Wall clock time and date at job start Sun Mar 29 2020 22:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47086 * 2 1 4 4 O 1.21284 * 120.00086 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00367 * 180.02562 * 3 2 1 6 6 C 1.46931 * 120.62722 * 354.95406 * 5 3 2 7 7 C 1.53198 * 108.77322 * 233.58736 * 6 5 3 8 8 C 1.53044 * 109.31088 * 305.36119 * 7 6 5 9 9 H 1.09002 * 109.45985 * 301.36231 * 8 7 6 10 10 N 1.46498 * 109.45950 * 181.38416 * 8 7 6 11 11 C 1.36935 * 119.99563 * 85.00431 * 10 8 7 12 12 H 1.07998 * 120.00554 * 359.97438 * 11 10 8 13 13 C 1.38816 * 119.99675 * 180.02562 * 11 10 8 14 14 N 1.31616 * 120.00267 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99983 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46989 * 270.00111 * 15 13 11 17 17 H 1.48500 * 109.47290 * 149.99733 * 15 13 11 18 18 H 1.48506 * 109.47262 * 29.99305 * 15 13 11 19 19 C 1.53042 * 109.53388 * 61.36731 * 8 7 6 20 20 C 1.46919 * 120.63350 * 174.92855 * 5 3 2 21 21 H 1.09006 * 109.58644 * 246.34124 * 20 5 3 22 22 C 1.52998 * 109.58771 * 6.62587 * 20 5 3 23 23 H 1.08999 * 109.46817 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46791 * 299.99296 * 1 2 3 25 25 H 1.08994 * 109.47741 * 59.99785 * 1 2 3 26 26 H 1.09001 * 109.46791 * 240.00704 * 2 1 3 27 27 H 1.08994 * 109.47741 * 120.00215 * 2 1 3 28 28 H 1.08996 * 109.58775 * 113.79901 * 6 5 3 29 29 H 1.09005 * 109.70266 * 353.43979 * 6 5 3 30 30 H 1.09002 * 109.49540 * 185.41239 * 7 6 5 31 31 H 1.08997 * 109.52791 * 65.32858 * 7 6 5 32 32 H 0.96996 * 120.00126 * 265.00498 * 10 8 7 33 33 H 0.97005 * 119.99698 * 0.02562 * 14 13 11 34 34 H 1.08997 * 109.50130 * 58.58649 * 19 8 7 35 35 H 1.09007 * 109.49502 * 178.68510 * 19 8 7 36 36 H 1.08999 * 109.47019 * 55.63582 * 22 20 5 37 37 H 1.09000 * 109.47279 * 175.64079 * 22 20 5 38 38 H 1.08999 * 109.47265 * 295.63777 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.3235 0.5658 0.1101 7 6 5.2780 0.8620 1.2713 8 6 5.9147 2.2383 1.0645 9 1 6.4487 2.2523 0.1144 10 7 6.8530 2.5108 2.1560 11 6 8.1404 2.0497 2.0833 12 1 8.4638 1.4847 1.2216 13 6 9.0294 2.3074 3.1178 14 7 8.6352 2.9955 4.1683 15 14 10.7857 1.6790 3.0184 16 1 10.8617 0.3246 3.6226 17 1 11.6843 2.6019 3.7573 18 1 11.2073 1.6107 1.5960 19 6 4.8227 3.3105 1.0513 20 6 3.8631 3.0421 -0.1123 21 1 4.3906 3.1616 -1.0587 22 6 2.6930 4.0257 -0.0495 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8932 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 4.8906 0.4827 -0.8170 29 1 3.7954 -0.3686 0.3005 30 1 6.0581 0.1014 1.3040 31 1 4.7234 0.8550 2.2096 32 1 6.5625 3.0179 2.9302 33 1 7.7232 3.3221 4.2197 34 1 4.2720 3.2806 1.9914 35 1 5.2789 4.2928 0.9274 36 1 2.1239 3.8555 0.8645 37 1 3.0756 5.0464 -0.0546 38 1 2.0457 3.8761 -0.9136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044388207.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:06 Heat of formation + Delta-G solvation = -43.635814 kcal Electronic energy + Delta-G solvation = -17986.223823 eV Core-core repulsion = 15249.110374 eV Total energy + Delta-G solvation = -2737.113449 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.56602 -38.87405 -36.44993 -34.72476 -33.83564 -32.74389 -30.77130 -28.36896 -26.04599 -25.40939 -24.52892 -22.63188 -21.64846 -19.95197 -19.30801 -17.87311 -17.09436 -16.99617 -16.47103 -15.95814 -15.39565 -15.18716 -15.10325 -14.70203 -14.61743 -13.71793 -13.45318 -13.38242 -13.27580 -12.96557 -12.82266 -12.62959 -12.53980 -12.39003 -12.11143 -11.98848 -11.95461 -11.85165 -11.63113 -11.18678 -10.89447 -10.06366 -9.59654 -9.12850 -8.38122 -5.32518 1.59279 1.65835 1.69987 1.83690 2.00829 2.72134 3.40936 3.51637 3.60963 3.82295 3.96966 4.01973 4.15927 4.22990 4.26157 4.27490 4.49783 4.54015 4.59807 4.64437 4.75181 4.81847 4.92967 4.98303 5.00202 5.05258 5.10648 5.18665 5.32480 5.37912 5.43475 5.61321 5.66875 6.48156 6.49333 7.09157 7.23073 7.99041 8.12413 9.13653 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042877 B = 0.005346 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.875194 B = 5236.531046 C = 5577.859351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.142 4.142 3 C 0.503 3.497 4 O -0.572 6.572 5 N -0.609 5.609 6 C 0.116 3.884 7 C -0.141 4.141 8 C 0.177 3.823 9 H 0.046 0.954 10 N -0.751 5.751 11 C -0.325 4.325 12 H 0.071 0.929 13 C -0.107 4.107 14 N -0.979 5.979 15 Si 1.130 2.870 16 H -0.284 1.284 17 H -0.297 1.297 18 H -0.271 1.271 19 C -0.124 4.124 20 C 0.150 3.850 21 H 0.083 0.917 22 C -0.120 4.120 23 H 0.084 0.916 24 H 0.042 0.958 25 H 0.050 0.950 26 H 0.118 0.882 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.356 0.644 33 H 0.242 0.758 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.696 -7.660 -11.657 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.181 4.181 3 C 0.293 3.707 4 O -0.453 6.453 5 N -0.342 5.342 6 C -0.006 4.006 7 C -0.182 4.182 8 C 0.069 3.931 9 H 0.064 0.936 10 N -0.393 5.393 11 C -0.457 4.457 12 H 0.089 0.911 13 C -0.298 4.298 14 N -0.628 5.628 15 Si 0.955 3.045 16 H -0.211 1.211 17 H -0.223 1.223 18 H -0.196 1.196 19 C -0.163 4.163 20 C 0.046 3.954 21 H 0.101 0.899 22 C -0.177 4.177 23 H 0.103 0.897 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.136 0.864 27 H 0.124 0.876 28 H 0.103 0.897 29 H 0.132 0.868 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.187 0.813 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.560 -7.364 -11.099 17.637 hybrid contribution -1.346 0.615 0.002 1.480 sum -12.906 -6.749 -11.097 18.310 Atomic orbital electron populations 1.21509 0.93166 1.02537 1.01841 1.21782 0.98345 0.91993 1.06007 1.21465 0.81338 0.93063 0.74802 1.90723 1.56450 1.46678 1.51427 1.48345 1.06064 1.07610 1.72202 1.21881 0.90469 0.89676 0.98603 1.22433 0.98384 0.99260 0.98076 1.20364 0.88920 0.93049 0.90762 0.93589 1.42703 1.09365 1.66049 1.21139 1.20409 0.89356 1.30570 1.05330 0.91138 1.27188 1.08623 1.00590 0.93371 1.70967 1.18737 1.41352 1.31699 0.82596 0.70601 0.75381 0.75958 1.21126 1.22349 1.19591 1.22156 0.96354 0.99319 0.98446 1.21208 0.94756 0.81815 0.97637 0.89916 1.22023 0.95929 0.96665 1.03088 0.89724 0.93859 0.93114 0.86420 0.87559 0.89713 0.86765 0.91601 0.93823 0.81277 0.94750 0.93425 0.91580 0.93189 0.93174 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.20 71.98 0.66 -1.58 16 2 C -0.14 -2.35 4.82 29.85 0.14 -2.21 16 3 C 0.50 12.85 7.60 87.66 0.67 13.52 16 4 O -0.57 -18.26 11.38 -3.04 -0.03 -18.30 16 5 N -0.61 -15.62 2.97 -795.01 -2.36 -17.98 16 6 C 0.12 2.59 6.32 86.36 0.55 3.13 16 7 C -0.14 -4.52 5.66 30.68 0.17 -4.34 16 8 C 0.18 6.79 2.73 45.02 0.12 6.92 16 9 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 10 N -0.75 -37.56 5.12 -322.81 -1.65 -39.21 16 11 C -0.33 -17.91 9.93 84.03 0.83 -17.08 16 12 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 13 C -0.11 -6.16 5.50 84.86 0.47 -5.70 16 14 N -0.98 -61.67 13.70 21.65 0.30 -61.37 16 15 Si 1.13 51.39 29.92 68.60 2.05 53.44 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 17 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 18 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 19 C -0.12 -4.20 4.84 30.67 0.15 -4.05 16 20 C 0.15 4.25 3.49 44.98 0.16 4.41 16 21 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 22 C -0.12 -3.47 7.59 71.98 0.55 -2.93 16 23 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.04 0.87 8.10 -2.39 -0.02 0.85 16 25 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 26 H 0.12 1.36 8.11 -2.39 -0.02 1.34 16 27 H 0.11 1.50 7.48 -2.39 -0.02 1.48 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.11 1.80 5.97 -2.38 -0.01 1.79 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.36 19.03 6.63 -92.71 -0.61 18.42 16 33 H 0.24 15.31 6.77 -92.70 -0.63 14.68 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 2.31 8.14 -2.38 -0.02 2.30 16 36 H 0.05 1.65 6.73 -2.39 -0.02 1.63 16 37 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 1.92 6.77 -2.39 -0.02 1.91 16 Total: -1.00 -69.51 297.81 3.33 -66.19 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.56 Total: 27.14 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 4.47 Total: -9.91 kcal Atomic # 7 Polarization: -114.85 SS G_CDS: -3.72 Total: -118.56 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.03 Total: -18.30 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.05 Total: 53.44 kcal Total: -69.51 3.33 -66.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044388207.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.553 kcal (2) G-P(sol) polarization free energy of solvation -69.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds