Wall clock time and date at job start Sun Mar 29 2020 22:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47157 * 2 1 4 4 O 1.21283 * 120.00592 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99755 * 179.97438 * 3 2 1 6 6 C 1.46498 * 119.99930 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.52863 * 35.08433 * 6 5 3 8 8 C 1.53042 * 109.50164 * 274.99988 * 6 5 3 9 9 C 1.53031 * 109.54319 * 178.68037 * 8 6 5 10 10 C 1.53197 * 109.30973 * 61.36871 * 9 8 6 11 11 N 1.46926 * 108.77564 * 305.36399 * 10 9 8 12 12 C 1.36935 * 120.62973 * 233.33217 * 11 10 9 13 13 H 1.08005 * 119.99527 * 150.20624 * 12 11 10 14 14 C 1.38805 * 120.00403 * 330.20775 * 12 11 10 15 15 N 1.31622 * 119.99962 * 344.53851 * 14 12 11 16 16 Si 1.86795 * 120.00332 * 164.54308 * 14 12 11 17 17 H 1.48504 * 109.47268 * 89.99585 * 16 14 12 18 18 H 1.48502 * 109.47416 * 209.99914 * 16 14 12 19 19 H 1.48507 * 109.47127 * 329.99639 * 16 14 12 20 20 C 1.46925 * 118.73929 * 53.60966 * 11 10 9 21 21 H 1.08997 * 109.58689 * 66.17117 * 20 11 10 22 22 C 1.52998 * 109.58696 * 186.60442 * 20 11 10 23 23 H 1.09000 * 109.46996 * 300.00734 * 1 2 3 24 24 H 1.09000 * 109.46705 * 60.00099 * 1 2 3 25 25 H 1.08998 * 109.47569 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47243 * 239.99642 * 2 1 3 27 27 H 1.09000 * 109.46705 * 119.99901 * 2 1 3 28 28 H 0.97000 * 120.00270 * 359.97438 * 5 3 2 29 29 H 1.09010 * 109.45894 * 58.66203 * 8 6 5 30 30 H 1.08997 * 109.45961 * 298.71051 * 8 6 5 31 31 H 1.08995 * 109.50362 * 301.41921 * 9 8 6 32 32 H 1.09000 * 109.50238 * 181.31743 * 9 8 6 33 33 H 1.09005 * 109.58529 * 185.57842 * 10 9 8 34 34 H 1.08998 * 109.70862 * 65.22257 * 10 9 8 35 35 H 0.96995 * 120.00418 * 180.02562 * 15 14 12 36 36 H 1.08995 * 109.46920 * 60.00118 * 22 20 11 37 37 H 1.09004 * 109.46978 * 179.97438 * 22 20 11 38 38 H 1.08993 * 109.47305 * 299.99609 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8459 3.0481 0.0000 7 1 3.1745 3.6723 0.5897 8 6 3.8984 3.5709 -1.4375 9 6 4.3771 5.0244 -1.4364 10 6 5.7889 5.0923 -0.8455 11 7 5.7774 4.4598 0.4806 12 6 6.2529 5.1287 1.5768 13 1 5.8419 4.9243 2.5544 14 6 7.2632 6.0695 1.4315 15 7 7.9716 6.1085 0.3229 16 14 7.6175 7.2799 2.8094 17 1 8.6292 6.7006 3.7293 18 1 8.1387 8.5460 2.2343 19 1 6.3662 7.5556 3.5601 20 6 5.2516 3.0937 0.6072 21 1 5.9025 2.4008 0.0740 22 6 5.1846 2.7048 2.0854 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9878 0.9297 0.0013 29 1 2.9037 3.5165 -1.8802 30 1 4.5888 2.9615 -2.0205 31 1 3.7007 5.6299 -0.8332 32 1 4.3919 5.4034 -2.4583 33 1 6.0956 6.1340 -0.7508 34 1 6.4856 4.5640 -1.4962 35 1 8.6778 6.7657 0.2215 36 1 4.5279 3.3961 2.6135 37 1 4.7940 1.6913 2.1771 38 1 6.1837 2.7500 2.5187 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992931338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:50 Heat of formation + Delta-G solvation = -53.262834 kcal Electronic energy + Delta-G solvation = -18160.463204 eV Core-core repulsion = 15422.932296 eV Total energy + Delta-G solvation = -2737.530908 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.01477 -39.23489 -35.86851 -34.30168 -33.63778 -33.27257 -30.87322 -27.94627 -26.90650 -25.40274 -23.38892 -22.32650 -21.31577 -20.83158 -18.37643 -17.93759 -17.26855 -16.66724 -16.44777 -15.61738 -15.58748 -15.20918 -14.82588 -14.68183 -14.32094 -14.01797 -13.39889 -13.32642 -12.98841 -12.79795 -12.72324 -12.58986 -12.50245 -12.37651 -12.03203 -11.97115 -11.81808 -11.77224 -11.61515 -11.17729 -10.73939 -10.52946 -9.94701 -8.64379 -7.86064 -5.32443 1.45877 1.48565 1.57175 1.76228 2.27238 2.55381 3.29805 3.62453 3.84671 3.95949 4.05948 4.20546 4.30509 4.33997 4.36192 4.52734 4.62342 4.74453 4.82868 4.89324 4.93058 5.02395 5.04243 5.11119 5.13606 5.24385 5.29849 5.38976 5.45837 5.51574 5.63038 5.70147 5.76317 6.41888 6.69992 7.16258 7.40123 7.86599 8.38569 9.20947 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040119 B = 0.006138 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.751882 B = 4560.285410 C = 4868.717612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 C 0.501 3.499 4 O -0.595 6.595 5 N -0.710 5.710 6 C 0.145 3.855 7 H 0.052 0.948 8 C -0.108 4.108 9 C -0.130 4.130 10 C 0.177 3.823 11 N -0.601 5.601 12 C -0.255 4.255 13 H 0.070 0.930 14 C -0.047 4.047 15 N -0.933 5.933 16 Si 0.961 3.039 17 H -0.282 1.282 18 H -0.294 1.294 19 H -0.275 1.275 20 C 0.164 3.836 21 H 0.034 0.966 22 C -0.127 4.127 23 H 0.042 0.958 24 H 0.043 0.957 25 H 0.088 0.912 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.414 0.586 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.005 0.995 35 H 0.249 0.751 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.115 -13.497 -1.630 16.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.174 4.174 3 C 0.290 3.710 4 O -0.475 6.475 5 N -0.362 5.362 6 C 0.038 3.962 7 H 0.070 0.930 8 C -0.147 4.147 9 C -0.170 4.170 10 C 0.051 3.949 11 N -0.325 5.325 12 C -0.386 4.386 13 H 0.088 0.912 14 C -0.242 4.242 15 N -0.579 5.579 16 Si 0.789 3.211 17 H -0.209 1.209 18 H -0.220 1.220 19 H -0.200 1.200 20 C 0.057 3.943 21 H 0.052 0.948 22 C -0.184 4.184 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.106 0.894 26 H 0.137 0.863 27 H 0.136 0.864 28 H 0.251 0.749 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.023 0.977 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.529 -12.747 -1.643 16.000 hybrid contribution 0.845 0.933 0.492 1.351 sum -8.685 -11.815 -1.152 14.709 Atomic orbital electron populations 1.21530 0.93660 1.02569 1.01649 1.21697 0.98013 0.90974 1.06741 1.21657 0.81777 0.93177 0.74375 1.90678 1.56471 1.48601 1.51792 1.46002 1.07365 1.08367 1.74464 1.21244 0.95899 0.82843 0.96217 0.92981 1.21672 1.00228 0.96339 0.96475 1.22021 0.98272 0.96310 1.00385 1.20611 0.91750 0.97667 0.84835 1.44279 1.71700 1.11457 1.05072 1.19421 1.12504 1.17583 0.89049 0.91202 1.25764 0.96056 1.03085 0.99328 1.70162 1.22305 1.37004 1.28439 0.85384 0.77881 0.78654 0.79181 1.20910 1.22027 1.19970 1.20737 0.90995 0.86809 0.95741 0.94835 1.21722 1.01176 1.00452 0.95099 0.93873 0.93758 0.89357 0.86276 0.86353 0.74950 0.92892 0.91492 0.93942 0.90958 0.92928 0.97700 0.94199 0.94343 0.90419 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.20 71.98 0.66 -1.73 16 2 C -0.13 -2.15 6.42 29.85 0.19 -1.96 16 3 C 0.50 13.63 7.79 87.65 0.68 14.32 16 4 O -0.59 -22.33 15.65 -3.04 -0.05 -22.37 16 5 N -0.71 -18.69 4.59 -442.15 -2.03 -20.72 16 6 C 0.15 5.16 1.99 45.07 0.09 5.25 16 7 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 8 C -0.11 -3.84 5.46 30.62 0.17 -3.67 16 9 C -0.13 -5.21 6.08 30.67 0.19 -5.02 16 10 C 0.18 8.59 5.27 86.36 0.46 9.05 16 11 N -0.60 -29.73 2.99 -675.21 -2.02 -31.75 16 12 C -0.26 -13.81 8.56 84.03 0.72 -13.09 16 13 H 0.07 3.69 6.25 -2.91 -0.02 3.67 16 14 C -0.05 -2.60 4.94 84.86 0.42 -2.18 16 15 N -0.93 -54.70 11.23 21.65 0.24 -54.46 16 16 Si 0.96 44.94 29.58 68.60 2.03 46.97 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 18 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 20 C 0.16 6.46 3.03 44.98 0.14 6.60 16 21 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 22 C -0.13 -4.55 7.83 71.98 0.56 -3.99 16 23 H 0.04 0.90 8.10 -2.39 -0.02 0.89 16 24 H 0.04 0.91 8.10 -2.39 -0.02 0.90 16 25 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.41 7.99 8.60 -92.71 -0.80 7.19 16 29 H 0.05 1.85 8.14 -2.38 -0.02 1.84 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.05 2.90 6.16 -2.38 -0.01 2.88 16 34 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 36 H 0.04 1.48 7.45 -2.39 -0.02 1.46 16 37 H 0.08 2.13 7.80 -2.39 -0.02 2.11 16 38 H 0.05 1.90 7.62 -2.39 -0.02 1.88 16 Total: -1.00 -68.58 301.19 2.69 -65.89 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.23 Total: 12.86 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 4.27 Total: 3.58 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -3.80 Total: -106.92 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.05 Total: -22.37 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -68.58 2.69 -65.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992931338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.624 kcal (2) G-P(sol) polarization free energy of solvation -68.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds