Wall clock time and date at job start Sun Mar 29 2020 22:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47293 * 2 1 4 4 C 1.50703 * 109.47193 * 119.99501 * 2 1 3 5 5 O 1.21280 * 119.99823 * 0.02562 * 4 2 1 6 6 N 1.34772 * 120.00309 * 179.97438 * 4 2 1 7 7 C 1.47469 * 125.62913 * 359.92574 * 6 4 2 8 8 C 1.54914 * 104.81081 * 204.13824 * 7 6 4 9 9 H 1.08991 * 111.00370 * 81.13457 * 8 7 6 10 10 N 1.46505 * 111.00244 * 204.94943 * 8 7 6 11 11 C 1.36931 * 119.99788 * 270.41659 * 10 8 7 12 12 H 1.08002 * 120.00438 * 0.02562 * 11 10 8 13 13 C 1.38817 * 119.99680 * 179.72358 * 11 10 8 14 14 N 1.31614 * 119.99888 * 0.27479 * 13 11 10 15 15 Si 1.86803 * 119.99862 * 180.27671 * 13 11 10 16 16 H 1.48508 * 109.46872 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47141 * 119.99997 * 15 13 11 18 18 H 1.48498 * 109.47018 * 240.00044 * 15 13 11 19 19 C 1.55155 * 101.61562 * 323.03927 * 8 7 6 20 20 C 1.47019 * 125.65067 * 180.02562 * 6 4 2 21 21 H 1.09004 * 109.88578 * 59.49179 * 20 6 4 22 22 C 1.52998 * 109.88201 * 298.32758 * 20 6 4 23 23 H 1.09004 * 109.47066 * 300.00435 * 1 2 3 24 24 H 1.08999 * 109.46557 * 60.00536 * 1 2 3 25 25 H 1.08997 * 109.46824 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47448 * 239.99644 * 2 1 3 27 27 H 1.09007 * 109.47056 * 299.99549 * 3 2 1 28 28 H 1.09004 * 109.47420 * 59.99782 * 3 2 1 29 29 H 1.09003 * 109.47674 * 180.02562 * 3 2 1 30 30 H 1.08998 * 110.35117 * 85.31630 * 7 6 4 31 31 H 1.09000 * 110.40237 * 322.98214 * 7 6 4 32 32 H 0.97000 * 119.99792 * 90.41454 * 10 8 7 33 33 H 0.97005 * 119.99715 * 179.97438 * 14 13 11 34 34 H 1.09000 * 110.72115 * 153.84684 * 19 8 7 35 35 H 1.09006 * 110.72066 * 276.94625 * 19 8 7 36 36 H 1.08999 * 109.47400 * 302.18547 * 22 20 6 37 37 H 1.09000 * 109.47113 * 62.19089 * 22 20 6 38 38 H 1.09003 * 109.47072 * 182.18724 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 1.2442 -1.1716 2.0287 6 7 3.3574 -0.8339 1.4436 7 6 4.4210 -0.3251 0.5579 8 6 5.6529 -1.2115 0.8688 9 1 5.5942 -2.1619 0.3385 10 7 6.8987 -0.5104 0.5480 11 6 7.4391 -0.6139 -0.7059 12 1 6.9468 -1.2120 -1.4585 13 6 8.6164 0.0551 -1.0116 14 7 9.2160 0.7843 -0.0946 15 14 9.3496 -0.0798 -2.7244 16 1 8.4903 -0.9535 -3.5633 17 1 9.4299 1.2709 -3.3362 18 1 10.7117 -0.6646 -2.6352 19 6 5.5100 -1.4191 2.3997 20 6 3.9815 -1.4999 2.5962 21 1 3.6674 -2.5429 2.6365 22 6 3.5846 -0.7837 3.8886 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6768 1.9563 -0.8901 28 1 1.6767 1.9564 0.8900 29 1 3.1301 1.4425 -0.0005 30 1 4.6373 0.7185 0.7860 31 1 4.1297 -0.4334 -0.4868 32 1 7.3406 0.0271 1.2238 33 1 10.0389 1.2515 -0.3081 34 1 5.9881 -2.3485 2.7092 35 1 5.9277 -0.5723 2.9444 36 1 3.8853 0.2625 3.8314 37 1 2.5044 -0.8447 4.0208 38 1 4.0816 -1.2587 4.7345 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988129751.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:59 Heat of formation + Delta-G solvation = -35.659268 kcal Electronic energy + Delta-G solvation = -17967.495654 eV Core-core repulsion = 15230.728094 eV Total energy + Delta-G solvation = -2736.767560 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.09411 -37.52149 -34.48613 -34.20931 -31.47853 -31.22520 -28.42046 -27.08310 -25.46726 -24.23186 -23.32652 -20.79320 -20.29995 -18.42692 -17.41612 -16.90911 -15.80929 -15.36352 -14.75206 -14.23383 -13.75352 -13.67463 -13.37620 -13.18990 -12.73759 -12.67203 -12.29850 -12.15924 -12.11990 -11.94657 -11.57759 -11.16973 -11.11036 -10.98938 -10.98480 -10.71629 -10.63065 -10.28829 -10.02579 -9.80606 -9.44632 -9.04556 -8.31184 -7.12632 -5.89165 -3.20050 2.89031 3.26531 3.36436 3.42895 3.44641 4.46988 4.64423 4.93046 5.01792 5.09095 5.13209 5.26173 5.43836 5.49082 5.57451 5.63181 5.69666 5.76519 5.78749 5.82266 5.88712 5.95515 6.08333 6.12626 6.17999 6.22371 6.27003 6.35007 6.46569 6.48349 6.70121 6.82504 7.60087 7.86672 8.28192 8.44380 9.40525 9.94164 10.29168 11.32885 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027454 B = 0.006345 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.644688 B = 4412.063567 C = 5098.127075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.112 4.112 3 C -0.152 4.152 4 C 0.530 3.470 5 O -0.555 6.555 6 N -0.609 5.609 7 C 0.074 3.926 8 C 0.171 3.829 9 H 0.066 0.934 10 N -0.712 5.712 11 C -0.249 4.249 12 H 0.073 0.927 13 C -0.008 4.008 14 N -0.929 5.929 15 Si 0.907 3.093 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.291 1.291 19 C -0.137 4.137 20 C 0.137 3.863 21 H 0.070 0.930 22 C -0.159 4.159 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.387 0.613 33 H 0.257 0.743 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.172 -1.208 2.259 12.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.133 4.133 3 C -0.210 4.210 4 C 0.319 3.681 5 O -0.433 6.433 6 N -0.342 5.342 7 C -0.052 4.052 8 C 0.058 3.942 9 H 0.083 0.917 10 N -0.352 5.352 11 C -0.380 4.380 12 H 0.091 0.909 13 C -0.205 4.205 14 N -0.577 5.577 15 Si 0.738 3.262 16 H -0.204 1.204 17 H -0.217 1.217 18 H -0.218 1.218 19 C -0.176 4.176 20 C 0.034 3.966 21 H 0.088 0.912 22 C -0.218 4.218 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.222 0.778 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.574 -1.478 2.483 12.902 hybrid contribution 0.695 0.253 -0.792 1.084 sum -11.879 -1.225 1.691 12.061 Atomic orbital electron populations 1.21587 0.92865 1.02459 1.01748 1.21236 0.97694 0.97554 0.96800 1.21937 1.02853 0.93881 1.02307 1.20353 0.80696 0.79503 0.87551 1.90630 1.54817 1.50081 1.47816 1.48659 1.05069 1.56304 1.24182 1.23560 0.88429 0.99732 0.93497 1.21315 0.86237 0.94387 0.92218 0.91653 1.42325 1.22531 1.57452 1.12877 1.19295 1.04604 1.25105 0.88949 0.90897 1.24769 0.97998 0.99747 0.97957 1.69668 1.19922 1.35223 1.32842 0.86121 0.78985 0.77283 0.83789 1.20447 1.21750 1.21751 1.23014 0.92894 1.02946 0.98710 1.21493 0.92896 0.96267 0.85968 0.91167 1.22114 1.02433 1.00561 0.96642 0.92167 0.92297 0.92213 0.88738 0.91704 0.92483 0.90786 0.91067 0.91237 0.77846 0.93355 0.90400 0.90400 0.92607 0.91696 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 8.48 37.16 0.32 -1.18 16 2 C -0.11 -1.44 2.61 -91.77 -0.24 -1.68 16 3 C -0.15 -1.83 9.00 37.16 0.33 -1.49 16 4 C 0.53 8.48 7.01 -10.99 -0.08 8.40 16 5 O -0.55 -10.28 15.03 5.56 0.08 -10.19 16 6 N -0.61 -9.60 3.06 -162.98 -0.50 -10.09 16 7 C 0.07 1.22 4.83 -2.50 -0.01 1.21 16 8 C 0.17 3.14 3.70 -65.78 -0.24 2.90 16 9 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 10 N -0.71 -16.50 5.26 -51.35 -0.27 -16.77 16 11 C -0.25 -6.46 9.97 -15.06 -0.15 -6.61 16 12 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 13 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 14 N -0.93 -26.77 13.06 55.49 0.72 -26.04 16 15 Si 0.91 21.38 29.55 -169.99 -5.02 16.36 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 C -0.14 -2.14 6.11 -24.90 -0.15 -2.29 16 20 C 0.14 2.07 3.46 -66.95 -0.23 1.84 16 21 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 22 C -0.16 -2.24 9.10 37.16 0.34 -1.90 16 23 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 26 H 0.09 1.14 7.84 -51.93 -0.41 0.74 16 27 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.97 5.00 -51.93 -0.26 0.72 16 30 H 0.07 1.24 7.07 -51.93 -0.37 0.88 16 31 H 0.07 1.12 7.36 -51.93 -0.38 0.74 16 32 H 0.39 9.58 7.73 -40.82 -0.32 9.26 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.24 7.71 -51.93 -0.40 0.84 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 1.00 6.91 -51.93 -0.36 0.64 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 304.13 15.07 4.58 4.58 Total: -1.00 -29.23 304.13 -6.87 -36.11 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.26 Total: 7.17 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -0.21 Total: -1.12 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.04 Total: -52.91 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.23 -6.87 -36.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988129751.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.446 kcal (2) G-P(sol) polarization free energy of solvation -29.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds