Wall clock time and date at job start Sun Mar 29 2020 22:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47232 * 2 1 4 4 O 1.21282 * 119.99910 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00280 * 179.97438 * 3 2 1 6 6 C 1.47426 * 125.64489 * 0.04405 * 5 3 2 7 7 C 1.54914 * 104.82992 * 204.09098 * 6 5 3 8 8 H 1.09000 * 111.00339 * 81.07133 * 7 6 5 9 9 N 1.46505 * 111.00202 * 204.91694 * 7 6 5 10 10 C 1.36935 * 120.00217 * 273.54861 * 9 7 6 11 11 H 1.08006 * 119.99642 * 359.97438 * 10 9 7 12 12 C 1.38808 * 120.00007 * 180.02562 * 10 9 7 13 13 N 1.31623 * 119.99572 * 179.97438 * 12 10 9 14 14 Si 1.86791 * 120.00139 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47224 * 90.00046 * 14 12 10 16 16 H 1.48503 * 109.47388 * 210.00158 * 14 12 10 17 17 H 1.48501 * 109.47319 * 330.00053 * 14 12 10 18 18 C 1.55405 * 101.66697 * 323.07703 * 7 6 5 19 19 C 1.53004 * 110.69383 * 277.04914 * 18 7 6 20 20 C 1.52995 * 110.85058 * 153.70010 * 18 7 6 21 21 C 1.47018 * 125.64993 * 180.02562 * 5 3 2 22 22 H 1.08994 * 109.47553 * 59.99882 * 1 2 3 23 23 H 1.09005 * 109.47561 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47080 * 299.99496 * 1 2 3 25 25 H 1.09001 * 109.47080 * 240.00503 * 2 1 3 26 26 H 1.09003 * 109.47031 * 120.00352 * 2 1 3 27 27 H 1.08999 * 110.36956 * 322.93474 * 6 5 3 28 28 H 1.09001 * 110.36709 * 85.14667 * 6 5 3 29 29 H 0.96998 * 119.99743 * 93.55096 * 9 7 6 30 30 H 0.97003 * 119.99397 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.47052 * 174.82391 * 19 18 7 32 32 H 1.08993 * 109.46847 * 294.82366 * 19 18 7 33 33 H 1.09005 * 109.46970 * 54.82480 * 19 18 7 34 34 H 1.08999 * 109.47083 * 305.08524 * 20 18 7 35 35 H 1.09002 * 109.47293 * 65.08533 * 20 18 7 36 36 H 1.09000 * 109.47062 * 185.08628 * 20 18 7 37 37 H 1.09002 * 109.88241 * 298.39592 * 21 5 3 38 38 H 1.09000 * 109.88049 * 59.40721 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.4210 0.6462 0.0002 7 6 5.6535 1.3576 0.6123 8 1 5.5954 1.3728 1.7006 9 7 6.8988 0.7294 0.1638 10 6 7.4056 -0.3469 0.8419 11 1 6.8875 -0.7324 1.7076 12 6 8.5857 -0.9417 0.4172 13 7 9.0730 -1.9760 1.0694 14 14 9.4820 -0.2745 -1.0796 15 1 10.4514 0.7664 -0.6528 16 1 10.2080 -1.3797 -1.7553 17 1 8.4993 0.3204 -2.0207 18 6 5.5105 2.7912 0.0296 19 6 6.0931 2.8610 -1.3835 20 6 6.1789 3.8198 0.9438 21 6 3.9815 2.9982 0.0011 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 4.1299 -0.2051 0.6155 28 1 4.6351 0.3218 -1.0181 29 1 7.3642 1.0760 -0.6135 30 1 9.8979 -2.3914 0.7728 31 1 5.9008 3.8466 -1.8074 32 1 7.1682 2.6868 -1.3422 33 1 5.6252 2.0995 -2.0075 34 1 5.7713 3.7302 1.9507 35 1 7.2536 3.6391 0.9695 36 1 5.9882 4.8230 0.5625 37 1 3.6978 3.5411 -0.9005 38 1 3.6662 3.5550 0.8835 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995291161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:19 Heat of formation + Delta-G solvation = -49.896605 kcal Electronic energy + Delta-G solvation = -18084.201721 eV Core-core repulsion = 15346.816783 eV Total energy + Delta-G solvation = -2737.384937 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.38017 -39.44833 -35.97825 -34.71708 -33.56836 -33.02229 -29.49142 -28.34602 -27.91604 -25.64416 -24.58089 -22.75412 -20.54617 -19.98382 -19.40471 -18.04591 -17.39453 -16.58483 -16.49416 -15.97959 -15.33033 -15.14762 -14.77569 -14.59305 -14.38127 -13.93658 -13.62828 -13.44380 -13.18023 -13.12464 -12.97498 -12.81521 -12.63819 -12.59746 -12.20291 -12.06519 -11.93693 -11.86945 -11.65104 -11.29773 -11.02311 -10.86918 -9.70541 -9.30958 -8.00244 -5.34849 1.39615 1.42262 1.49267 1.59777 1.99894 2.49804 3.27088 3.31130 3.59950 3.77424 3.78272 3.97726 4.19304 4.20171 4.25573 4.33198 4.39997 4.59137 4.70289 4.76641 4.80421 4.85353 4.95882 4.98498 5.01298 5.04701 5.13713 5.14106 5.25043 5.32540 5.38685 5.46149 5.79817 6.23369 6.50938 7.08350 7.12915 7.82983 8.02699 9.20743 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026284 B = 0.007129 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.049860 B = 3926.570376 C = 4563.220257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.139 4.139 3 C 0.519 3.481 4 O -0.587 6.587 5 N -0.614 5.614 6 C 0.086 3.914 7 C 0.176 3.824 8 H 0.061 0.939 9 N -0.735 5.735 10 C -0.229 4.229 11 H 0.062 0.938 12 C -0.057 4.057 13 N -0.981 5.981 14 Si 0.942 3.058 15 H -0.279 1.279 16 H -0.299 1.299 17 H -0.249 1.249 18 C -0.079 4.079 19 C -0.136 4.136 20 C -0.129 4.129 21 C 0.120 3.880 22 H 0.050 0.950 23 H 0.085 0.915 24 H 0.049 0.951 25 H 0.106 0.894 26 H 0.104 0.896 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.371 0.629 30 H 0.257 0.743 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.820 8.594 -4.694 14.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.179 4.179 3 C 0.310 3.690 4 O -0.468 6.468 5 N -0.347 5.347 6 C -0.040 4.040 7 C 0.066 3.934 8 H 0.079 0.921 9 N -0.379 5.379 10 C -0.360 4.360 11 H 0.080 0.920 12 C -0.248 4.248 13 N -0.631 5.631 14 Si 0.770 3.230 15 H -0.205 1.205 16 H -0.226 1.226 17 H -0.173 1.173 18 C -0.081 4.081 19 C -0.194 4.194 20 C -0.186 4.186 21 C -0.002 4.002 22 H 0.070 0.930 23 H 0.103 0.897 24 H 0.068 0.932 25 H 0.124 0.876 26 H 0.122 0.878 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.207 0.793 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.273 8.899 -4.541 15.063 hybrid contribution 0.991 -0.181 -0.607 1.176 sum -10.281 8.718 -5.148 14.429 Atomic orbital electron populations 1.21508 0.92482 1.02707 1.02140 1.21688 0.98753 0.91724 1.05700 1.21081 0.80114 0.92882 0.74932 1.90641 1.55275 1.48132 1.52785 1.48584 1.05209 1.08812 1.72142 1.23130 0.87682 0.91594 1.01595 1.21503 0.84454 0.90606 0.96879 0.92098 1.42674 1.25301 1.35713 1.34217 1.19014 1.04241 1.04769 1.07990 0.92015 1.25395 0.99108 0.98330 1.02013 1.69871 1.23313 1.26039 1.43861 0.85608 0.79240 0.77530 0.80622 1.20509 1.22584 1.17294 1.21868 0.93409 0.95514 0.97279 1.21768 1.00474 1.02749 0.94373 1.21699 1.00387 0.98054 0.98457 1.22035 0.91400 0.84722 1.02077 0.93035 0.89667 0.93163 0.87578 0.87758 0.90636 0.91293 0.79276 0.93403 0.90070 0.92859 0.92936 0.92401 0.92692 0.90404 0.91109 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.20 71.98 0.66 -2.01 16 2 C -0.14 -3.12 5.43 29.85 0.16 -2.96 16 3 C 0.52 15.48 7.85 87.66 0.69 16.17 16 4 O -0.59 -21.11 16.31 -3.04 -0.05 -21.16 16 5 N -0.61 -17.88 3.33 -811.79 -2.70 -20.58 16 6 C 0.09 2.63 6.07 86.86 0.53 3.16 16 7 C 0.18 5.99 2.93 46.47 0.14 6.13 16 8 H 0.06 2.23 8.03 -2.39 -0.02 2.22 16 9 N -0.73 -30.76 4.97 -315.95 -1.57 -32.33 16 10 C -0.23 -12.04 10.47 84.03 0.88 -11.16 16 11 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 12 C -0.06 -3.15 5.50 84.86 0.47 -2.68 16 13 N -0.98 -60.23 13.97 21.65 0.30 -59.93 16 14 Si 0.94 42.76 27.73 68.60 1.90 44.66 16 15 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 16 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 17 H -0.25 -9.99 6.52 99.48 0.65 -9.34 16 18 C -0.08 -2.15 0.86 -50.91 -0.04 -2.20 16 19 C -0.14 -3.48 7.60 71.98 0.55 -2.93 16 20 C -0.13 -3.11 8.50 71.98 0.61 -2.50 16 21 C 0.12 3.24 6.04 86.73 0.52 3.77 16 22 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 23 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 25 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.10 2.14 7.85 -2.39 -0.02 2.12 16 27 H 0.08 2.31 7.48 -2.39 -0.02 2.29 16 28 H 0.07 2.16 7.73 -2.39 -0.02 2.14 16 29 H 0.37 14.93 3.25 -92.71 -0.30 14.63 16 30 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.47 6.66 -2.39 -0.02 1.46 16 33 H 0.05 1.40 7.46 -2.38 -0.02 1.38 16 34 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.83 7.84 -2.39 -0.02 1.81 16 38 H 0.07 1.82 7.82 -2.39 -0.02 1.80 16 Total: -1.00 -65.33 303.01 3.71 -61.62 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.67 Total: 24.93 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 5.16 Total: 2.78 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -3.97 Total: -112.83 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.05 Total: -21.16 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.90 Total: 44.66 kcal Total: -65.33 3.71 -61.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995291161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.725 kcal (2) G-P(sol) polarization free energy of solvation -65.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds