Wall clock time and date at job start Sun Mar 29 2020 22:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47507 * 2 1 4 4 O 1.21277 * 119.99793 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00339 * 179.97438 * 3 2 1 6 6 C 1.46492 * 120.00487 * 179.97438 * 5 3 2 7 7 H 1.09007 * 109.24713 * 324.65532 * 6 5 3 8 8 C 1.54841 * 109.36176 * 205.00327 * 6 5 3 9 9 C 1.50130 * 110.81339 * 200.92784 * 8 6 5 10 10 C 1.52531 * 105.41915 * 97.68066 * 9 8 6 11 11 C 1.46241 * 114.27420 * 270.59285 * 10 9 8 12 12 N 1.50170 * 107.53189 * 58.40482 * 11 10 9 13 13 C 1.36944 * 120.53436 * 109.60734 * 12 11 10 14 14 H 1.07997 * 119.99612 * 156.70209 * 13 12 11 15 15 C 1.38812 * 120.00058 * 336.70308 * 13 12 11 16 16 N 1.31623 * 120.00187 * 340.43125 * 15 13 12 17 17 Si 1.86805 * 119.99828 * 160.42650 * 15 13 12 18 18 H 1.48501 * 109.46971 * 60.00132 * 17 15 13 19 19 H 1.48506 * 109.46833 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47151 * 300.00145 * 17 15 13 21 21 C 1.43433 * 118.92748 * 289.58727 * 12 11 10 22 22 H 1.09004 * 109.47390 * 300.00815 * 1 2 3 23 23 H 1.09007 * 109.46780 * 59.99725 * 1 2 3 24 24 H 1.09001 * 109.47815 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47116 * 239.99281 * 2 1 3 26 26 H 1.09004 * 109.47104 * 119.99870 * 2 1 3 27 27 H 0.97004 * 119.99838 * 0.02562 * 5 3 2 28 28 H 1.09000 * 109.21316 * 80.58277 * 8 6 5 29 29 H 1.08999 * 109.20848 * 321.26756 * 8 6 5 30 30 H 1.08998 * 110.24585 * 216.65504 * 9 8 6 31 31 H 1.08998 * 110.25057 * 338.70214 * 9 8 6 32 32 H 1.08998 * 108.52146 * 31.83302 * 10 9 8 33 33 H 1.08992 * 108.52254 * 149.51156 * 10 9 8 34 34 H 1.09001 * 109.84320 * 177.91008 * 11 10 9 35 35 H 1.08993 * 109.84645 * 298.90052 * 11 10 9 36 36 H 0.96999 * 119.99951 * 180.02562 * 16 15 13 37 37 H 1.09001 * 108.15472 * 213.28544 * 21 12 11 38 38 H 1.08999 * 108.15517 * 330.05796 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3574 1.6670 0.0005 6 6 3.8459 3.0481 0.0000 7 1 3.1746 3.6664 -0.5961 8 6 5.2655 3.0903 -0.6168 9 6 5.9951 4.3317 -0.1919 10 6 6.8741 3.9048 0.9792 11 6 6.2283 4.0140 2.2868 12 7 4.9932 3.1604 2.2540 13 6 4.9309 1.9989 2.9769 14 1 3.9724 1.5906 3.2611 15 6 6.0998 1.3464 3.3441 16 7 7.2221 1.5962 2.7035 17 14 6.0799 0.1139 4.7478 18 1 5.1396 -0.9891 4.4246 19 1 7.4448 -0.4388 4.9405 20 1 5.6398 0.7903 5.9942 21 6 3.8798 3.5814 1.4538 22 1 -0.3634 0.5140 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3635 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.9878 0.9297 0.0005 28 1 5.1850 3.0759 -1.7037 29 1 5.8256 2.2150 -0.2879 30 1 6.6113 4.7055 -1.0096 31 1 5.2859 5.0954 0.1273 32 1 7.1744 2.8681 0.8269 33 1 7.7694 4.5263 0.9847 34 1 6.9041 3.6575 3.0641 35 1 5.9558 5.0516 2.4794 36 1 8.0388 1.1399 2.9599 37 1 2.9639 3.2653 1.9532 38 1 3.8834 4.6706 1.4132 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034056589.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:26 Heat of formation + Delta-G solvation = -40.582607 kcal Electronic energy + Delta-G solvation = -18586.055893 eV Core-core repulsion = 15849.074841 eV Total energy + Delta-G solvation = -2736.981052 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.83964 -39.26589 -35.80791 -34.73369 -33.66803 -32.82485 -31.33832 -27.96990 -26.20697 -25.00809 -24.25336 -21.75541 -20.83304 -20.65518 -18.55136 -17.96808 -17.04026 -16.84938 -16.44085 -15.94400 -15.62065 -15.15717 -14.90228 -14.16000 -14.00288 -13.84700 -13.41606 -13.23924 -13.16513 -13.08390 -12.62881 -12.58752 -12.35076 -12.28971 -12.00168 -11.88284 -11.77820 -11.29387 -11.13497 -10.92212 -10.68466 -10.43048 -9.88861 -8.57661 -7.78400 -5.18133 1.47809 1.52688 1.57080 1.81126 2.50358 2.56033 3.34221 3.62658 3.90196 4.01331 4.17915 4.27676 4.30087 4.44926 4.55164 4.61491 4.69050 4.79639 4.86493 4.92623 5.01122 5.07315 5.09858 5.22446 5.32779 5.34380 5.37787 5.48792 5.61304 5.70509 5.80889 5.81851 6.23401 6.44753 6.78029 7.22043 7.43961 7.93848 8.45005 9.24985 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.010366 C = 0.007385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.697271 B = 2700.557028 C = 3790.797475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.140 4.140 3 C 0.500 3.500 4 O -0.597 6.597 5 N -0.703 5.703 6 C 0.123 3.877 7 H 0.070 0.930 8 C -0.099 4.099 9 C -0.105 4.105 10 C -0.122 4.122 11 C 0.166 3.834 12 N -0.593 5.593 13 C -0.247 4.247 14 H 0.049 0.951 15 C -0.033 4.033 16 N -0.910 5.910 17 Si 0.949 3.051 18 H -0.279 1.279 19 H -0.295 1.295 20 H -0.293 1.293 21 C 0.156 3.844 22 H 0.040 0.960 23 H 0.051 0.949 24 H 0.086 0.914 25 H 0.116 0.884 26 H 0.099 0.901 27 H 0.405 0.595 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.059 0.941 35 H 0.016 0.984 36 H 0.247 0.753 37 H 0.010 0.990 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.238 -1.436 -7.283 8.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.180 4.180 3 C 0.289 3.711 4 O -0.479 6.479 5 N -0.352 5.352 6 C 0.015 3.985 7 H 0.088 0.912 8 C -0.137 4.137 9 C -0.143 4.143 10 C -0.160 4.160 11 C 0.043 3.957 12 N -0.315 5.315 13 C -0.377 4.377 14 H 0.067 0.933 15 C -0.230 4.230 16 N -0.556 5.556 17 Si 0.779 3.221 18 H -0.205 1.205 19 H -0.221 1.221 20 H -0.220 1.220 21 C 0.026 3.974 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.104 0.896 25 H 0.134 0.866 26 H 0.117 0.883 27 H 0.239 0.761 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.057 0.943 37 H 0.028 0.972 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.611 -0.853 -7.229 8.616 hybrid contribution 0.508 -0.940 1.027 1.482 sum -4.103 -1.793 -6.202 7.650 Atomic orbital electron populations 1.21485 0.92982 1.02496 1.01810 1.21672 0.98565 0.91961 1.05768 1.21389 0.82076 0.92844 0.74812 1.90610 1.56311 1.48189 1.52829 1.46066 1.06887 1.09224 1.73007 1.22542 0.94890 0.82838 0.98230 0.91215 1.21542 0.94052 0.99251 0.98835 1.20950 0.98531 0.96757 0.98071 1.20822 0.97269 1.02362 0.95567 1.20122 0.87946 0.90056 0.97582 1.44278 1.14059 1.22971 1.50159 1.19101 0.91850 1.00558 1.26221 0.93281 1.25347 0.96459 0.99847 1.01330 1.70091 0.99724 1.45521 1.40224 0.85638 0.76091 0.79550 0.80813 1.20507 1.22115 1.22005 1.20749 0.89865 0.96391 0.90380 0.94060 0.92945 0.89551 0.86558 0.88307 0.76062 0.91842 0.92592 0.90504 0.92162 0.90893 0.94640 0.92304 0.96554 0.94323 0.97205 0.93961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.20 71.98 0.66 -2.43 16 2 C -0.14 -3.52 6.42 29.85 0.19 -3.33 16 3 C 0.50 17.45 7.66 87.66 0.67 18.12 16 4 O -0.60 -25.12 15.64 -3.02 -0.05 -25.16 16 5 N -0.70 -24.72 5.09 -436.52 -2.22 -26.94 16 6 C 0.12 4.57 2.91 46.27 0.13 4.71 16 7 H 0.07 2.61 7.58 -2.38 -0.02 2.59 16 8 C -0.10 -3.38 5.23 30.30 0.16 -3.22 16 9 C -0.11 -3.51 5.76 29.51 0.17 -3.34 16 10 C -0.12 -4.89 5.02 28.36 0.14 -4.75 16 11 C 0.17 7.54 5.24 83.58 0.44 7.98 16 12 N -0.59 -28.24 2.60 -707.84 -1.84 -30.08 16 13 C -0.25 -12.86 9.63 84.03 0.81 -12.05 16 14 H 0.05 2.65 7.89 -2.91 -0.02 2.63 16 15 C -0.03 -1.73 4.91 84.86 0.42 -1.31 16 16 N -0.91 -48.06 9.43 21.65 0.20 -47.85 16 17 Si 0.95 43.05 29.60 68.60 2.03 45.08 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 19 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 20 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 21 C 0.16 6.69 4.79 87.60 0.42 7.11 16 22 H 0.04 1.13 8.10 -2.39 -0.02 1.11 16 23 H 0.05 1.30 8.10 -2.38 -0.02 1.28 16 24 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.40 13.55 8.44 -92.71 -0.78 12.77 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.06 2.22 6.59 -2.39 -0.02 2.21 16 30 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 31 H 0.06 1.99 6.28 -2.39 -0.01 1.98 16 32 H 0.07 3.40 5.29 -2.39 -0.01 3.39 16 33 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 3.03 6.05 -2.39 -0.01 3.01 16 35 H 0.02 0.70 8.12 -2.39 -0.02 0.68 16 36 H 0.25 12.96 8.31 -92.71 -0.77 12.19 16 37 H 0.01 0.46 7.83 -2.39 -0.02 0.45 16 38 H 0.04 1.72 6.88 -2.39 -0.02 1.71 16 Total: -1.00 -59.84 294.75 2.60 -57.24 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.26 Total: 20.22 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 4.21 Total: 7.49 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -3.86 Total: -104.87 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.05 Total: -25.16 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -59.84 2.60 -57.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034056589.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.662 kcal (2) G-P(sol) polarization free energy of solvation -59.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds