 * 7 6 4 32 32 H 1.09005 * 110.99991 * 204.91736 * 8 7 6 33 33 H 1.08997 * 111.04387 * 81.07652 * 8 7 6 34 34 H 0.96991 * 119.99907 * 271.47795 * 11 9 8 35 35 H 0.97001 * 120.00396 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.47861 * 301.80013 * 22 20 6 37 37 H 1.08999 * 109.47016 * 61.80688 * 22 20 6 38 38 H 1.09004 * 109.46654 * 181.79880 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.4761 -0.0714 2.1610 6 7 1.9883 -2.0558 1.2972 7 6 1.3753 -2.9461 0.2946 8 6 1.0280 -4.2398 1.0726 9 6 2.2329 -4.3520 2.0438 10 1 3.0838 -4.8214 1.5501 11 7 1.8585 -5.0934 3.2507 12 6 2.0378 -6.4499 3.3042 13 1 2.4548 -6.9733 2.4565 14 6 1.6825 -7.1523 4.4476 15 7 1.1730 -6.5147 5.4800 16 14 1.9264 -9.0029 4.5203 17 1 2.5108 -9.4759 3.2397 18 1 2.8462 -9.3374 5.6371 19 1 0.6165 -9.6665 4.7422 20 6 2.5426 -2.8786 2.3821 21 1 2.0736 -2.6090 3.3285 22 6 4.0559 -2.6729 2.4744 23 1 -0.3632 0.4120 -0.9415 24 1 -0.3633 -1.0213 0.1139 25 1 -0.3634 0.6093 0.8275 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 2.0843 -3.1627 -0.5044 31 1 0.4710 -2.4947 -0.1137 32 1 0.9847 -5.0987 0.4029 33 1 0.0931 -4.1274 1.6214 34 1 1.4837 -4.6233 4.0118 35 1 0.9244 -7.0055 6.2789 36 1 4.5167 -2.9323 1.5213 37 1 4.2671 -1.6294 2.7080 38 1 4.4620 -3.3104 3.2597 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985992848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:12 Heat of formation + Delta-G solvation = -33.947005 kcal Electronic energy + Delta-G solvation = -17912.047574 eV Core-core repulsion = 15175.354263 eV Total energy + Delta-G solvation = -2736.693311 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.09846 -37.56826 -34.54343 -34.02467 -31.48360 -30.85627 -29.07672 -27.24761 -25.19778 -24.03266 -22.98651 -21.52097 -19.94333 -18.55464 -17.26629 -16.92819 -16.03783 -14.98219 -14.77655 -14.54049 -13.85444 -13.67169 -13.27339 -13.13259 -12.84287 -12.66948 -12.33544 -12.13056 -11.90798 -11.83077 -11.64240 -11.22010 -11.11885 -11.05467 -11.01258 -10.84402 -10.57792 -10.21948 -10.00751 -9.77216 -9.41330 -8.95777 -8.34193 -7.04246 -5.82741 -3.13189 2.85053 3.21360 3.40016 3.45781 3.48043 4.53255 4.54021 4.78829 4.91734 5.04458 5.15178 5.34139 5.37965 5.47707 5.49237 5.54483 5.65211 5.70292 5.74425 5.78315 5.84482 5.96617 6.07849 6.10777 6.15620 6.17955 6.30476 6.46637 6.58723 6.61571 6.77517 6.91950 7.64952 7.83477 8.34305 8.42209 9.46138 10.00860 10.35629 11.39540 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.046671 B = 0.005318 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.803433 B = 5263.406117 C = 5451.909647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.132 4.132 4 C 0.529 3.471 5 O -0.545 6.545 6 N -0.609 5.609 7 C 0.095 3.905 8 C -0.157 4.157 9 C 0.177 3.823 10 H 0.067 0.933 11 N -0.714 5.714 12 C -0.244 4.244 13 H 0.073 0.927 14 C -0.010 4.010 15 N -0.930 5.930 16 Si 0.908 3.092 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C 0.124 3.876 21 H 0.076 0.924 22 C -0.152 4.152 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 10.659 -13.467 17.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.189 4.189 4 C 0.317 3.683 5 O -0.422 6.422 6 N -0.343 5.343 7 C -0.029 4.029 8 C -0.198 4.198 9 C 0.065 3.935 10 H 0.085 0.915 11 N -0.354 5.354 12 C -0.375 4.375 13 H 0.091 0.909 14 C -0.206 4.206 15 N -0.577 5.577 16 Si 0.739 3.261 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C 0.020 3.980 21 H 0.094 0.906 22 C -0.211 4.211 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.225 10.879 -12.961 16.923 hybrid contribution -0.099 -0.989 0.279 1.032 sum 0.126 9.890 -12.682 16.083 Atomic orbital electron populations 1.21841 0.92966 1.02892 1.02652 1.21256 0.97665 0.97684 0.96659 1.21614 1.01376 0.93843 1.02089 1.20300 0.78499 0.80660 0.88843 1.90668 1.47207 1.65214 1.39126 1.48600 1.57049 1.04829 1.23842 1.22478 0.97227 0.91503 0.91649 1.23572 1.01948 0.94898 0.99363 1.21236 0.94614 0.88534 0.89135 0.91520 1.42362 1.74925 1.04999 1.13149 1.19268 1.35505 0.83342 0.99385 0.90928 1.24764 1.01486 0.98105 0.96267 1.69673 1.48298 1.34711 1.05052 0.86116 0.77308 0.85340 0.77379 1.20485 1.21805 1.21820 1.21941 0.94035 0.91574 0.90457 0.90601 1.22018 0.95072 1.02193 1.01784 0.91595 0.91673 0.91961 0.89190 0.92381 0.92247 0.91651 0.91865 0.90969 0.90593 0.90704 0.77985 0.93406 0.93164 0.92309 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.02 37.16 0.34 -1.09 16 2 C -0.11 -1.26 2.61 -91.77 -0.24 -1.50 16 3 C -0.13 -1.39 8.61 37.16 0.32 -1.07 16 4 C 0.53 8.31 6.80 -10.98 -0.07 8.23 16 5 O -0.54 -10.52 15.26 5.56 0.08 -10.44 16 6 N -0.61 -9.54 3.07 -163.02 -0.50 -10.04 16 7 C 0.09 1.24 6.43 -2.53 -0.02 1.22 16 8 C -0.16 -2.54 6.77 -24.58 -0.17 -2.71 16 9 C 0.18 3.39 3.14 -66.09 -0.21 3.19 16 10 H 0.07 1.28 7.80 -51.93 -0.41 0.88 16 11 N -0.71 -17.39 5.22 -51.65 -0.27 -17.66 16 12 C -0.24 -6.54 9.96 -15.06 -0.15 -6.69 16 13 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 14 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 15 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 16 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 20 C 0.12 2.25 3.18 -66.96 -0.21 2.03 16 21 H 0.08 1.57 7.72 -51.93 -0.40 1.17 16 22 C -0.15 -2.62 9.11 37.15 0.34 -2.28 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.65 5.72 -51.93 -0.30 0.36 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.86 7.92 -51.93 -0.41 0.45 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.77 7.93 -51.93 -0.41 0.36 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.79 5.43 -51.92 -0.28 0.51 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.39 10.19 7.56 -40.82 -0.31 9.88 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.04 7.09 -51.93 -0.37 0.68 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 305.20 15.07 4.60 4.60 Total: -1.00 -30.85 305.20 -6.79 -37.64 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.23 Total: 7.04 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -0.17 Total: -1.03 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -0.05 Total: -54.67 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.85 -6.79 -37.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985992848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.689 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds