Wall clock time and date at job start Sun Mar 29 2020 22:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47157 * 2 1 4 4 O 1.21283 * 120.00592 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99755 * 179.97438 * 3 2 1 6 6 C 1.46498 * 119.99930 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.52863 * 35.08433 * 6 5 3 8 8 C 1.53042 * 109.50164 * 274.99988 * 6 5 3 9 9 C 1.53031 * 109.54319 * 178.68037 * 8 6 5 10 10 C 1.53197 * 109.30973 * 61.36871 * 9 8 6 11 11 N 1.46926 * 108.77564 * 305.36399 * 10 9 8 12 12 C 1.36935 * 120.62973 * 233.33217 * 11 10 9 13 13 H 1.08005 * 119.99527 * 150.20624 * 12 11 10 14 14 C 1.38805 * 120.00403 * 330.20775 * 12 11 10 15 15 N 1.31622 * 119.99962 * 344.53851 * 14 12 11 16 16 Si 1.86795 * 120.00332 * 164.54308 * 14 12 11 17 17 H 1.48504 * 109.47268 * 89.99585 * 16 14 12 18 18 H 1.48502 * 109.47416 * 209.99914 * 16 14 12 19 19 H 1.48507 * 109.47127 * 329.99639 * 16 14 12 20 20 C 1.46925 * 118.73929 * 53.60966 * 11 10 9 21 21 H 1.08997 * 109.58689 * 66.17117 * 20 11 10 22 22 C 1.52998 * 109.58696 * 186.60442 * 20 11 10 23 23 H 1.09000 * 109.46996 * 300.00734 * 1 2 3 24 24 H 1.09000 * 109.46705 * 60.00099 * 1 2 3 25 25 H 1.08998 * 109.47569 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47243 * 239.99642 * 2 1 3 27 27 H 1.09000 * 109.46705 * 119.99901 * 2 1 3 28 28 H 0.97000 * 120.00270 * 359.97438 * 5 3 2 29 29 H 1.09010 * 109.45894 * 58.66203 * 8 6 5 30 30 H 1.08997 * 109.45961 * 298.71051 * 8 6 5 31 31 H 1.08995 * 109.50362 * 301.41921 * 9 8 6 32 32 H 1.09000 * 109.50238 * 181.31743 * 9 8 6 33 33 H 1.09005 * 109.58529 * 185.57842 * 10 9 8 34 34 H 1.08998 * 109.70862 * 65.22257 * 10 9 8 35 35 H 0.96995 * 120.00418 * 180.02562 * 15 14 12 36 36 H 1.08995 * 109.46920 * 60.00118 * 22 20 11 37 37 H 1.09004 * 109.46978 * 179.97438 * 22 20 11 38 38 H 1.08993 * 109.47305 * 299.99609 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8459 3.0481 0.0000 7 1 3.1745 3.6723 0.5897 8 6 3.8984 3.5709 -1.4375 9 6 4.3771 5.0244 -1.4364 10 6 5.7889 5.0923 -0.8455 11 7 5.7774 4.4598 0.4806 12 6 6.2529 5.1287 1.5768 13 1 5.8419 4.9243 2.5544 14 6 7.2632 6.0695 1.4315 15 7 7.9716 6.1085 0.3229 16 14 7.6175 7.2799 2.8094 17 1 8.6292 6.7006 3.7293 18 1 8.1387 8.5460 2.2343 19 1 6.3662 7.5556 3.5601 20 6 5.2516 3.0937 0.6072 21 1 5.9025 2.4008 0.0740 22 6 5.1846 2.7048 2.0854 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9878 0.9297 0.0013 29 1 2.9037 3.5165 -1.8802 30 1 4.5888 2.9615 -2.0205 31 1 3.7007 5.6299 -0.8332 32 1 4.3919 5.4034 -2.4583 33 1 6.0956 6.1340 -0.7508 34 1 6.4856 4.5640 -1.4962 35 1 8.6778 6.7657 0.2215 36 1 4.5279 3.3961 2.6135 37 1 4.7940 1.6913 2.1771 38 1 6.1837 2.7500 2.5187 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992931338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:50 Heat of formation + Delta-G solvation = -33.062629 kcal Electronic energy + Delta-G solvation = -18159.587257 eV Core-core repulsion = 15422.932296 eV Total energy + Delta-G solvation = -2736.654961 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.69946 -37.65214 -34.26224 -32.86804 -32.39723 -31.58257 -29.18344 -26.32676 -25.07216 -24.23663 -21.80983 -20.67388 -20.01614 -19.23671 -16.93862 -16.34712 -15.63843 -15.47086 -14.85186 -14.01564 -13.84916 -13.73952 -13.41077 -13.16499 -12.70161 -12.54887 -12.31527 -11.77051 -11.65654 -11.52829 -11.21126 -11.08135 -10.92181 -10.73144 -10.55883 -10.28074 -10.11390 -10.03555 -9.85119 -9.53573 -9.30546 -8.62176 -8.44166 -6.65772 -5.79478 -3.24072 2.89995 3.37039 3.44012 3.45680 3.50991 4.49482 4.84440 5.05930 5.06199 5.30763 5.39167 5.50476 5.56232 5.64313 5.73282 5.81672 5.88817 5.98476 6.10810 6.17161 6.23068 6.35408 6.42062 6.54983 6.65918 6.75320 6.77263 6.87766 7.00418 7.09518 7.40447 7.66804 7.81440 7.83362 8.44094 8.53439 9.20434 9.83151 10.40109 11.29252 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040119 B = 0.006138 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.751882 B = 4560.285410 C = 4868.717612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.145 4.145 3 C 0.507 3.493 4 O -0.546 6.546 5 N -0.721 5.721 6 C 0.130 3.870 7 H 0.084 0.916 8 C -0.116 4.116 9 C -0.140 4.140 10 C 0.170 3.830 11 N -0.582 5.582 12 C -0.252 4.252 13 H 0.069 0.931 14 C 0.005 3.995 15 N -0.902 5.902 16 Si 0.901 3.099 17 H -0.287 1.287 18 H -0.290 1.290 19 H -0.279 1.279 20 C 0.167 3.833 21 H 0.027 0.973 22 C -0.136 4.136 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.395 0.605 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.019 0.981 35 H 0.253 0.747 36 H 0.053 0.947 37 H 0.038 0.962 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.369 -11.190 -1.797 14.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.186 4.186 3 C 0.293 3.707 4 O -0.423 6.423 5 N -0.371 5.371 6 C 0.024 3.976 7 H 0.102 0.898 8 C -0.155 4.155 9 C -0.180 4.180 10 C 0.045 3.955 11 N -0.306 5.306 12 C -0.382 4.382 13 H 0.087 0.913 14 C -0.194 4.194 15 N -0.546 5.546 16 Si 0.731 3.269 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.204 1.204 20 C 0.059 3.941 21 H 0.044 0.956 22 C -0.193 4.193 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.229 0.771 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.037 0.963 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.777 -10.384 -1.818 13.718 hybrid contribution 0.658 0.270 0.554 0.901 sum -8.119 -10.115 -1.264 13.032 Atomic orbital electron populations 1.21506 0.93348 1.01135 1.03321 1.21636 0.98452 0.94464 1.04003 1.20704 0.82516 0.91489 0.76035 1.90688 1.55359 1.46566 1.49727 1.46192 1.06686 1.09605 1.74643 1.21760 0.97940 0.80918 0.96989 0.89750 1.21752 0.99903 0.97585 0.96251 1.22177 1.01142 0.94845 0.99830 1.20816 0.89994 0.99901 0.84809 1.44035 1.71507 1.09507 1.05504 1.19145 1.13150 1.17592 0.88307 0.91293 1.25084 0.95722 1.01336 0.97239 1.70025 1.21608 1.36314 1.26689 0.86324 0.78081 0.80921 0.81608 1.21396 1.21567 1.20430 1.20567 0.90259 0.88903 0.94324 0.95577 1.21809 1.02257 0.98604 0.96673 0.92053 0.92104 0.92438 0.89262 0.89195 0.77116 0.93285 0.92850 0.92537 0.93045 0.89550 0.96283 0.93656 0.92743 0.94333 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.20 37.16 0.34 -1.03 16 2 C -0.15 -1.45 6.42 -27.88 -0.18 -1.63 16 3 C 0.51 7.49 7.79 -10.99 -0.09 7.41 16 4 O -0.55 -10.45 15.65 5.56 0.09 -10.36 16 5 N -0.72 -10.46 4.59 -53.69 -0.25 -10.71 16 6 C 0.13 2.38 1.99 -67.81 -0.14 2.25 16 7 H 0.08 1.80 7.58 -51.93 -0.39 1.41 16 8 C -0.12 -2.13 5.46 -26.69 -0.15 -2.28 16 9 C -0.14 -2.81 6.08 -26.61 -0.16 -2.97 16 10 C 0.17 4.06 5.27 -3.71 -0.02 4.04 16 11 N -0.58 -14.26 2.99 -164.77 -0.49 -14.75 16 12 C -0.25 -6.74 8.56 -15.06 -0.13 -6.87 16 13 H 0.07 1.81 6.25 -52.48 -0.33 1.48 16 14 C 0.00 0.13 4.94 -17.43 -0.09 0.05 16 15 N -0.90 -25.82 11.23 55.49 0.62 -25.19 16 16 Si 0.90 21.53 29.58 -169.99 -5.03 16.51 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.17 3.38 3.03 -67.60 -0.20 3.17 16 21 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 22 C -0.14 -2.53 7.83 37.16 0.29 -2.24 16 23 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 24 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.40 4.60 8.60 -40.82 -0.35 4.25 16 29 H 0.05 0.90 8.14 -51.92 -0.42 0.47 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 2.30 6.16 -51.93 -0.32 1.98 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.05 1.07 7.45 -51.93 -0.39 0.68 16 37 H 0.04 0.58 7.80 -51.93 -0.41 0.18 16 38 H 0.06 1.27 7.62 -51.93 -0.40 0.88 16 LS Contribution 301.19 15.07 4.54 4.54 Total: -1.00 -30.77 301.19 -7.39 -38.17 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.36 Total: 1.91 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -0.51 Total: -0.10 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.11 Total: -50.66 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.77 -7.39 -38.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992931338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.104 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds