Wall clock time and date at job start Sun Mar 29 2020 22:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47284 * 2 1 4 4 O 1.21281 * 120.00103 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99912 * 180.02562 * 3 2 1 6 6 C 1.46926 * 120.63162 * 0.02562 * 5 3 2 7 7 C 1.53191 * 108.88932 * 233.68165 * 6 5 3 8 8 C 1.53040 * 109.31500 * 305.28791 * 7 6 5 9 9 C 1.53043 * 109.53461 * 61.36946 * 8 7 6 10 10 H 1.09004 * 109.49747 * 58.58437 * 9 8 7 11 11 N 1.46496 * 109.49677 * 178.68258 * 9 8 7 12 12 C 1.46503 * 120.00019 * 60.00518 * 11 9 8 13 13 C 1.36942 * 120.00186 * 239.99845 * 11 9 8 14 14 H 1.08006 * 119.99588 * 23.01022 * 13 11 9 15 15 C 1.38813 * 120.00359 * 203.01231 * 13 11 9 16 16 N 1.31617 * 119.99573 * 11.63742 * 15 13 11 17 17 Si 1.86793 * 120.00196 * 191.64069 * 15 13 11 18 18 H 1.48497 * 109.47334 * 89.99379 * 17 15 13 19 19 H 1.48495 * 109.47140 * 209.99831 * 17 15 13 20 20 H 1.48506 * 109.46844 * 329.99911 * 17 15 13 21 21 C 1.47212 * 120.81385 * 180.14725 * 5 3 2 22 22 H 1.09002 * 109.47194 * 59.99317 * 1 2 3 23 23 H 1.09002 * 109.47388 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46648 * 299.99891 * 1 2 3 25 25 H 1.09002 * 109.46648 * 240.00108 * 2 1 3 26 26 H 1.09002 * 109.47194 * 120.00683 * 2 1 3 27 27 H 1.08998 * 109.58542 * 113.81838 * 6 5 3 28 28 H 1.08999 * 109.58266 * 353.53748 * 6 5 3 29 29 H 1.09002 * 109.50188 * 65.24874 * 7 6 5 30 30 H 1.09000 * 109.49387 * 185.30862 * 7 6 5 31 31 H 1.08997 * 109.46156 * 181.38709 * 8 7 6 32 32 H 1.08998 * 109.46177 * 301.35149 * 8 7 6 33 33 H 1.08997 * 109.47153 * 93.84996 * 12 11 9 34 34 H 1.09003 * 109.46871 * 213.84990 * 12 11 9 35 35 H 1.08996 * 109.47056 * 333.84852 * 12 11 9 36 36 H 0.97001 * 120.00010 * 180.02562 * 16 15 13 37 37 H 1.09008 * 109.53082 * 6.53264 * 21 5 3 38 38 H 1.08993 * 109.55744 * 246.15839 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 -0.0005 6 6 4.3245 0.5608 -0.0017 7 6 5.2978 0.7517 1.1658 8 6 5.9352 2.1398 1.0716 9 6 4.8464 3.2107 1.1706 10 1 4.3103 3.0985 2.1130 11 7 5.4606 4.5394 1.1119 12 6 6.2396 4.9350 -0.0641 13 6 5.3066 5.4117 2.1562 14 1 5.0759 5.0375 3.1428 15 6 5.4469 6.7768 1.9469 16 7 5.4990 7.2525 0.7209 17 14 5.5619 7.9384 3.4052 18 1 6.9851 8.1035 3.7956 19 1 4.9944 9.2589 3.0321 20 1 4.7974 7.3759 4.5475 21 6 3.8679 3.0478 0.0027 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 4.8767 0.5592 -0.9414 28 1 3.7967 -0.3859 0.1136 29 1 4.7575 0.6625 2.1083 30 1 6.0758 -0.0103 1.1191 31 1 6.6466 2.2688 1.8873 32 1 6.4546 2.2370 0.1182 33 1 5.5959 5.4679 -0.7639 34 1 7.0581 5.5855 0.2443 35 1 6.6445 4.0460 -0.5476 36 1 5.5974 8.2064 0.5745 37 1 3.0370 3.7432 0.1222 38 1 4.3830 3.2486 -0.9366 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027257563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:49 Heat of formation + Delta-G solvation = -41.891991 kcal Electronic energy + Delta-G solvation = -18120.100630 eV Core-core repulsion = 15383.062799 eV Total energy + Delta-G solvation = -2737.037831 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.17841 -38.94580 -36.76046 -34.19067 -33.42680 -32.79323 -30.44620 -28.07936 -26.85681 -25.49339 -24.22367 -23.03198 -20.90670 -19.74565 -18.79924 -18.20175 -17.03990 -16.72650 -16.59568 -15.71438 -15.41674 -15.22870 -14.78149 -14.60703 -14.40583 -13.86185 -13.69472 -13.56371 -13.17449 -12.87168 -12.80660 -12.63673 -12.46304 -12.22215 -12.12432 -12.07264 -11.99601 -11.74140 -11.62072 -11.39100 -10.75471 -10.66819 -9.66134 -8.78142 -7.86396 -5.35676 1.43091 1.44402 1.53463 1.68182 2.05751 2.48810 3.27223 3.59919 3.64272 3.99123 4.09047 4.13856 4.23427 4.28953 4.30267 4.37995 4.59273 4.67359 4.79123 4.80239 4.91474 4.95764 4.99504 5.07359 5.08541 5.17680 5.24840 5.36502 5.42504 5.52800 5.56597 5.61548 5.69050 6.29929 6.53729 7.11771 7.25073 7.83608 8.26299 9.16539 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030280 B = 0.006430 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.483730 B = 4353.281685 C = 4776.458768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.493 3.507 4 O -0.604 6.604 5 N -0.610 5.610 6 C 0.102 3.898 7 C -0.123 4.123 8 C -0.124 4.124 9 C 0.167 3.833 10 H 0.042 0.958 11 N -0.610 5.610 12 C 0.181 3.819 13 C -0.267 4.267 14 H 0.066 0.934 15 C -0.053 4.053 16 N -0.939 5.939 17 Si 0.971 3.029 18 H -0.280 1.280 19 H -0.295 1.295 20 H -0.271 1.271 21 C 0.113 3.887 22 H 0.041 0.959 23 H 0.094 0.906 24 H 0.039 0.961 25 H 0.124 0.876 26 H 0.122 0.878 27 H 0.082 0.918 28 H 0.124 0.876 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.055 0.945 32 H 0.063 0.937 33 H -0.004 1.004 34 H 0.018 0.982 35 H 0.036 0.964 36 H 0.249 0.751 37 H 0.038 0.962 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.323 -20.151 -1.782 20.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.284 3.716 4 O -0.486 6.486 5 N -0.343 5.343 6 C -0.019 4.019 7 C -0.161 4.161 8 C -0.163 4.163 9 C 0.059 3.941 10 H 0.060 0.940 11 N -0.332 5.332 12 C 0.036 3.964 13 C -0.397 4.397 14 H 0.084 0.916 15 C -0.248 4.248 16 N -0.585 5.585 17 Si 0.799 3.201 18 H -0.207 1.207 19 H -0.221 1.221 20 H -0.196 1.196 21 C -0.012 4.012 22 H 0.060 0.940 23 H 0.112 0.888 24 H 0.058 0.942 25 H 0.142 0.858 26 H 0.140 0.860 27 H 0.100 0.900 28 H 0.142 0.858 29 H 0.081 0.919 30 H 0.128 0.872 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.015 0.985 34 H 0.037 0.963 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.695 -19.511 -1.834 19.670 hybrid contribution -0.017 1.774 0.538 1.854 sum -1.712 -17.737 -1.296 17.866 Atomic orbital electron populations 1.21554 0.93690 1.02772 1.01464 1.21738 0.97944 0.90450 1.06820 1.21916 0.81450 0.93546 0.74666 1.90678 1.56323 1.49007 1.52574 1.48509 1.06281 1.07302 1.72219 1.22128 0.90787 0.89378 0.99616 1.21898 0.99348 0.96316 0.98581 1.21931 0.97774 0.94692 1.01887 1.20793 0.92492 0.85517 0.95282 0.93955 1.44172 1.57772 1.12626 1.18675 1.20481 0.93277 0.94692 0.87971 1.19551 1.43377 0.87816 0.88965 0.91579 1.25837 1.01571 0.98524 0.98847 1.70239 1.55770 1.12265 1.20259 0.85205 0.77867 0.77979 0.79031 1.20660 1.22147 1.19626 1.21980 0.96922 0.82890 0.99441 0.93958 0.88759 0.94216 0.85751 0.86024 0.90008 0.85783 0.91879 0.87230 0.92589 0.91880 0.98531 0.96318 0.94590 0.94218 0.94360 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.20 71.98 0.66 -2.02 16 2 C -0.13 -2.33 4.77 29.85 0.14 -2.19 16 3 C 0.49 15.62 7.70 87.66 0.68 16.30 16 4 O -0.60 -26.36 15.42 -3.03 -0.05 -26.41 16 5 N -0.61 -18.57 2.98 -818.12 -2.44 -21.01 16 6 C 0.10 1.90 6.33 86.36 0.55 2.44 16 7 C -0.12 -2.49 6.08 30.67 0.19 -2.31 16 8 C -0.12 -3.83 5.13 30.62 0.16 -3.67 16 9 C 0.17 7.01 2.74 45.08 0.12 7.13 16 10 H 0.04 1.92 7.87 -2.38 -0.02 1.90 16 11 N -0.61 -31.64 2.82 -702.27 -1.98 -33.61 16 12 C 0.18 9.13 7.91 127.77 1.01 10.14 16 13 C -0.27 -15.35 9.59 84.03 0.81 -14.55 16 14 H 0.07 3.73 7.82 -2.91 -0.02 3.71 16 15 C -0.05 -3.08 5.12 84.86 0.43 -2.64 16 16 N -0.94 -57.76 10.64 21.65 0.23 -57.53 16 17 Si 0.97 46.87 29.57 68.60 2.03 48.90 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 20 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 21 C 0.11 4.64 5.80 86.32 0.50 5.14 16 22 H 0.04 0.97 8.10 -2.39 -0.02 0.95 16 23 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.04 0.94 8.10 -2.39 -0.02 0.92 16 25 H 0.12 1.42 7.94 -2.39 -0.02 1.40 16 26 H 0.12 1.49 7.70 -2.39 -0.02 1.47 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.12 1.28 5.93 -2.39 -0.01 1.26 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 1.91 6.71 -2.39 -0.02 1.89 16 33 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 34 H 0.02 1.00 7.22 -2.39 -0.02 0.99 16 35 H 0.04 1.51 6.46 -2.39 -0.02 1.50 16 36 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 37 H 0.04 1.94 7.02 -2.38 -0.02 1.93 16 38 H 0.06 2.29 7.51 -2.39 -0.02 2.27 16 Total: -1.00 -76.73 297.94 4.06 -72.67 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: 1.02 Total: 3.21 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 5.25 Total: 13.79 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -4.19 Total: -112.15 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.41 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -76.73 4.06 -72.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027257563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.782 kcal (2) G-P(sol) polarization free energy of solvation -76.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds