Wall clock time and date at job start Sun Mar 29 2020 22:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47174 * 2 1 4 4 O 1.21275 * 120.00408 * 359.97438 * 3 2 1 5 5 N 1.34779 * 119.99838 * 180.02562 * 3 2 1 6 6 C 1.46502 * 119.99804 * 180.02562 * 5 3 2 7 7 H 1.08996 * 109.36849 * 35.25113 * 6 5 3 8 8 C 1.50883 * 109.36326 * 154.99783 * 6 5 3 9 9 C 1.52567 * 109.35575 * 211.94405 * 8 6 5 10 10 C 1.47087 * 114.33093 * 274.99165 * 9 8 6 11 11 C 1.54871 * 110.32487 * 62.79788 * 10 9 8 12 12 N 1.44571 * 109.59928 * 288.73845 * 11 10 9 13 13 C 1.36940 * 118.64251 * 270.70417 * 12 11 10 14 14 H 1.08000 * 120.00444 * 145.31959 * 13 12 11 15 15 C 1.38816 * 119.99857 * 325.31545 * 13 12 11 16 16 N 1.31619 * 119.99734 * 330.03410 * 15 13 12 17 17 Si 1.86795 * 119.99913 * 150.03079 * 15 13 12 18 18 H 1.48494 * 109.47128 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.47157 * 300.00280 * 17 15 13 20 20 H 1.48499 * 109.47069 * 60.00357 * 17 15 13 21 21 C 1.47601 * 122.71689 * 90.98352 * 12 11 10 22 22 H 1.09007 * 109.47099 * 300.00228 * 1 2 3 23 23 H 1.09004 * 109.46997 * 59.99961 * 1 2 3 24 24 H 1.09002 * 109.47529 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46909 * 239.99499 * 2 1 3 26 26 H 1.09004 * 109.46997 * 120.00039 * 2 1 3 27 27 H 0.97001 * 120.00060 * 359.97438 * 5 3 2 28 28 H 1.09003 * 109.49115 * 91.98799 * 8 6 5 29 29 H 1.08999 * 109.51177 * 331.92273 * 8 6 5 30 30 H 1.08997 * 108.51444 * 153.73241 * 9 8 6 31 31 H 1.09001 * 108.39135 * 36.15657 * 9 8 6 32 32 H 1.08999 * 109.32984 * 302.53862 * 10 9 8 33 33 H 1.08999 * 109.18995 * 182.97443 * 10 9 8 34 34 H 1.09002 * 109.44705 * 168.69405 * 11 10 9 35 35 H 1.08996 * 109.44605 * 48.77483 * 11 10 9 36 36 H 0.97000 * 120.00320 * 355.10695 * 16 15 13 37 37 H 1.09000 * 108.95100 * 78.29056 * 21 12 11 38 38 H 1.09000 * 108.95211 * 196.92687 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3574 1.6670 -0.0005 6 6 3.8458 3.0483 0.0000 7 1 3.1749 3.6686 0.5942 8 6 5.2291 3.0895 0.6010 9 6 5.4276 4.4191 1.3224 10 6 5.8714 5.5197 0.4534 11 6 4.7980 5.8231 -0.6211 12 7 4.7636 4.7496 -1.5888 13 6 5.5831 4.8260 -2.6833 14 1 6.0166 3.9276 -3.0972 15 6 5.8567 6.0583 -3.2608 16 7 4.9651 7.0248 -3.2025 17 14 7.4900 6.3448 -4.1207 18 1 7.5344 7.7317 -4.6496 19 1 8.5997 6.1475 -3.1538 20 1 7.6342 5.3829 -5.2427 21 6 3.8774 3.5776 -1.4490 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.9877 0.9297 -0.0005 28 1 5.9724 2.9906 -0.1901 29 1 5.3422 2.2702 1.3109 30 1 6.1689 4.2788 2.1090 31 1 4.4828 4.7034 1.7857 32 1 6.8034 5.2389 -0.0371 33 1 6.0369 6.4104 1.0595 34 1 5.0428 6.7582 -1.1247 35 1 3.8222 5.9129 -0.1439 36 1 4.0903 6.8553 -2.8193 37 1 2.8679 3.8593 -1.7486 38 1 4.2321 2.7850 -2.1079 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034056588.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:24 Heat of formation + Delta-G solvation = -32.591645 kcal Electronic energy + Delta-G solvation = -18163.429866 eV Core-core repulsion = 15426.795328 eV Total energy + Delta-G solvation = -2736.634538 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.73153 -37.80883 -34.73511 -33.43720 -32.77834 -30.90393 -29.81732 -26.00332 -24.71630 -24.18262 -22.54998 -20.42219 -19.74899 -19.20178 -17.19704 -16.93660 -15.91991 -15.53350 -14.77409 -14.48087 -13.84842 -13.68712 -13.45497 -13.25254 -12.95645 -12.48887 -12.32117 -12.22686 -11.78018 -11.71560 -11.22635 -11.10994 -10.73756 -10.62444 -10.39862 -10.14998 -10.01521 -9.97117 -9.80152 -9.61265 -9.29216 -8.81790 -8.24406 -6.74479 -6.01758 -3.29221 2.85078 3.39815 3.50401 3.53799 3.71810 4.60972 4.80069 5.02154 5.04380 5.15797 5.31353 5.37477 5.49081 5.56139 5.61931 5.70462 5.86801 5.87438 5.92414 6.08604 6.16808 6.32628 6.40607 6.48780 6.60631 6.71774 6.73385 6.81818 6.87591 6.97290 7.19212 7.41758 7.75060 8.12154 8.46671 8.62971 9.21405 9.88815 10.29503 11.16986 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031538 B = 0.006457 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.606688 B = 4335.424608 C = 4706.283461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.144 4.144 3 C 0.506 3.494 4 O -0.541 6.541 5 N -0.724 5.724 6 C 0.130 3.870 7 H 0.078 0.922 8 C -0.113 4.113 9 C -0.098 4.098 10 C -0.142 4.142 11 C 0.142 3.858 12 N -0.587 5.587 13 C -0.358 4.358 14 H 0.049 0.951 15 C -0.019 4.019 16 N -0.899 5.899 17 Si 1.060 2.940 18 H -0.286 1.286 19 H -0.293 1.293 20 H -0.293 1.293 21 C 0.143 3.857 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.396 0.604 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.023 0.977 36 H 0.270 0.730 37 H 0.017 0.983 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.674 -12.577 8.485 15.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.292 3.708 4 O -0.418 6.418 5 N -0.375 5.375 6 C 0.025 3.975 7 H 0.096 0.904 8 C -0.151 4.151 9 C -0.136 4.136 10 C -0.182 4.182 11 C 0.015 3.985 12 N -0.309 5.309 13 C -0.487 4.487 14 H 0.067 0.933 15 C -0.222 4.222 16 N -0.538 5.538 17 Si 0.889 3.111 18 H -0.211 1.211 19 H -0.220 1.220 20 H -0.220 1.220 21 C 0.016 3.984 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.230 0.770 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.348 -10.759 7.700 13.299 hybrid contribution -0.551 -1.657 0.767 1.907 sum -1.898 -12.416 8.468 15.148 Atomic orbital electron populations 1.21515 0.93240 1.01208 1.03421 1.21630 0.98567 0.94250 1.03992 1.20751 0.82474 0.91628 0.75964 1.90707 1.55266 1.46546 1.49232 1.46257 1.06881 1.09168 1.75242 1.21512 0.95145 0.81394 0.99450 0.90411 1.21246 0.96781 0.97284 0.99792 1.20262 1.00313 0.95167 0.97908 1.21372 1.02073 0.96535 0.98257 1.20933 0.94043 0.94232 0.89274 1.43570 1.44864 1.20120 1.22367 1.19854 1.24625 0.95608 1.08606 0.93335 1.25834 1.03940 0.94281 0.98171 1.70765 1.05342 1.36717 1.40973 0.83606 0.75770 0.75861 0.75832 1.21147 1.21993 1.22020 1.21584 0.93783 0.90858 0.92144 0.92100 0.91921 0.92365 0.89098 0.89298 0.77042 0.90174 0.92931 0.93658 0.93434 0.91757 0.93515 0.90315 0.95817 0.91948 0.96479 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.20 37.16 0.34 -1.09 16 2 C -0.14 -1.47 6.42 -27.89 -0.18 -1.65 16 3 C 0.51 7.66 7.79 -10.99 -0.09 7.57 16 4 O -0.54 -10.71 15.65 5.56 0.09 -10.63 16 5 N -0.72 -10.43 4.98 -54.18 -0.27 -10.70 16 6 C 0.13 2.34 2.27 -68.31 -0.16 2.18 16 7 H 0.08 1.56 6.75 -51.93 -0.35 1.21 16 8 C -0.11 -1.85 5.06 -28.02 -0.14 -2.00 16 9 C -0.10 -1.67 5.16 -29.79 -0.15 -1.82 16 10 C -0.14 -2.83 5.74 -28.58 -0.16 -3.00 16 11 C 0.14 3.37 4.89 -4.09 -0.02 3.35 16 12 N -0.59 -14.67 2.01 -171.87 -0.35 -15.01 16 13 C -0.36 -9.89 9.17 -15.06 -0.14 -10.03 16 14 H 0.05 1.36 7.97 -52.49 -0.42 0.94 16 15 C -0.02 -0.53 4.68 -17.43 -0.08 -0.61 16 16 N -0.90 -26.98 12.18 55.49 0.68 -26.31 16 17 Si 1.06 25.10 30.01 -169.99 -5.10 20.00 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.14 3.18 5.86 -2.76 -0.02 3.17 16 22 H 0.06 0.69 8.10 -51.92 -0.42 0.27 16 23 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.40 4.37 8.54 -40.82 -0.35 4.02 16 28 H 0.08 1.48 7.49 -51.93 -0.39 1.09 16 29 H 0.05 0.71 7.94 -51.93 -0.41 0.30 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.80 7.35 -51.93 -0.38 0.42 16 32 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 2.11 5.28 -51.93 -0.27 1.84 16 35 H 0.02 0.55 8.06 -51.93 -0.42 0.13 16 36 H 0.27 8.29 7.39 -40.82 -0.30 7.99 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.05 1.10 7.86 -51.93 -0.41 0.69 16 LS Contribution 300.20 15.07 4.52 4.52 Total: -1.00 -32.01 300.20 -7.52 -39.54 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.30 Total: 2.50 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -0.79 Total: -3.91 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 0.06 Total: -52.03 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.10 Total: 20.00 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.01 -7.52 -39.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034056588.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.945 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds