Wall clock time and date at job start Sun Mar 29 2020 22:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47232 * 2 1 4 4 O 1.21282 * 119.99910 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00280 * 179.97438 * 3 2 1 6 6 C 1.47426 * 125.64489 * 0.04405 * 5 3 2 7 7 C 1.54914 * 104.82992 * 204.09098 * 6 5 3 8 8 H 1.09000 * 111.00339 * 81.07133 * 7 6 5 9 9 N 1.46505 * 111.00202 * 204.91694 * 7 6 5 10 10 C 1.36935 * 120.00217 * 273.54861 * 9 7 6 11 11 H 1.08006 * 119.99642 * 359.97438 * 10 9 7 12 12 C 1.38808 * 120.00007 * 180.02562 * 10 9 7 13 13 N 1.31623 * 119.99572 * 179.97438 * 12 10 9 14 14 Si 1.86791 * 120.00139 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47224 * 90.00046 * 14 12 10 16 16 H 1.48503 * 109.47388 * 210.00158 * 14 12 10 17 17 H 1.48501 * 109.47319 * 330.00053 * 14 12 10 18 18 C 1.55405 * 101.66697 * 323.07703 * 7 6 5 19 19 C 1.53004 * 110.69383 * 277.04914 * 18 7 6 20 20 C 1.52995 * 110.85058 * 153.70010 * 18 7 6 21 21 C 1.47018 * 125.64993 * 180.02562 * 5 3 2 22 22 H 1.08994 * 109.47553 * 59.99882 * 1 2 3 23 23 H 1.09005 * 109.47561 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47080 * 299.99496 * 1 2 3 25 25 H 1.09001 * 109.47080 * 240.00503 * 2 1 3 26 26 H 1.09003 * 109.47031 * 120.00352 * 2 1 3 27 27 H 1.08999 * 110.36956 * 322.93474 * 6 5 3 28 28 H 1.09001 * 110.36709 * 85.14667 * 6 5 3 29 29 H 0.96998 * 119.99743 * 93.55096 * 9 7 6 30 30 H 0.97003 * 119.99397 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.47052 * 174.82391 * 19 18 7 32 32 H 1.08993 * 109.46847 * 294.82366 * 19 18 7 33 33 H 1.09005 * 109.46970 * 54.82480 * 19 18 7 34 34 H 1.08999 * 109.47083 * 305.08524 * 20 18 7 35 35 H 1.09002 * 109.47293 * 65.08533 * 20 18 7 36 36 H 1.09000 * 109.47062 * 185.08628 * 20 18 7 37 37 H 1.09002 * 109.88241 * 298.39592 * 21 5 3 38 38 H 1.09000 * 109.88049 * 59.40721 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.4210 0.6462 0.0002 7 6 5.6535 1.3576 0.6123 8 1 5.5954 1.3728 1.7006 9 7 6.8988 0.7294 0.1638 10 6 7.4056 -0.3469 0.8419 11 1 6.8875 -0.7324 1.7076 12 6 8.5857 -0.9417 0.4172 13 7 9.0730 -1.9760 1.0694 14 14 9.4820 -0.2745 -1.0796 15 1 10.4514 0.7664 -0.6528 16 1 10.2080 -1.3797 -1.7553 17 1 8.4993 0.3204 -2.0207 18 6 5.5105 2.7912 0.0296 19 6 6.0931 2.8610 -1.3835 20 6 6.1789 3.8198 0.9438 21 6 3.9815 2.9982 0.0011 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 4.1299 -0.2051 0.6155 28 1 4.6351 0.3218 -1.0181 29 1 7.3642 1.0760 -0.6135 30 1 9.8979 -2.3914 0.7728 31 1 5.9008 3.8466 -1.8074 32 1 7.1682 2.6868 -1.3422 33 1 5.6252 2.0995 -2.0075 34 1 5.7713 3.7302 1.9507 35 1 7.2536 3.6391 0.9695 36 1 5.9882 4.8230 0.5625 37 1 3.6978 3.5411 -0.9005 38 1 3.6662 3.5550 0.8835 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995291161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:20 Heat of formation + Delta-G solvation = -30.499153 kcal Electronic energy + Delta-G solvation = -18083.360584 eV Core-core repulsion = 15346.816783 eV Total energy + Delta-G solvation = -2736.543801 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.10366 -38.13765 -34.27226 -33.37460 -32.49617 -31.16732 -27.95670 -27.22130 -26.78759 -23.97781 -23.39340 -21.26446 -19.09939 -18.70553 -17.68138 -16.80136 -16.10148 -15.30009 -14.88721 -14.45468 -14.00523 -13.79509 -13.42859 -13.23949 -12.80050 -12.70767 -12.32802 -12.22286 -12.07502 -11.74950 -11.60435 -11.48321 -11.38777 -11.11891 -11.05527 -10.67844 -10.58167 -10.37100 -9.94507 -9.68824 -9.63172 -9.07556 -8.38568 -7.42041 -5.88383 -3.25965 2.82712 3.21007 3.28206 3.30914 3.38067 4.48116 4.54177 4.87355 4.93155 4.99123 5.13374 5.15034 5.34742 5.41827 5.55845 5.59699 5.62520 5.68628 5.79094 5.83291 5.86336 5.92960 5.98382 6.08614 6.15681 6.18049 6.20583 6.30832 6.43500 6.45677 6.55690 6.72267 7.76153 7.86691 8.30451 8.36217 9.07562 9.79590 9.98242 11.29368 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026284 B = 0.007129 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.049860 B = 3926.570376 C = 4563.220257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.141 4.141 3 C 0.524 3.476 4 O -0.556 6.556 5 N -0.615 5.615 6 C 0.074 3.926 7 C 0.186 3.814 8 H 0.073 0.927 9 N -0.735 5.735 10 C -0.252 4.252 11 H 0.092 0.908 12 C 0.011 3.989 13 N -0.929 5.929 14 Si 0.879 3.121 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.276 1.276 18 C -0.090 4.090 19 C -0.136 4.136 20 C -0.130 4.130 21 C 0.121 3.879 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.366 0.634 30 H 0.261 0.739 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.082 7.292 -3.315 12.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.181 4.181 3 C 0.314 3.686 4 O -0.436 6.436 5 N -0.348 5.348 6 C -0.052 4.052 7 C 0.075 3.925 8 H 0.091 0.909 9 N -0.379 5.379 10 C -0.382 4.382 11 H 0.110 0.890 12 C -0.186 4.186 13 N -0.575 5.575 14 Si 0.709 3.291 15 H -0.209 1.209 16 H -0.216 1.216 17 H -0.202 1.202 18 C -0.091 4.091 19 C -0.194 4.194 20 C -0.188 4.188 21 C -0.002 4.002 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.202 0.798 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.491 7.551 -3.150 13.304 hybrid contribution 0.860 0.191 -1.122 1.426 sum -9.631 7.742 -4.272 13.075 Atomic orbital electron populations 1.21516 0.93306 1.01322 1.03040 1.21603 0.98057 0.93890 1.04552 1.20456 0.80508 0.91780 0.75898 1.90655 1.54716 1.46851 1.51328 1.48547 1.05227 1.08707 1.72351 1.23421 0.88233 0.91677 1.01837 1.21353 0.85480 0.88446 0.97265 0.90876 1.42770 1.23965 1.36705 1.34416 1.19066 1.05148 1.04585 1.09362 0.89021 1.24657 0.97741 0.97607 0.98577 1.69696 1.22564 1.23813 1.41474 0.86647 0.80167 0.78459 0.83814 1.20882 1.21567 1.20236 1.21919 0.93053 0.97455 0.96699 1.21754 1.01339 1.01298 0.94965 1.21701 1.01388 0.97135 0.98545 1.21978 0.91776 0.84928 1.01544 0.92235 0.92213 0.92154 0.89028 0.88829 0.90731 0.91292 0.79804 0.92895 0.92730 0.91920 0.92369 0.92435 0.91557 0.92962 0.91924 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.20 37.16 0.34 -1.16 16 2 C -0.14 -1.73 5.43 -27.89 -0.15 -1.88 16 3 C 0.52 8.24 7.85 -10.99 -0.09 8.15 16 4 O -0.56 -10.34 16.31 5.56 0.09 -10.25 16 5 N -0.61 -9.50 3.33 -170.52 -0.57 -10.07 16 6 C 0.07 1.20 6.07 -2.53 -0.02 1.18 16 7 C 0.19 3.29 2.93 -65.64 -0.19 3.10 16 8 H 0.07 1.35 8.03 -51.93 -0.42 0.94 16 9 N -0.74 -15.81 4.97 -51.21 -0.25 -16.07 16 10 C -0.25 -6.59 10.47 -15.06 -0.16 -6.74 16 11 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 12 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 13 N -0.93 -27.86 13.97 55.49 0.78 -27.09 16 14 Si 0.88 20.90 27.73 -169.99 -4.71 16.19 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.12 6.52 56.52 0.37 -5.75 16 18 C -0.09 -1.32 0.86 -152.54 -0.13 -1.45 16 19 C -0.14 -1.95 7.60 37.16 0.28 -1.67 16 20 C -0.13 -1.73 8.50 37.15 0.32 -1.41 16 21 C 0.12 1.77 6.04 -3.07 -0.02 1.75 16 22 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.09 1.06 7.85 -51.93 -0.41 0.65 16 27 H 0.07 1.18 7.48 -51.93 -0.39 0.80 16 28 H 0.07 1.15 7.73 -51.93 -0.40 0.75 16 29 H 0.37 7.77 3.25 -40.82 -0.13 7.64 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.96 6.66 -51.93 -0.35 0.62 16 33 H 0.06 0.86 7.46 -51.93 -0.39 0.48 16 34 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.90 7.84 -51.93 -0.41 0.49 16 38 H 0.07 0.95 7.82 -51.93 -0.41 0.55 16 LS Contribution 303.01 15.07 4.57 4.57 Total: -1.00 -30.33 303.01 -6.27 -36.60 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.26 Total: 6.05 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 0.09 Total: 0.06 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.05 Total: -53.22 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.71 Total: 16.19 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.33 -6.27 -36.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995291161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.104 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds