Wall clock time and date at job start Sun Mar 29 2020 22:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.47013 * 2 1 4 4 O 1.21283 * 119.99975 * 359.97438 * 3 2 1 5 5 N 1.34773 * 119.99809 * 180.02562 * 3 2 1 6 6 C 1.46504 * 119.99936 * 0.02562 * 5 3 2 7 7 C 1.46499 * 119.99953 * 180.02562 * 5 3 2 8 8 C 1.53035 * 109.46011 * 119.99885 * 7 5 3 9 9 C 1.53197 * 109.31441 * 181.38844 * 8 7 5 10 10 N 1.46936 * 108.88860 * 305.29327 * 9 8 7 11 11 C 1.36935 * 120.62903 * 233.67990 * 10 9 8 12 12 H 1.08004 * 119.99817 * 27.39183 * 11 10 9 13 13 C 1.38804 * 120.00238 * 207.39383 * 11 10 9 14 14 N 1.31624 * 120.00025 * 17.25587 * 13 11 10 15 15 Si 1.86801 * 120.00311 * 197.25673 * 13 11 10 16 16 H 1.48505 * 109.47002 * 90.00337 * 15 13 11 17 17 H 1.48506 * 109.47209 * 209.99842 * 15 13 11 18 18 H 1.48497 * 109.47373 * 330.00036 * 15 13 11 19 19 C 1.47199 * 118.55490 * 53.53522 * 10 9 8 20 20 C 1.53048 * 109.45920 * 240.06779 * 7 5 3 21 21 H 1.09000 * 109.47025 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47065 * 299.99835 * 1 2 3 23 23 H 1.08999 * 109.47294 * 59.99863 * 1 2 3 24 24 H 1.09004 * 109.46655 * 240.00288 * 2 1 3 25 25 H 1.08999 * 109.47294 * 120.00136 * 2 1 3 26 26 H 1.09005 * 109.47000 * 269.99743 * 6 5 3 27 27 H 1.08994 * 109.47190 * 29.99851 * 6 5 3 28 28 H 1.09001 * 109.46833 * 150.00548 * 6 5 3 29 29 H 1.09002 * 109.44878 * 0.03212 * 7 5 3 30 30 H 1.08994 * 109.50151 * 61.43686 * 8 7 5 31 31 H 1.09002 * 109.52726 * 301.35132 * 8 7 5 32 32 H 1.08995 * 109.58688 * 65.14877 * 9 8 7 33 33 H 1.08992 * 109.59155 * 185.43629 * 9 8 7 34 34 H 0.96996 * 120.00327 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.53355 * 186.67382 * 19 10 9 36 36 H 1.09002 * 109.67913 * 66.37170 * 19 10 9 37 37 H 1.08997 * 109.49500 * 298.56089 * 20 7 5 38 38 H 1.08993 * 109.49476 * 58.62948 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.3094 0.5536 -0.0017 7 6 3.8457 3.0483 0.0000 8 6 4.6965 3.2878 1.2494 9 6 5.1766 4.7425 1.2643 10 7 5.8711 5.0271 0.0010 11 6 7.1402 5.5415 0.0031 12 1 7.8018 5.3432 0.8334 13 6 7.5762 6.3176 -1.0618 14 7 6.7026 6.8428 -1.8946 15 14 9.4029 6.6169 -1.3132 16 1 9.9639 5.5517 -2.1826 17 1 9.6036 7.9393 -1.9585 18 1 10.0932 6.5977 0.0014 19 6 5.1741 4.7444 -1.2643 20 6 4.6939 3.2897 -1.2508 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8900 26 1 4.5460 0.2768 1.0258 27 1 3.8688 -0.3006 -0.5157 28 1 5.2217 0.8561 -0.5157 29 1 2.9977 3.7331 0.0015 30 1 5.5581 2.6205 1.2362 31 1 4.0989 3.0929 2.1399 32 1 4.3205 5.4088 1.3687 33 1 5.8608 4.8930 2.0992 34 1 7.0072 7.3856 -2.6385 35 1 5.8585 4.8955 -2.0991 36 1 4.3179 5.4108 -1.3686 37 1 5.5556 2.6223 -1.2404 38 1 4.0942 3.0958 -2.1400 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005010578.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:38 Heat of formation + Delta-G solvation = -22.466814 kcal Electronic energy + Delta-G solvation = -18034.310741 eV Core-core repulsion = 15298.115248 eV Total energy + Delta-G solvation = -2736.195492 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.91230 -37.43862 -35.05259 -33.05992 -32.12605 -30.17489 -29.54801 -26.82141 -25.54853 -23.97925 -22.17172 -21.64590 -19.18068 -18.71772 -17.02443 -16.68304 -15.80979 -15.74622 -14.78526 -13.98298 -13.89320 -13.58170 -13.44434 -13.02634 -12.72514 -12.59811 -12.49171 -12.38814 -12.05011 -11.66910 -11.45907 -11.21838 -11.10771 -10.78757 -10.74213 -10.32941 -10.18912 -10.07075 -9.74610 -9.65912 -9.40307 -8.53106 -8.26131 -6.69312 -5.78723 -3.20906 2.81585 3.23046 3.37881 3.44496 3.45947 4.49405 4.61454 4.97746 5.00711 5.16070 5.31920 5.41568 5.42589 5.46798 5.54831 5.66744 5.69761 5.75979 5.87031 5.91027 6.09682 6.14530 6.24801 6.36580 6.50625 6.59302 6.64410 6.78317 6.93455 6.98632 7.34682 7.60116 7.68948 7.79344 8.39069 8.44313 9.20444 9.83993 10.41437 11.30165 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.050739 B = 0.005410 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.710638 B = 5174.336363 C = 5223.036345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.143 4.143 3 C 0.506 3.494 4 O -0.546 6.546 5 N -0.611 5.611 6 C 0.077 3.923 7 C 0.143 3.857 8 C -0.137 4.137 9 C 0.147 3.853 10 N -0.592 5.592 11 C -0.253 4.253 12 H 0.066 0.934 13 C 0.002 3.998 14 N -0.902 5.902 15 Si 0.903 3.097 16 H -0.288 1.288 17 H -0.291 1.291 18 H -0.279 1.279 19 C 0.173 3.827 20 C -0.145 4.145 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.020 0.980 33 H 0.056 0.944 34 H 0.254 0.746 35 H 0.091 0.909 36 H 0.021 0.979 37 H 0.057 0.943 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.310 -14.715 3.130 16.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.294 3.706 4 O -0.423 6.423 5 N -0.343 5.343 6 C -0.067 4.067 7 C 0.041 3.959 8 C -0.177 4.177 9 C 0.020 3.980 10 N -0.315 5.315 11 C -0.382 4.382 12 H 0.084 0.916 13 C -0.196 4.196 14 N -0.547 5.547 15 Si 0.733 3.267 16 H -0.215 1.215 17 H -0.218 1.218 18 H -0.204 1.204 19 C 0.046 3.954 20 C -0.185 4.185 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.673 -14.093 2.998 15.879 hybrid contribution 1.082 0.047 -0.209 1.103 sum -5.590 -14.046 2.789 15.373 Atomic orbital electron populations 1.21526 0.93334 1.01167 1.03361 1.21657 0.98337 0.94459 1.03820 1.20756 0.82110 0.91620 0.76092 1.90680 1.54922 1.46608 1.50139 1.48196 1.05540 1.07883 1.72698 1.21746 0.94228 0.89110 1.01579 1.21184 0.97419 0.81043 0.96228 1.22347 0.98700 1.00590 0.96038 1.20867 0.95400 0.91396 0.90333 1.44145 1.14525 1.73461 0.99399 1.19197 0.88096 1.24833 1.06105 0.91585 1.25039 0.97736 0.96945 0.99915 1.70034 1.32087 1.34791 1.17768 0.86285 0.85326 0.77166 0.77962 1.21479 1.21760 1.20440 1.20806 0.95870 0.88159 0.90540 1.22546 0.98317 1.02144 0.95474 0.92397 0.92070 0.92026 0.89216 0.89280 0.92842 0.91528 0.90460 0.88777 0.92160 0.93060 0.96235 0.92511 0.93591 0.89117 0.96124 0.92438 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.20 37.16 0.34 -1.05 16 2 C -0.14 -1.47 4.97 -27.88 -0.14 -1.61 16 3 C 0.51 7.73 7.67 -10.98 -0.08 7.64 16 4 O -0.55 -10.60 15.31 5.55 0.09 -10.51 16 5 N -0.61 -9.16 2.76 -173.88 -0.48 -9.64 16 6 C 0.08 0.85 9.33 59.85 0.56 1.41 16 7 C 0.14 2.61 2.48 -67.89 -0.17 2.44 16 8 C -0.14 -2.45 5.34 -26.61 -0.14 -2.59 16 9 C 0.15 3.15 6.51 -3.70 -0.02 3.12 16 10 N -0.59 -14.93 3.01 -172.10 -0.52 -15.44 16 11 C -0.25 -6.92 9.59 -15.06 -0.14 -7.07 16 12 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 13 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 14 N -0.90 -26.31 11.18 55.49 0.62 -25.69 16 15 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.17 4.18 5.33 -3.56 -0.02 4.16 16 20 C -0.14 -2.82 5.31 -26.61 -0.14 -2.96 16 21 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 23 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 24 H 0.09 0.76 7.40 -51.93 -0.38 0.37 16 25 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.56 6.44 -51.93 -0.33 0.22 16 28 H 0.08 0.92 6.46 -51.93 -0.34 0.58 16 29 H 0.09 1.97 6.90 -51.93 -0.36 1.61 16 30 H 0.06 1.05 7.72 -51.93 -0.40 0.65 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 34 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 1.09 6.73 -51.93 -0.35 0.74 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 298.79 15.07 4.50 4.50 Total: -1.00 -31.55 298.79 -7.10 -38.66 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.24 Total: -1.91 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -0.05 Total: 3.47 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.38 Total: -50.77 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.55 -7.10 -38.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005010578.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.190 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds