Wall clock time and date at job start Sun Mar 29 2020 22:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47086 * 2 1 4 4 O 1.21284 * 120.00086 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00367 * 180.02562 * 3 2 1 6 6 C 1.46931 * 120.62722 * 354.95406 * 5 3 2 7 7 C 1.53198 * 108.77322 * 233.58736 * 6 5 3 8 8 C 1.53044 * 109.31088 * 305.36119 * 7 6 5 9 9 H 1.09002 * 109.45985 * 301.36231 * 8 7 6 10 10 N 1.46498 * 109.45950 * 181.38416 * 8 7 6 11 11 C 1.36935 * 119.99563 * 85.00431 * 10 8 7 12 12 H 1.07998 * 120.00554 * 359.97438 * 11 10 8 13 13 C 1.38816 * 119.99675 * 180.02562 * 11 10 8 14 14 N 1.31616 * 120.00267 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99983 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46989 * 270.00111 * 15 13 11 17 17 H 1.48500 * 109.47290 * 149.99733 * 15 13 11 18 18 H 1.48506 * 109.47262 * 29.99305 * 15 13 11 19 19 C 1.53042 * 109.53388 * 61.36731 * 8 7 6 20 20 C 1.46919 * 120.63350 * 174.92855 * 5 3 2 21 21 H 1.09006 * 109.58644 * 246.34124 * 20 5 3 22 22 C 1.52998 * 109.58771 * 6.62587 * 20 5 3 23 23 H 1.08999 * 109.46817 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46791 * 299.99296 * 1 2 3 25 25 H 1.08994 * 109.47741 * 59.99785 * 1 2 3 26 26 H 1.09001 * 109.46791 * 240.00704 * 2 1 3 27 27 H 1.08994 * 109.47741 * 120.00215 * 2 1 3 28 28 H 1.08996 * 109.58775 * 113.79901 * 6 5 3 29 29 H 1.09005 * 109.70266 * 353.43979 * 6 5 3 30 30 H 1.09002 * 109.49540 * 185.41239 * 7 6 5 31 31 H 1.08997 * 109.52791 * 65.32858 * 7 6 5 32 32 H 0.96996 * 120.00126 * 265.00498 * 10 8 7 33 33 H 0.97005 * 119.99698 * 0.02562 * 14 13 11 34 34 H 1.08997 * 109.50130 * 58.58649 * 19 8 7 35 35 H 1.09007 * 109.49502 * 178.68510 * 19 8 7 36 36 H 1.08999 * 109.47019 * 55.63582 * 22 20 5 37 37 H 1.09000 * 109.47279 * 175.64079 * 22 20 5 38 38 H 1.08999 * 109.47265 * 295.63777 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.3235 0.5658 0.1101 7 6 5.2780 0.8620 1.2713 8 6 5.9147 2.2383 1.0645 9 1 6.4487 2.2523 0.1144 10 7 6.8530 2.5108 2.1560 11 6 8.1404 2.0497 2.0833 12 1 8.4638 1.4847 1.2216 13 6 9.0294 2.3074 3.1178 14 7 8.6352 2.9955 4.1683 15 14 10.7857 1.6790 3.0184 16 1 10.8617 0.3246 3.6226 17 1 11.6843 2.6019 3.7573 18 1 11.2073 1.6107 1.5960 19 6 4.8227 3.3105 1.0513 20 6 3.8631 3.0421 -0.1123 21 1 4.3906 3.1616 -1.0587 22 6 2.6930 4.0257 -0.0495 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8932 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 4.8906 0.4827 -0.8170 29 1 3.7954 -0.3686 0.3005 30 1 6.0581 0.1014 1.3040 31 1 4.7234 0.8550 2.2096 32 1 6.5625 3.0179 2.9302 33 1 7.7232 3.3221 4.2197 34 1 4.2720 3.2806 1.9914 35 1 5.2789 4.2928 0.9274 36 1 2.1239 3.8555 0.8645 37 1 3.0756 5.0464 -0.0546 38 1 2.0457 3.8761 -0.9136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044388207.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:06 Heat of formation + Delta-G solvation = -23.329543 kcal Electronic energy + Delta-G solvation = -17985.343277 eV Core-core repulsion = 15249.110374 eV Total energy + Delta-G solvation = -2736.232903 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.41582 -37.51528 -34.73141 -33.68443 -32.08362 -31.72122 -29.05892 -26.97818 -24.83826 -23.86497 -23.01717 -21.40637 -20.21085 -18.78969 -17.30874 -16.79425 -15.94572 -15.72774 -14.87005 -14.22219 -14.04744 -13.97468 -13.61733 -13.46186 -13.16306 -12.56592 -12.35832 -12.16229 -11.98655 -11.77967 -11.62870 -11.46086 -11.18779 -10.85301 -10.81927 -10.55229 -10.44932 -10.08896 -10.02571 -9.22070 -8.93531 -8.92221 -8.40887 -7.07212 -6.12707 -3.13050 2.71115 3.08264 3.49392 3.54168 3.68281 4.53379 4.63661 4.89187 4.98824 5.05043 5.10896 5.22178 5.30206 5.40637 5.47308 5.55599 5.62331 5.67347 5.77580 5.82131 5.86314 5.97259 6.07539 6.09200 6.14063 6.30252 6.38832 6.40904 6.47507 6.70401 6.84394 6.96978 7.55914 7.77889 8.30277 8.72975 9.19819 10.06349 10.21638 11.35623 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042877 B = 0.005346 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.875194 B = 5236.531046 C = 5577.859351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.147 4.147 3 C 0.511 3.489 4 O -0.542 6.542 5 N -0.605 5.605 6 C 0.108 3.892 7 C -0.150 4.150 8 C 0.184 3.816 9 H 0.048 0.952 10 N -0.736 5.736 11 C -0.332 4.332 12 H 0.065 0.935 13 C -0.045 4.045 14 N -0.944 5.944 15 Si 1.082 2.918 16 H -0.296 1.296 17 H -0.288 1.288 18 H -0.295 1.295 19 C -0.136 4.136 20 C 0.146 3.854 21 H 0.069 0.931 22 C -0.132 4.132 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.367 0.633 33 H 0.255 0.745 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.445 -5.722 -9.876 16.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.187 4.187 3 C 0.300 3.700 4 O -0.420 6.420 5 N -0.339 5.339 6 C -0.016 4.016 7 C -0.192 4.192 8 C 0.074 3.926 9 H 0.066 0.934 10 N -0.377 5.377 11 C -0.463 4.463 12 H 0.083 0.917 13 C -0.242 4.242 14 N -0.589 5.589 15 Si 0.913 3.087 16 H -0.223 1.223 17 H -0.214 1.214 18 H -0.221 1.221 19 C -0.175 4.175 20 C 0.043 3.957 21 H 0.087 0.913 22 C -0.189 4.189 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.200 0.800 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.266 -5.393 -9.265 15.552 hybrid contribution -1.342 -0.012 -0.512 1.436 sum -12.608 -5.405 -9.777 16.846 Atomic orbital electron populations 1.21513 0.93275 1.01256 1.03178 1.21709 0.98309 0.94653 1.04029 1.20708 0.81866 0.91588 0.75881 1.90729 1.55835 1.45219 1.50240 1.48259 1.05531 1.07928 1.72190 1.21843 0.91061 0.88832 0.99817 1.22651 0.98043 1.01731 0.96741 1.20100 0.89076 0.90773 0.92669 0.93367 1.42449 1.09099 1.66005 1.20190 1.20061 0.88281 1.32185 1.05785 0.91723 1.25769 1.04772 1.00171 0.93517 1.70847 1.19268 1.38776 1.30012 0.83205 0.74970 0.75772 0.74750 1.22333 1.21387 1.22148 1.22307 0.96787 1.00410 0.97965 1.21288 0.95283 0.80765 0.98354 0.91294 1.22183 0.96330 0.96094 1.04326 0.92367 0.92080 0.92148 0.89219 0.89092 0.91538 0.90302 0.90596 0.92368 0.80032 0.93335 0.91965 0.90815 0.91162 0.94065 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.20 37.16 0.34 -0.96 16 2 C -0.15 -1.48 4.82 -27.88 -0.13 -1.62 16 3 C 0.51 7.08 7.60 -10.99 -0.08 7.00 16 4 O -0.54 -8.89 11.38 5.55 0.06 -8.82 16 5 N -0.61 -8.46 2.97 -165.21 -0.49 -8.96 16 6 C 0.11 1.38 6.32 -3.71 -0.02 1.36 16 7 C -0.15 -2.52 5.66 -26.61 -0.15 -2.67 16 8 C 0.18 3.57 2.73 -67.89 -0.19 3.39 16 9 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 10 N -0.74 -18.15 5.12 -53.38 -0.27 -18.43 16 11 C -0.33 -9.16 9.93 -15.06 -0.15 -9.31 16 12 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 13 C -0.04 -1.28 5.50 -17.43 -0.10 -1.38 16 14 N -0.94 -29.10 13.70 55.49 0.76 -28.34 16 15 Si 1.08 25.67 29.92 -169.99 -5.09 20.58 16 16 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 C -0.14 -2.31 4.84 -26.61 -0.13 -2.44 16 20 C 0.15 2.18 3.49 -67.60 -0.24 1.94 16 21 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 22 C -0.13 -1.96 7.59 37.16 0.28 -1.67 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 25 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 26 H 0.09 0.74 8.11 -51.93 -0.42 0.32 16 27 H 0.09 0.83 7.48 -51.93 -0.39 0.44 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.81 5.97 -51.93 -0.31 0.50 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.37 9.47 6.63 -40.82 -0.27 9.20 16 33 H 0.26 7.78 6.77 -40.82 -0.28 7.51 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.28 8.14 -51.92 -0.42 0.85 16 36 H 0.07 1.16 6.73 -51.93 -0.35 0.81 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 1.03 6.77 -51.93 -0.35 0.68 16 LS Contribution 297.81 15.07 4.49 4.49 Total: -1.00 -31.69 297.81 -7.32 -39.01 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.22 Total: 6.83 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -0.56 Total: -6.36 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.00 Total: -55.72 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.06 Total: -8.82 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.09 Total: 20.58 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.69 -7.32 -39.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044388207.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.676 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds