Wall clock time and date at job start Sun Mar 29 2020 22:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.46975 * 2 1 4 4 O 1.21283 * 120.00124 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99827 * 179.97438 * 3 2 1 6 6 C 1.46922 * 120.62993 * 354.21616 * 5 3 2 7 7 C 1.53199 * 108.77378 * 126.36950 * 6 5 3 8 8 C 1.53044 * 109.31162 * 54.63282 * 7 6 5 9 9 H 1.08997 * 109.45957 * 178.62876 * 8 7 6 10 10 N 1.46498 * 109.45798 * 58.65686 * 8 7 6 11 11 C 1.36937 * 119.99928 * 84.97501 * 10 8 7 12 12 H 1.07998 * 120.00403 * 359.97438 * 11 10 8 13 13 C 1.38816 * 119.99926 * 180.02562 * 11 10 8 14 14 N 1.31621 * 119.99754 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00219 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47250 * 89.99613 * 15 13 11 17 17 H 1.48508 * 109.46739 * 329.99582 * 15 13 11 18 18 H 1.48498 * 109.47154 * 209.99934 * 15 13 11 19 19 C 1.53041 * 109.52897 * 298.64402 * 8 7 6 20 20 C 1.46926 * 120.62901 * 174.19414 * 5 3 2 21 21 H 1.08996 * 109.58774 * 113.70194 * 20 5 3 22 22 C 1.53006 * 109.58603 * 353.42030 * 20 5 3 23 23 H 1.09001 * 109.47634 * 60.00148 * 1 2 3 24 24 H 1.09007 * 109.47317 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47384 * 299.99491 * 1 2 3 26 26 H 1.09003 * 109.47377 * 240.00378 * 2 1 3 27 27 H 1.08993 * 109.47214 * 120.00578 * 2 1 3 28 28 H 1.09002 * 109.58911 * 6.58405 * 6 5 3 29 29 H 1.08994 * 109.70564 * 246.22369 * 6 5 3 30 30 H 1.09000 * 109.49472 * 294.68182 * 7 6 5 31 31 H 1.08995 * 109.52210 * 174.60107 * 7 6 5 32 32 H 0.97001 * 120.00172 * 264.96919 * 10 8 7 33 33 H 0.97001 * 120.00526 * 0.02562 * 14 13 11 34 34 H 1.08994 * 109.49843 * 181.31269 * 19 8 7 35 35 H 1.09004 * 109.49229 * 301.40813 * 19 8 7 36 36 H 1.09001 * 109.47417 * 65.78447 * 22 20 5 37 37 H 1.09001 * 109.47077 * 185.78760 * 22 20 5 38 38 H 1.09007 * 109.46878 * 305.78644 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3231 0.5673 0.1285 7 6 5.3172 0.6462 -1.0345 8 6 5.9509 2.0389 -1.0650 9 1 6.6766 2.0900 -1.8767 10 7 6.6256 2.2961 0.2097 11 6 7.9086 1.8596 0.4056 12 1 8.4231 1.3253 -0.3794 13 6 8.5477 2.1028 1.6137 14 7 7.9205 2.7535 2.5706 15 14 10.2976 1.5067 1.8813 16 1 11.2510 2.5601 1.4492 17 1 10.5278 0.2741 1.0855 18 1 10.5053 1.2117 3.3218 19 6 4.8625 3.0915 -1.2873 20 6 3.8635 3.0405 -0.1274 21 1 4.3591 3.3349 0.7977 22 6 2.6993 3.9919 -0.4108 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.7970 -0.3868 0.0953 29 1 4.8587 0.6566 1.0736 30 1 4.7940 0.4639 -1.9732 31 1 6.0955 -0.1048 -0.9000 32 1 6.1634 2.7757 0.9149 33 1 7.0116 3.0627 2.4319 34 1 5.3171 4.0811 -1.3322 35 1 4.3437 2.8862 -2.2236 36 1 2.0361 4.0223 0.4538 37 1 3.0866 4.9917 -0.6069 38 1 2.1457 3.6395 -1.2811 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044388209.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:10 Heat of formation + Delta-G solvation = -21.380684 kcal Electronic energy + Delta-G solvation = -18385.627710 eV Core-core repulsion = 15649.479316 eV Total energy + Delta-G solvation = -2736.148394 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.31824 -37.58125 -34.39547 -33.55199 -32.07112 -31.61224 -28.83255 -26.98972 -24.81707 -23.75169 -23.40890 -21.52361 -19.84151 -18.35666 -17.27085 -16.66264 -15.95337 -15.45641 -14.91154 -14.18992 -13.97992 -13.85385 -13.65885 -13.39009 -13.01793 -12.62236 -12.24863 -12.06381 -11.88477 -11.68880 -11.54551 -11.26070 -11.13794 -10.83474 -10.68588 -10.55991 -10.33495 -10.17281 -10.01357 -9.19540 -8.96939 -8.80746 -8.18746 -7.07312 -6.12889 -3.13482 2.85042 3.25725 3.49440 3.53781 3.67750 4.64323 4.67409 5.01183 5.08900 5.18041 5.23645 5.32551 5.42447 5.51905 5.61218 5.64716 5.68764 5.75503 5.81037 5.90906 5.94606 6.05150 6.11063 6.16966 6.21895 6.36867 6.42880 6.55338 6.65992 6.68918 6.74932 7.02136 7.74845 7.78550 8.44999 8.72077 9.18833 10.05334 10.20729 11.34981 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035429 B = 0.006362 C = 0.006066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.131951 B = 4399.901859 C = 4615.123627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.146 4.146 3 C 0.510 3.490 4 O -0.546 6.546 5 N -0.601 5.601 6 C 0.114 3.886 7 C -0.149 4.149 8 C 0.179 3.821 9 H 0.051 0.949 10 N -0.733 5.733 11 C -0.331 4.331 12 H 0.064 0.936 13 C -0.044 4.044 14 N -0.944 5.944 15 Si 1.081 2.919 16 H -0.296 1.296 17 H -0.295 1.295 18 H -0.289 1.289 19 C -0.134 4.134 20 C 0.145 3.855 21 H 0.073 0.927 22 C -0.134 4.134 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.366 0.634 33 H 0.254 0.746 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.542 -5.259 -6.972 13.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.186 4.186 3 C 0.298 3.702 4 O -0.425 6.425 5 N -0.334 5.334 6 C -0.008 4.008 7 C -0.190 4.190 8 C 0.069 3.931 9 H 0.069 0.931 10 N -0.377 5.377 11 C -0.462 4.462 12 H 0.082 0.918 13 C -0.242 4.242 14 N -0.589 5.589 15 Si 0.913 3.087 16 H -0.224 1.224 17 H -0.222 1.222 18 H -0.215 1.215 19 C -0.173 4.173 20 C 0.042 3.958 21 H 0.091 0.909 22 C -0.191 4.191 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.201 0.799 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.541 -4.942 -6.037 12.325 hybrid contribution -1.120 0.014 -0.953 1.471 sum -10.662 -4.928 -6.991 13.668 Atomic orbital electron populations 1.21507 0.93372 1.01129 1.03116 1.21691 0.98160 0.94806 1.03984 1.20673 0.81937 0.91498 0.76043 1.90701 1.55823 1.45285 1.50701 1.48227 1.05399 1.08210 1.71579 1.21700 0.90152 0.88129 1.00816 1.22493 0.98267 1.01774 0.96446 1.20125 0.91856 0.90910 0.90247 0.93082 1.42518 1.14114 1.68539 1.12522 1.20064 0.90863 1.33767 1.01467 0.91750 1.25733 1.05804 1.00266 0.92386 1.70860 1.13508 1.40420 1.34128 0.83208 0.74514 0.75312 0.75703 1.22373 1.22200 1.21464 1.22251 0.96761 1.00765 0.97536 1.21198 0.94785 0.80946 0.98827 0.90932 1.22182 0.96680 0.96547 1.03685 0.92205 0.92463 0.92118 0.89267 0.89226 0.90958 0.90176 0.93227 0.90798 0.79913 0.93450 0.90892 0.92012 0.90608 0.94086 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 9.20 37.16 0.34 -1.09 16 2 C -0.15 -1.69 4.78 -27.88 -0.13 -1.82 16 3 C 0.51 7.89 7.50 -10.98 -0.08 7.80 16 4 O -0.55 -9.69 11.55 5.55 0.06 -9.63 16 5 N -0.60 -9.66 2.97 -165.24 -0.49 -10.15 16 6 C 0.11 1.80 6.09 -3.71 -0.02 1.78 16 7 C -0.15 -2.46 5.78 -26.61 -0.15 -2.61 16 8 C 0.18 3.42 3.10 -67.89 -0.21 3.21 16 9 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 10 N -0.73 -17.31 4.31 -53.38 -0.23 -17.54 16 11 C -0.33 -8.88 9.93 -15.06 -0.15 -9.03 16 12 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 13 C -0.04 -1.25 5.50 -17.43 -0.10 -1.34 16 14 N -0.94 -28.59 13.70 55.49 0.76 -27.83 16 15 Si 1.08 25.41 29.92 -169.99 -5.09 20.32 16 16 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.30 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 C -0.13 -2.25 5.07 -26.63 -0.13 -2.39 16 20 C 0.15 2.49 3.19 -67.61 -0.22 2.27 16 21 H 0.07 1.39 6.65 -51.93 -0.35 1.05 16 22 C -0.13 -2.17 7.61 37.16 0.28 -1.89 16 23 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.09 0.90 7.93 -51.93 -0.41 0.49 16 27 H 0.09 0.94 7.70 -51.93 -0.40 0.54 16 28 H 0.07 0.92 5.93 -51.93 -0.31 0.61 16 29 H 0.08 1.50 7.74 -51.93 -0.40 1.10 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.37 9.07 4.90 -40.82 -0.20 8.87 16 33 H 0.25 7.62 6.77 -40.82 -0.28 7.34 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.33 6.54 -51.93 -0.34 0.99 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 1.00 6.96 -51.93 -0.36 0.64 16 LS Contribution 293.59 15.07 4.42 4.42 Total: -1.00 -30.55 293.59 -7.18 -37.73 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.05 Total: 7.78 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.57 Total: -5.11 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.04 Total: -55.53 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.06 Total: -9.63 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.09 Total: 20.32 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.55 -7.18 -37.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044388209.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.349 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds