Wall clock time and date at job start Sun Mar 29 2020 22:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.46975 * 2 1 4 4 O 1.21283 * 120.00124 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99827 * 179.97438 * 3 2 1 6 6 C 1.46922 * 120.62993 * 354.21616 * 5 3 2 7 7 C 1.53199 * 108.77378 * 126.36950 * 6 5 3 8 8 C 1.53044 * 109.31162 * 54.63282 * 7 6 5 9 9 H 1.08997 * 109.45957 * 178.62876 * 8 7 6 10 10 N 1.46498 * 109.45798 * 58.65686 * 8 7 6 11 11 C 1.36937 * 119.99928 * 84.97501 * 10 8 7 12 12 H 1.07998 * 120.00403 * 359.97438 * 11 10 8 13 13 C 1.38816 * 119.99926 * 180.02562 * 11 10 8 14 14 N 1.31621 * 119.99754 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00219 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47250 * 89.99613 * 15 13 11 17 17 H 1.48508 * 109.46739 * 329.99582 * 15 13 11 18 18 H 1.48498 * 109.47154 * 209.99934 * 15 13 11 19 19 C 1.53041 * 109.52897 * 298.64402 * 8 7 6 20 20 C 1.46926 * 120.62901 * 174.19414 * 5 3 2 21 21 H 1.08996 * 109.58774 * 113.70194 * 20 5 3 22 22 C 1.53006 * 109.58603 * 353.42030 * 20 5 3 23 23 H 1.09001 * 109.47634 * 60.00148 * 1 2 3 24 24 H 1.09007 * 109.47317 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47384 * 299.99491 * 1 2 3 26 26 H 1.09003 * 109.47377 * 240.00378 * 2 1 3 27 27 H 1.08993 * 109.47214 * 120.00578 * 2 1 3 28 28 H 1.09002 * 109.58911 * 6.58405 * 6 5 3 29 29 H 1.08994 * 109.70564 * 246.22369 * 6 5 3 30 30 H 1.09000 * 109.49472 * 294.68182 * 7 6 5 31 31 H 1.08995 * 109.52210 * 174.60107 * 7 6 5 32 32 H 0.97001 * 120.00172 * 264.96919 * 10 8 7 33 33 H 0.97001 * 120.00526 * 0.02562 * 14 13 11 34 34 H 1.08994 * 109.49843 * 181.31269 * 19 8 7 35 35 H 1.09004 * 109.49229 * 301.40813 * 19 8 7 36 36 H 1.09001 * 109.47417 * 65.78447 * 22 20 5 37 37 H 1.09001 * 109.47077 * 185.78760 * 22 20 5 38 38 H 1.09007 * 109.46878 * 305.78644 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3231 0.5673 0.1285 7 6 5.3172 0.6462 -1.0345 8 6 5.9509 2.0389 -1.0650 9 1 6.6766 2.0900 -1.8767 10 7 6.6256 2.2961 0.2097 11 6 7.9086 1.8596 0.4056 12 1 8.4231 1.3253 -0.3794 13 6 8.5477 2.1028 1.6137 14 7 7.9205 2.7535 2.5706 15 14 10.2976 1.5067 1.8813 16 1 11.2510 2.5601 1.4492 17 1 10.5278 0.2741 1.0855 18 1 10.5053 1.2117 3.3218 19 6 4.8625 3.0915 -1.2873 20 6 3.8635 3.0405 -0.1274 21 1 4.3591 3.3349 0.7977 22 6 2.6993 3.9919 -0.4108 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.7970 -0.3868 0.0953 29 1 4.8587 0.6566 1.0736 30 1 4.7940 0.4639 -1.9732 31 1 6.0955 -0.1048 -0.9000 32 1 6.1634 2.7757 0.9149 33 1 7.0116 3.0627 2.4319 34 1 5.3171 4.0811 -1.3322 35 1 4.3437 2.8862 -2.2236 36 1 2.0361 4.0223 0.4538 37 1 3.0866 4.9917 -0.6069 38 1 2.1457 3.6395 -1.2811 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044388209.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:09 Heat of formation + Delta-G solvation = -40.259993 kcal Electronic energy + Delta-G solvation = -18386.446378 eV Core-core repulsion = 15649.479316 eV Total energy + Delta-G solvation = -2736.967062 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.61173 -39.00289 -36.13094 -34.71479 -33.80375 -32.74171 -30.60033 -28.40647 -25.96110 -25.52394 -24.94744 -22.82302 -21.21305 -19.79783 -19.15512 -17.88161 -17.29675 -16.88437 -16.42723 -15.83738 -15.44766 -15.17149 -15.11848 -14.79860 -14.48164 -13.92845 -13.43282 -13.40283 -13.21879 -12.95265 -12.76286 -12.63807 -12.54001 -12.22521 -12.08825 -11.99199 -11.90140 -11.81803 -11.64524 -11.16464 -10.89985 -10.08050 -9.55654 -9.06833 -8.33973 -5.27715 1.60289 1.65361 1.70197 1.83897 2.01768 2.73928 3.44339 3.54730 3.71687 3.86658 3.92069 4.00136 4.15646 4.24470 4.25065 4.28974 4.41873 4.55134 4.65122 4.70440 4.81242 4.82391 4.97898 4.99419 5.04436 5.06150 5.17033 5.18129 5.26355 5.32658 5.36383 5.66486 5.68275 6.51391 6.52897 7.13211 7.22516 8.04156 8.16646 9.17450 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035429 B = 0.006362 C = 0.006066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.131951 B = 4399.901859 C = 4615.123627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.141 4.141 3 C 0.502 3.498 4 O -0.573 6.573 5 N -0.604 5.604 6 C 0.121 3.879 7 C -0.139 4.139 8 C 0.169 3.831 9 H 0.045 0.955 10 N -0.743 5.743 11 C -0.320 4.320 12 H 0.068 0.932 13 C -0.106 4.106 14 N -0.980 5.980 15 Si 1.127 2.873 16 H -0.290 1.290 17 H -0.271 1.271 18 H -0.298 1.298 19 C -0.122 4.122 20 C 0.145 3.855 21 H 0.042 0.958 22 C -0.119 4.119 23 H 0.050 0.950 24 H 0.085 0.915 25 H 0.044 0.956 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.358 0.642 33 H 0.241 0.759 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.034 -7.075 -8.568 15.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.181 4.181 3 C 0.293 3.707 4 O -0.453 6.453 5 N -0.336 5.336 6 C -0.002 4.002 7 C -0.180 4.180 8 C 0.061 3.939 9 H 0.063 0.937 10 N -0.386 5.386 11 C -0.451 4.451 12 H 0.086 0.914 13 C -0.297 4.297 14 N -0.629 5.629 15 Si 0.953 3.047 16 H -0.217 1.217 17 H -0.196 1.196 18 H -0.224 1.224 19 C -0.161 4.161 20 C 0.041 3.959 21 H 0.060 0.940 22 C -0.176 4.176 23 H 0.069 0.931 24 H 0.104 0.896 25 H 0.063 0.937 26 H 0.133 0.867 27 H 0.123 0.877 28 H 0.130 0.870 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.191 0.809 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.061 -6.784 -7.692 14.367 hybrid contribution -1.040 0.597 -0.524 1.309 sum -11.101 -6.186 -8.216 15.133 Atomic orbital electron populations 1.21500 0.92810 1.02596 1.01922 1.21767 0.98564 0.91915 1.05828 1.21465 0.81200 0.93129 0.74901 1.90695 1.56259 1.46695 1.51676 1.48278 1.05958 1.07613 1.71791 1.21641 0.90162 0.89722 0.98653 1.22346 0.98254 0.99145 0.98250 1.20393 0.92321 0.93330 0.87857 0.93710 1.42681 1.13524 1.68464 1.13937 1.20385 0.91903 1.31830 1.00995 0.91395 1.27046 1.09079 1.00860 0.92688 1.70976 1.13306 1.43141 1.35430 0.82607 0.70777 0.75946 0.75333 1.21674 1.19583 1.22448 1.22121 0.95958 0.99699 0.98296 1.21075 0.95022 0.82227 0.97572 0.93991 1.22010 0.95878 0.96918 1.02797 0.93106 0.89620 0.93668 0.86742 0.87710 0.87004 0.93839 0.90102 0.91751 0.80912 0.94857 0.91575 0.89701 0.92238 0.93037 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.20 71.98 0.66 -1.78 16 2 C -0.14 -2.77 4.78 29.85 0.14 -2.63 16 3 C 0.50 14.63 7.50 87.66 0.66 15.29 16 4 O -0.57 -19.84 11.55 -3.04 -0.04 -19.88 16 5 N -0.60 -18.61 2.97 -795.07 -2.36 -20.97 16 6 C 0.12 3.58 6.09 86.37 0.53 4.10 16 7 C -0.14 -4.28 5.78 30.68 0.18 -4.11 16 8 C 0.17 6.31 3.10 45.02 0.14 6.45 16 9 H 0.04 1.73 8.08 -2.39 -0.02 1.71 16 10 N -0.74 -35.48 4.31 -322.81 -1.39 -36.87 16 11 C -0.32 -17.18 9.93 84.03 0.83 -16.34 16 12 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 13 C -0.11 -6.01 5.50 84.86 0.47 -5.54 16 14 N -0.98 -60.91 13.70 21.65 0.30 -60.61 16 15 Si 1.13 51.19 29.92 68.60 2.05 53.25 16 16 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 17 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 19 C -0.12 -3.97 5.07 30.66 0.16 -3.81 16 20 C 0.14 4.93 3.19 44.97 0.14 5.07 16 21 H 0.04 1.69 6.65 -2.39 -0.02 1.67 16 22 C -0.12 -3.82 7.61 71.98 0.55 -3.27 16 23 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 24 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 25 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 26 H 0.11 1.74 7.93 -2.39 -0.02 1.72 16 27 H 0.10 1.80 7.70 -2.39 -0.02 1.78 16 28 H 0.11 2.42 5.93 -2.39 -0.01 2.41 16 29 H 0.04 1.63 7.74 -2.39 -0.02 1.61 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.36 18.35 4.90 -92.71 -0.45 17.90 16 33 H 0.24 15.06 6.77 -92.71 -0.63 14.43 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.06 2.10 6.54 -2.39 -0.02 2.09 16 37 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.06 1.91 6.96 -2.38 -0.02 1.90 16 Total: -1.00 -66.95 293.59 3.74 -63.21 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 0.72 Total: 28.44 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 4.45 Total: -6.57 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -3.46 Total: -118.45 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.04 Total: -19.88 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 2.05 Total: 53.25 kcal Total: -66.95 3.74 -63.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044388209.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.953 kcal (2) G-P(sol) polarization free energy of solvation -66.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds