Wall clock time and date at job start Sun Mar 29 2020 22:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47284 * 2 1 4 4 O 1.21281 * 120.00103 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99912 * 180.02562 * 3 2 1 6 6 C 1.46926 * 120.63162 * 0.02562 * 5 3 2 7 7 C 1.53191 * 108.88932 * 233.68165 * 6 5 3 8 8 C 1.53040 * 109.31500 * 305.28791 * 7 6 5 9 9 C 1.53043 * 109.53461 * 61.36946 * 8 7 6 10 10 H 1.09004 * 109.49747 * 58.58437 * 9 8 7 11 11 N 1.46496 * 109.49677 * 178.68258 * 9 8 7 12 12 C 1.46503 * 120.00019 * 60.00518 * 11 9 8 13 13 C 1.36942 * 120.00186 * 239.99845 * 11 9 8 14 14 H 1.08006 * 119.99588 * 23.01022 * 13 11 9 15 15 C 1.38813 * 120.00359 * 203.01231 * 13 11 9 16 16 N 1.31617 * 119.99573 * 11.63742 * 15 13 11 17 17 Si 1.86793 * 120.00196 * 191.64069 * 15 13 11 18 18 H 1.48497 * 109.47334 * 89.99379 * 17 15 13 19 19 H 1.48495 * 109.47140 * 209.99831 * 17 15 13 20 20 H 1.48506 * 109.46844 * 329.99911 * 17 15 13 21 21 C 1.47212 * 120.81385 * 180.14725 * 5 3 2 22 22 H 1.09002 * 109.47194 * 59.99317 * 1 2 3 23 23 H 1.09002 * 109.47388 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46648 * 299.99891 * 1 2 3 25 25 H 1.09002 * 109.46648 * 240.00108 * 2 1 3 26 26 H 1.09002 * 109.47194 * 120.00683 * 2 1 3 27 27 H 1.08998 * 109.58542 * 113.81838 * 6 5 3 28 28 H 1.08999 * 109.58266 * 353.53748 * 6 5 3 29 29 H 1.09002 * 109.50188 * 65.24874 * 7 6 5 30 30 H 1.09000 * 109.49387 * 185.30862 * 7 6 5 31 31 H 1.08997 * 109.46156 * 181.38709 * 8 7 6 32 32 H 1.08998 * 109.46177 * 301.35149 * 8 7 6 33 33 H 1.08997 * 109.47153 * 93.84996 * 12 11 9 34 34 H 1.09003 * 109.46871 * 213.84990 * 12 11 9 35 35 H 1.08996 * 109.47056 * 333.84852 * 12 11 9 36 36 H 0.97001 * 120.00010 * 180.02562 * 16 15 13 37 37 H 1.09008 * 109.53082 * 6.53264 * 21 5 3 38 38 H 1.08993 * 109.55744 * 246.15839 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 -0.0005 6 6 4.3245 0.5608 -0.0017 7 6 5.2978 0.7517 1.1658 8 6 5.9352 2.1398 1.0716 9 6 4.8464 3.2107 1.1706 10 1 4.3103 3.0985 2.1130 11 7 5.4606 4.5394 1.1119 12 6 6.2396 4.9350 -0.0641 13 6 5.3066 5.4117 2.1562 14 1 5.0759 5.0375 3.1428 15 6 5.4469 6.7768 1.9469 16 7 5.4990 7.2525 0.7209 17 14 5.5619 7.9384 3.4052 18 1 6.9851 8.1035 3.7956 19 1 4.9944 9.2589 3.0321 20 1 4.7974 7.3759 4.5475 21 6 3.8679 3.0478 0.0027 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 4.8767 0.5592 -0.9414 28 1 3.7967 -0.3859 0.1136 29 1 4.7575 0.6625 2.1083 30 1 6.0758 -0.0103 1.1191 31 1 6.6466 2.2688 1.8873 32 1 6.4546 2.2370 0.1182 33 1 5.5959 5.4679 -0.7639 34 1 7.0581 5.5855 0.2443 35 1 6.6445 4.0460 -0.5476 36 1 5.5974 8.2064 0.5745 37 1 3.0370 3.7432 0.1222 38 1 4.3830 3.2486 -0.9366 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027257563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:50 Heat of formation + Delta-G solvation = -20.571411 kcal Electronic energy + Delta-G solvation = -18119.176100 eV Core-core repulsion = 15383.062799 eV Total energy + Delta-G solvation = -2736.113301 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.86424 -37.44066 -35.04371 -32.85905 -32.12450 -31.20063 -28.77627 -25.99757 -25.62326 -23.99202 -22.88020 -21.62298 -19.37808 -18.45141 -17.04207 -16.68525 -15.56610 -15.41286 -14.91892 -14.13861 -14.00898 -13.76822 -13.45169 -13.24365 -12.62647 -12.47448 -12.38482 -12.08996 -11.91518 -11.65055 -11.16568 -11.11152 -10.97658 -10.78744 -10.60188 -10.38084 -10.31474 -10.14862 -9.84318 -9.72584 -9.42554 -8.55822 -8.25778 -6.73212 -5.70303 -3.17006 2.92216 3.29648 3.41296 3.46946 3.48643 4.51019 4.67078 4.92340 5.07721 5.07949 5.17675 5.31501 5.42762 5.47328 5.57079 5.65090 5.73696 5.80098 5.92341 5.94985 6.04012 6.15621 6.21902 6.25866 6.40737 6.53204 6.72189 6.81114 6.96287 7.02235 7.40199 7.74184 7.76017 7.83409 8.41572 8.50953 9.25779 9.88127 10.36912 11.34594 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030280 B = 0.006430 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.483730 B = 4353.281685 C = 4776.458768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.143 4.143 3 C 0.506 3.494 4 O -0.543 6.543 5 N -0.610 5.610 6 C 0.108 3.892 7 C -0.131 4.131 8 C -0.133 4.133 9 C 0.169 3.831 10 H 0.064 0.936 11 N -0.592 5.592 12 C 0.162 3.838 13 C -0.256 4.256 14 H 0.068 0.932 15 C 0.003 3.997 16 N -0.907 5.907 17 Si 0.906 3.094 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.098 3.902 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.028 0.972 34 H 0.044 0.956 35 H -0.001 1.001 36 H 0.253 0.747 37 H 0.090 0.910 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 -16.521 -2.111 16.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.294 3.706 4 O -0.421 6.421 5 N -0.344 5.344 6 C -0.015 4.015 7 C -0.170 4.170 8 C -0.173 4.173 9 C 0.059 3.941 10 H 0.082 0.918 11 N -0.314 5.314 12 C 0.018 3.982 13 C -0.385 4.385 14 H 0.086 0.914 15 C -0.195 4.195 16 N -0.552 5.552 17 Si 0.737 3.263 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.205 1.205 21 C -0.025 4.025 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.017 0.983 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.393 -15.799 -2.171 16.126 hybrid contribution 0.230 0.709 0.649 0.989 sum -2.163 -15.090 -1.522 15.320 Atomic orbital electron populations 1.21527 0.93350 1.01100 1.03410 1.21648 0.98335 0.94561 1.03730 1.20722 0.82022 0.91553 0.76306 1.90699 1.54808 1.46596 1.49978 1.48415 1.05197 1.08112 1.72693 1.21712 0.91288 0.89438 0.99105 1.21905 0.98355 0.98488 0.98260 1.22085 0.99542 0.93625 1.02054 1.20630 0.91116 0.86163 0.96144 0.91820 1.43936 1.56961 1.11307 1.19170 1.20787 0.94838 0.94001 0.88624 1.19236 1.44206 0.86959 0.88111 0.91401 1.25048 1.01195 0.96976 0.96312 1.70065 1.54328 1.12398 1.18392 0.86221 0.77682 0.80483 0.81959 1.21507 1.21710 1.20489 1.22568 0.99099 0.80723 1.00154 0.92083 0.92436 0.91987 0.89359 0.89219 0.91641 0.90341 0.91782 0.91298 0.91741 0.92271 0.95381 0.93703 0.98302 0.93718 0.89185 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.20 37.16 0.34 -1.14 16 2 C -0.14 -1.56 4.77 -27.88 -0.13 -1.70 16 3 C 0.51 8.28 7.70 -10.99 -0.08 8.20 16 4 O -0.54 -11.40 15.42 5.56 0.09 -11.31 16 5 N -0.61 -9.76 2.98 -172.52 -0.51 -10.28 16 6 C 0.11 1.26 6.33 -3.71 -0.02 1.24 16 7 C -0.13 -1.62 6.08 -26.61 -0.16 -1.79 16 8 C -0.13 -2.21 5.13 -26.69 -0.14 -2.34 16 9 C 0.17 3.50 2.74 -67.79 -0.19 3.31 16 10 H 0.06 1.40 7.87 -51.93 -0.41 1.00 16 11 N -0.59 -14.91 2.82 -173.32 -0.49 -15.39 16 12 C 0.16 3.98 7.91 59.85 0.47 4.46 16 13 C -0.26 -7.13 9.59 -15.06 -0.14 -7.28 16 14 H 0.07 1.87 7.82 -52.48 -0.41 1.45 16 15 C 0.00 0.09 5.12 -17.43 -0.09 0.00 16 16 N -0.91 -26.84 10.64 55.49 0.59 -26.25 16 17 Si 0.91 22.27 29.57 -169.99 -5.03 17.24 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.10 1.96 5.80 -3.54 -0.02 1.94 16 22 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 25 H 0.09 0.77 7.94 -51.93 -0.41 0.36 16 26 H 0.09 0.81 7.70 -51.93 -0.40 0.41 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.98 6.71 -51.93 -0.35 0.63 16 33 H 0.03 0.75 7.42 -51.93 -0.39 0.37 16 34 H 0.04 1.19 7.22 -51.93 -0.37 0.81 16 35 H 0.00 -0.03 6.46 -51.93 -0.34 -0.37 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.09 2.14 7.02 -51.92 -0.36 1.77 16 38 H 0.06 1.20 7.51 -51.93 -0.39 0.81 16 LS Contribution 297.94 15.07 4.49 4.49 Total: -1.00 -32.25 297.94 -7.26 -39.50 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -6.23 Total: -2.89 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -0.16 Total: 4.90 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.41 Total: -51.92 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.25 -7.26 -39.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027257563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.929 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds