Wall clock time and date at job start Sun Mar 29 2020 22:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 O 1.21279 * 119.99507 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00020 * 180.02562 * 3 2 1 6 6 C 1.47419 * 125.65021 * 359.69615 * 5 3 2 7 7 C 1.55124 * 104.72460 * 155.81535 * 6 5 3 8 8 H 1.08996 * 111.22773 * 279.17882 * 7 6 5 9 9 N 1.46500 * 110.90709 * 155.27335 * 7 6 5 10 10 C 1.36933 * 120.00151 * 92.97656 * 9 7 6 11 11 H 1.08000 * 119.99903 * 0.02562 * 10 9 7 12 12 C 1.38817 * 120.00292 * 179.97438 * 10 9 7 13 13 N 1.31614 * 120.00142 * 180.02562 * 12 10 9 14 14 Si 1.86794 * 119.99774 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47517 * 90.00018 * 14 12 10 16 16 H 1.48501 * 109.47287 * 210.00036 * 14 12 10 17 17 H 1.48500 * 109.47563 * 329.99967 * 14 12 10 18 18 C 1.55156 * 101.48615 * 37.29751 * 7 6 5 19 19 C 1.53001 * 110.72335 * 205.96949 * 18 7 6 20 20 C 1.52996 * 110.72461 * 82.69439 * 18 7 6 21 21 C 1.47025 * 125.64574 * 180.02562 * 5 3 2 22 22 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 25 25 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 26 26 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 27 27 H 1.09006 * 110.36824 * 274.74806 * 6 5 3 28 28 H 1.08998 * 110.37021 * 37.06511 * 6 5 3 29 29 H 0.97007 * 120.00191 * 272.97582 * 9 7 6 30 30 H 0.97001 * 119.99935 * 180.02562 * 13 12 10 31 31 H 1.08998 * 109.47644 * 174.97060 * 19 18 7 32 32 H 1.08993 * 109.47087 * 294.97881 * 19 18 7 33 33 H 1.09003 * 109.46592 * 54.97365 * 19 18 7 34 34 H 1.09003 * 109.46934 * 305.02805 * 20 18 7 35 35 H 1.08997 * 109.47091 * 65.02619 * 20 18 7 36 36 H 1.09001 * 109.47200 * 185.02619 * 20 18 7 37 37 H 1.09000 * 109.88278 * 300.44110 * 21 5 3 38 38 H 1.09004 * 109.87918 * 61.45412 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4210 0.6464 0.0052 7 6 5.6535 1.3577 -0.6123 8 1 5.5960 1.3731 -1.7007 9 7 6.8987 0.7295 -0.1640 10 6 7.4746 -0.2610 -0.9138 11 1 7.0110 -0.5789 -1.8360 12 6 8.6548 -0.8559 -0.4893 13 7 9.2085 -1.8076 -1.2103 14 14 9.4570 -0.3056 1.1054 15 1 8.9325 -1.1208 2.2304 16 1 10.9278 -0.4854 1.0074 17 1 9.1485 1.1269 1.3462 18 6 5.5101 2.7876 -0.0275 19 6 6.1821 3.8156 -0.9400 20 6 6.0909 2.8551 1.3863 21 6 3.9815 2.9983 -0.0001 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 4.6356 0.3278 1.0254 28 1 4.1305 -0.2077 -0.6065 29 1 7.3154 1.0153 0.6642 30 1 10.0330 -2.2235 -0.9134 31 1 5.9932 4.8189 -0.5582 32 1 7.2563 3.6325 -0.9644 33 1 5.7756 3.7278 -1.9475 34 1 5.6204 2.0942 2.0090 35 1 7.1657 2.6784 1.3464 36 1 5.9002 3.8408 1.8107 37 1 3.6682 3.5549 -0.8833 38 1 3.6958 3.5413 0.9009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995291184.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:21 Heat of formation + Delta-G solvation = -50.123551 kcal Electronic energy + Delta-G solvation = -18080.641053 eV Core-core repulsion = 15343.246275 eV Total energy + Delta-G solvation = -2737.394778 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.38005 -39.44878 -35.98091 -34.70242 -33.56356 -33.01848 -29.49469 -28.34811 -27.91143 -25.61472 -24.57365 -22.78215 -20.51089 -20.00387 -19.42187 -18.04079 -17.38798 -16.58356 -16.48705 -15.96218 -15.32458 -15.15854 -14.75819 -14.59391 -14.38520 -13.93449 -13.62278 -13.43230 -13.16308 -13.10839 -12.99010 -12.78977 -12.65193 -12.59028 -12.15510 -12.05979 -11.94788 -11.88844 -11.65500 -11.36545 -10.99475 -10.85184 -9.70388 -9.30256 -8.00217 -5.34769 1.39720 1.42222 1.49450 1.60419 2.00409 2.49804 3.28585 3.30170 3.62864 3.77500 3.79018 3.98306 4.19767 4.20653 4.25773 4.34008 4.40564 4.59633 4.70844 4.76534 4.80992 4.85491 4.95950 4.98829 5.01293 5.05118 5.13272 5.14530 5.25704 5.33111 5.39256 5.45969 5.79794 6.23274 6.51672 7.08332 7.13421 7.82847 8.02644 9.20770 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026554 B = 0.007060 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.201206 B = 3965.131583 C = 4558.950926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.139 4.139 3 C 0.519 3.481 4 O -0.588 6.588 5 N -0.614 5.614 6 C 0.084 3.916 7 C 0.176 3.824 8 H 0.064 0.936 9 N -0.734 5.734 10 C -0.230 4.230 11 H 0.062 0.938 12 C -0.056 4.056 13 N -0.981 5.981 14 Si 0.943 3.057 15 H -0.278 1.278 16 H -0.300 1.300 17 H -0.248 1.248 18 C -0.082 4.082 19 C -0.128 4.128 20 C -0.137 4.137 21 C 0.121 3.879 22 H 0.085 0.915 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.371 0.629 30 H 0.257 0.743 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.284 7.916 5.191 14.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.178 4.178 3 C 0.310 3.690 4 O -0.469 6.469 5 N -0.347 5.347 6 C -0.041 4.041 7 C 0.066 3.934 8 H 0.082 0.918 9 N -0.377 5.377 10 C -0.361 4.361 11 H 0.080 0.920 12 C -0.248 4.248 13 N -0.631 5.631 14 Si 0.770 3.230 15 H -0.204 1.204 16 H -0.227 1.227 17 H -0.173 1.173 18 C -0.083 4.083 19 C -0.185 4.185 20 C -0.195 4.195 21 C -0.002 4.002 22 H 0.103 0.897 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.123 0.877 26 H 0.125 0.875 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.207 0.793 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.719 8.239 5.018 15.178 hybrid contribution 0.967 -0.186 0.631 1.169 sum -10.752 8.052 5.649 14.572 Atomic orbital electron populations 1.21511 0.92539 1.02699 1.02119 1.21690 0.98710 0.91694 1.05745 1.21092 0.80113 0.92894 0.74927 1.90641 1.55287 1.48166 1.52789 1.48578 1.05208 1.08810 1.72144 1.23189 0.87655 0.91621 1.01678 1.21500 0.84423 0.90500 0.96987 0.91820 1.42663 1.25410 1.43295 1.26379 1.19027 1.04053 1.09775 1.03200 0.92047 1.25396 0.98736 0.98831 1.01870 1.69866 1.21840 1.30021 1.41365 0.85610 0.77406 0.79449 0.80515 1.20417 1.22670 1.17278 1.21855 0.93320 0.95834 0.97287 1.21686 1.00294 0.98075 0.98470 1.21776 1.00530 1.02766 0.94382 1.22033 0.91386 0.84750 1.02018 0.89659 0.93053 0.93204 0.87722 0.87493 0.91072 0.90464 0.79289 0.93400 0.90538 0.92897 0.92480 0.92687 0.92915 0.90217 0.91487 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.20 71.98 0.66 -1.98 16 2 C -0.14 -3.06 5.42 29.85 0.16 -2.90 16 3 C 0.52 15.32 7.85 87.66 0.69 16.00 16 4 O -0.59 -21.04 16.31 -3.02 -0.05 -21.09 16 5 N -0.61 -17.67 3.32 -811.34 -2.70 -20.37 16 6 C 0.08 2.54 6.07 86.93 0.53 3.06 16 7 C 0.18 5.99 2.97 46.46 0.14 6.13 16 8 H 0.06 2.34 7.99 -2.39 -0.02 2.32 16 9 N -0.73 -30.62 4.95 -316.03 -1.56 -32.19 16 10 C -0.23 -12.05 10.44 84.04 0.88 -11.17 16 11 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 12 C -0.06 -3.14 5.50 84.86 0.47 -2.67 16 13 N -0.98 -60.23 13.97 21.65 0.30 -59.93 16 14 Si 0.94 42.70 27.74 68.60 1.90 44.60 16 15 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 16 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 17 H -0.25 -9.96 6.52 99.48 0.65 -9.32 16 18 C -0.08 -2.23 0.85 -50.99 -0.04 -2.27 16 19 C -0.13 -3.19 8.49 71.98 0.61 -2.57 16 20 C -0.14 -3.52 7.54 71.98 0.54 -2.98 16 21 C 0.12 3.26 6.04 86.73 0.52 3.78 16 22 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 24 H 0.05 1.10 8.10 -2.38 -0.02 1.08 16 25 H 0.10 2.09 7.85 -2.39 -0.02 2.07 16 26 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.07 2.14 7.70 -2.38 -0.02 2.12 16 28 H 0.08 2.29 7.48 -2.39 -0.02 2.27 16 29 H 0.37 14.89 3.31 -92.70 -0.31 14.59 16 30 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 34 H 0.05 1.43 7.42 -2.39 -0.02 1.41 16 35 H 0.05 1.49 6.75 -2.39 -0.02 1.48 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.80 7.82 -2.39 -0.02 1.78 16 38 H 0.07 1.83 7.85 -2.38 -0.02 1.81 16 Total: -1.00 -65.30 302.97 3.71 -61.58 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.66 Total: 24.96 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 5.16 Total: 2.43 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -3.96 Total: -112.48 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.05 Total: -21.09 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.90 Total: 44.60 kcal Total: -65.30 3.71 -61.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995291184.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.460 kcal (2) G-P(sol) polarization free energy of solvation -65.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds