Wall clock time and date at job start Sun Mar 29 2020 22:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46834 * 2 1 4 4 C 1.53005 * 109.47255 * 240.00418 * 2 1 3 5 5 C 1.50697 * 109.47438 * 119.99744 * 2 1 3 6 6 O 1.21278 * 120.00006 * 0.02562 * 5 2 1 7 7 N 1.34777 * 120.00044 * 180.02562 * 5 2 1 8 8 C 1.46501 * 120.00202 * 180.02562 * 7 5 2 9 9 H 1.09007 * 112.84404 * 336.20076 * 8 7 5 10 10 C 1.54054 * 113.69581 * 107.46639 * 8 7 5 11 11 C 1.53775 * 86.98523 * 139.99351 * 10 8 7 12 12 H 1.08998 * 113.61683 * 219.98054 * 11 10 8 13 13 N 1.46505 * 113.61553 * 89.16124 * 11 10 8 14 14 C 1.36931 * 119.99788 * 105.86383 * 13 11 10 15 15 H 1.08002 * 120.00438 * 0.02562 * 14 13 11 16 16 C 1.38817 * 119.99680 * 179.72358 * 14 13 11 17 17 N 1.31614 * 119.99888 * 0.27479 * 16 14 13 18 18 Si 1.86803 * 119.99862 * 180.27671 * 16 14 13 19 19 H 1.48496 * 109.47141 * 59.99751 * 18 16 14 20 20 H 1.48490 * 109.47071 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46993 * 300.00028 * 18 16 14 22 22 C 1.53778 * 113.61538 * 205.00383 * 8 7 5 23 23 H 1.08998 * 109.47004 * 299.99826 * 1 2 3 24 24 H 1.08995 * 109.47035 * 59.99898 * 1 2 3 25 25 H 1.09002 * 109.46663 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47335 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.47516 * 299.99820 * 3 2 1 28 28 H 1.08998 * 109.47183 * 60.00284 * 3 2 1 29 29 H 1.09000 * 109.46602 * 299.99722 * 4 2 1 30 30 H 1.08996 * 109.46849 * 59.99742 * 4 2 1 31 31 H 1.09002 * 109.46995 * 179.97438 * 4 2 1 32 32 H 0.96997 * 120.00246 * 0.02562 * 7 5 2 33 33 H 1.08997 * 113.61101 * 25.48559 * 10 8 7 34 34 H 1.09002 * 113.69186 * 254.50766 * 10 8 7 35 35 H 0.97000 * 119.99792 * 285.86177 * 13 11 10 36 36 H 0.97005 * 119.99715 * 179.97438 * 17 16 14 37 37 H 1.08997 * 113.61545 * 105.38588 * 22 8 7 38 38 H 1.08996 * 113.61634 * 334.47786 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2304 6 8 1.2444 -1.1716 2.0286 7 7 3.3575 -0.8330 1.4439 8 6 3.8460 -1.5240 2.6398 9 1 3.1203 -1.5264 3.4533 10 6 4.4522 -2.9102 2.3496 11 6 5.5332 -2.5648 3.3874 12 1 6.5330 -2.8914 3.1017 13 7 5.1780 -2.9504 4.7554 14 6 5.7773 -4.0347 5.3385 15 1 6.5122 -4.6054 4.7902 16 6 5.4450 -4.3966 6.6368 17 7 4.5498 -3.7008 7.3053 18 14 6.2683 -5.8712 7.4352 19 1 7.7356 -5.6499 7.4889 20 1 5.7427 -6.0458 8.8129 21 1 5.9804 -7.0906 6.6379 22 6 5.2549 -1.0854 3.0725 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 -1.7488 -1.2493 30 1 1.6767 -0.2073 -2.1392 31 1 3.1301 -0.7208 -1.2495 32 1 3.9878 -0.4637 0.8058 33 1 4.8379 -3.0144 1.3355 34 1 3.8107 -3.7398 2.6470 35 1 4.5183 -2.4375 5.2480 36 1 4.3173 -3.9540 8.2124 37 1 5.2611 -0.4429 3.9529 38 1 5.8597 -0.6917 2.2556 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020961445.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:15 Heat of formation + Delta-G solvation = -45.818174 kcal Electronic energy + Delta-G solvation = -17462.735090 eV Core-core repulsion = 14725.527007 eV Total energy + Delta-G solvation = -2737.208083 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.37857 -39.64354 -36.56658 -35.73423 -34.11150 -31.63622 -28.18584 -28.08723 -26.54595 -26.41948 -25.03023 -23.14558 -20.78314 -19.86079 -19.33014 -17.69570 -17.45418 -16.67576 -16.18089 -15.82585 -15.62744 -15.07209 -14.75036 -14.61709 -14.29593 -13.60092 -13.37690 -13.29930 -13.24698 -13.02159 -12.90482 -12.76602 -12.61456 -12.58772 -12.22664 -11.89537 -11.87584 -11.79426 -11.70985 -11.33106 -10.90037 -10.58540 -9.95596 -9.04226 -7.96524 -5.26616 1.46532 1.50422 1.56458 1.66189 2.25771 2.54949 3.35411 3.62135 3.65632 3.81484 3.87391 3.88206 3.97931 4.26352 4.29143 4.36745 4.71762 4.75239 4.78968 4.81563 4.84152 4.95587 4.96359 4.99719 5.02968 5.15741 5.21051 5.25736 5.33448 5.36455 5.36946 5.50254 5.70013 6.25673 6.63766 7.30146 7.33847 8.06451 8.27881 9.27008 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.047823 B = 0.004566 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.348830 B = 6130.773570 C = 6303.373266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.082 4.082 3 C -0.137 4.137 4 C -0.136 4.136 5 C 0.508 3.492 6 O -0.598 6.598 7 N -0.699 5.699 8 C 0.129 3.871 9 H 0.065 0.935 10 C -0.170 4.170 11 C 0.150 3.850 12 H 0.079 0.921 13 N -0.724 5.724 14 C -0.247 4.247 15 H 0.083 0.917 16 C -0.078 4.078 17 N -0.973 5.973 18 Si 0.977 3.023 19 H -0.272 1.272 20 H -0.297 1.297 21 H -0.278 1.278 22 C -0.136 4.136 23 H 0.042 0.958 24 H 0.091 0.909 25 H 0.041 0.959 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.416 0.584 33 H 0.106 0.894 34 H 0.031 0.969 35 H 0.371 0.629 36 H 0.251 0.749 37 H 0.060 0.940 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.041 10.796 -20.736 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.085 4.085 3 C -0.194 4.194 4 C -0.194 4.194 5 C 0.296 3.704 6 O -0.478 6.478 7 N -0.350 5.350 8 C 0.023 3.977 9 H 0.083 0.917 10 C -0.212 4.212 11 C 0.040 3.960 12 H 0.097 0.903 13 N -0.362 5.362 14 C -0.378 4.378 15 H 0.100 0.900 16 C -0.270 4.270 17 N -0.623 5.623 18 Si 0.806 3.194 19 H -0.198 1.198 20 H -0.224 1.224 21 H -0.205 1.205 22 C -0.175 4.175 23 H 0.061 0.939 24 H 0.110 0.890 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.254 0.746 33 H 0.125 0.875 34 H 0.050 0.950 35 H 0.202 0.798 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.455 10.324 -20.126 22.666 hybrid contribution -0.102 -0.737 1.132 1.355 sum -1.556 9.586 -18.994 21.333 Atomic orbital electron populations 1.21682 0.92670 1.01785 1.02453 1.20887 0.97633 0.97559 0.92439 1.21882 1.02196 0.91936 1.03378 1.21880 1.02198 0.99795 0.95512 1.21536 0.82395 0.78616 0.87849 1.90697 1.56834 1.50966 1.49299 1.45886 1.06939 1.57525 1.24630 1.22219 0.94634 0.93176 0.87640 0.91702 1.24217 0.99811 0.95974 1.01228 1.21257 0.96425 0.94295 0.84070 0.90347 1.42395 1.48663 1.33312 1.11792 1.19697 1.17186 1.04658 0.96269 0.89960 1.25649 1.00665 1.02660 0.97982 1.69840 1.37313 1.43372 1.11819 0.85154 0.78208 0.79140 0.76914 1.19802 1.22388 1.20462 1.23711 0.94579 0.97204 1.02040 0.93860 0.88986 0.93932 0.90547 0.88847 0.93487 0.93551 0.88846 0.90541 0.74571 0.87546 0.94999 0.79775 0.94032 0.92130 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 7.76 71.98 0.56 -2.06 16 2 C -0.08 -1.55 0.87 -52.93 -0.05 -1.60 16 3 C -0.14 -1.81 8.37 71.98 0.60 -1.20 16 4 C -0.14 -1.82 8.37 71.98 0.60 -1.22 16 5 C 0.51 14.92 6.48 87.66 0.57 15.49 16 6 O -0.60 -24.83 15.58 -3.02 -0.05 -24.88 16 7 N -0.70 -17.70 5.15 -439.60 -2.26 -19.96 16 8 C 0.13 4.34 4.13 45.61 0.19 4.53 16 9 H 0.06 2.86 7.46 -2.38 -0.02 2.84 16 10 C -0.17 -5.98 7.70 31.21 0.24 -5.74 16 11 C 0.15 5.80 4.55 45.52 0.21 6.01 16 12 H 0.08 2.84 8.11 -2.39 -0.02 2.82 16 13 N -0.72 -37.57 5.31 -320.43 -1.70 -39.27 16 14 C -0.25 -13.93 9.97 84.04 0.84 -13.10 16 15 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 16 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 17 N -0.97 -61.74 13.06 21.65 0.28 -61.46 16 18 Si 0.98 46.92 29.55 68.60 2.03 48.95 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 C -0.14 -4.08 7.57 31.12 0.24 -3.84 16 23 H 0.04 1.03 8.10 -2.39 -0.02 1.01 16 24 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.04 1.02 8.10 -2.39 -0.02 1.00 16 26 H 0.08 0.77 7.56 -2.39 -0.02 0.75 16 27 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.78 7.57 -2.39 -0.02 0.76 16 32 H 0.42 6.86 7.56 -92.71 -0.70 6.16 16 33 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.37 21.13 7.90 -92.71 -0.73 20.40 16 36 H 0.25 15.47 8.31 -92.70 -0.77 14.70 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.13 2.60 8.12 -2.39 -0.02 2.58 16 Total: -1.00 -75.59 313.00 2.37 -73.22 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -0.39 Total: 30.24 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 4.46 Total: -6.83 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -3.68 Total: -120.70 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.05 Total: -24.88 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -75.59 2.37 -73.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020961445.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.400 kcal (2) G-P(sol) polarization free energy of solvation -75.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds