Wall clock time and date at job start Sun Mar 29 2020 22:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50707 * 109.47240 * 2 1 4 4 O 1.21285 * 119.99860 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00036 * 180.02562 * 3 2 1 6 6 C 1.46497 * 120.00091 * 180.02562 * 5 3 2 7 7 H 1.09000 * 109.49854 * 35.05818 * 6 5 3 8 8 C 1.53035 * 109.52649 * 155.14353 * 6 5 3 9 9 C 1.53070 * 109.65751 * 181.26413 * 8 6 5 10 10 C 1.53195 * 109.29849 * 298.84542 * 9 8 6 11 11 H 1.09004 * 109.58720 * 294.56831 * 10 9 8 12 12 C 1.52998 * 109.58990 * 174.28155 * 10 9 8 13 13 N 1.46924 * 108.88912 * 54.42048 * 10 9 8 14 14 C 1.36942 * 120.62941 * 126.44260 * 13 10 9 15 15 H 1.08001 * 119.99643 * 330.87841 * 14 13 10 16 16 C 1.38813 * 120.00031 * 150.87614 * 14 13 10 17 17 N 1.31619 * 120.00115 * 160.77754 * 16 14 13 18 18 Si 1.86802 * 120.00152 * 340.77090 * 16 14 13 19 19 H 1.48494 * 109.46915 * 92.29207 * 18 16 14 20 20 H 1.48492 * 109.47346 * 212.29675 * 18 16 14 21 21 H 1.48507 * 109.46755 * 332.29248 * 18 16 14 22 22 C 1.46924 * 118.74253 * 306.46470 * 13 10 9 23 23 H 1.08997 * 109.47317 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47069 * 299.99853 * 1 2 3 25 25 H 1.09002 * 109.47506 * 59.99769 * 1 2 3 26 26 H 1.09001 * 109.46763 * 240.00599 * 2 1 3 27 27 H 1.09001 * 109.47235 * 120.00708 * 2 1 3 28 28 H 0.97001 * 119.99688 * 359.97438 * 5 3 2 29 29 H 1.08998 * 109.46101 * 301.34846 * 8 6 5 30 30 H 1.09007 * 109.45876 * 61.32193 * 8 6 5 31 31 H 1.09003 * 109.62272 * 178.83218 * 9 8 6 32 32 H 1.08994 * 109.39338 * 58.72496 * 9 8 6 33 33 H 1.09000 * 109.46984 * 300.28399 * 12 10 9 34 34 H 1.08996 * 109.46839 * 180.28518 * 12 10 9 35 35 H 1.08991 * 109.47114 * 60.28321 * 12 10 9 36 36 H 0.96993 * 120.00209 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.59015 * 173.39931 * 22 13 10 38 38 H 1.08997 * 109.58597 * 293.82041 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8458 3.0483 0.0000 7 1 3.1744 3.6713 0.5909 8 6 5.2504 3.0939 0.6056 9 6 5.7511 4.5401 0.6366 10 6 5.8203 5.0827 -0.7944 11 1 6.5760 4.5344 -1.3569 12 6 6.1825 6.5688 -0.7625 13 7 4.5085 4.9089 -1.4329 14 6 3.8680 5.9719 -2.0116 15 1 4.0320 6.9710 -1.6356 16 6 3.0079 5.7654 -3.0814 17 7 2.1173 6.6819 -3.3964 18 14 3.1146 4.1867 -4.0743 19 1 2.1766 3.1830 -3.5105 20 1 2.7515 4.4649 -5.4870 21 1 4.5008 3.6572 -4.0147 22 6 3.8968 3.5730 -1.4383 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.9877 0.9298 -0.0005 29 1 5.2213 2.6981 1.6208 30 1 5.9268 2.4907 -0.0001 31 1 6.7431 4.5744 1.0870 32 1 5.0633 5.1487 1.2236 33 1 5.4257 7.1152 -0.1997 34 1 6.2262 6.9540 -1.7812 35 1 7.1534 6.6960 -0.2840 36 1 1.5161 6.5374 -4.1436 37 1 2.8857 3.6357 -1.8406 38 1 4.4952 2.8996 -2.0519 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071279463.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:38 Heat of formation + Delta-G solvation = -26.373446 kcal Electronic energy + Delta-G solvation = -18362.875542 eV Core-core repulsion = 15626.510645 eV Total energy + Delta-G solvation = -2736.364897 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.64630 -37.88139 -34.54387 -32.81948 -32.67542 -30.69168 -30.59329 -26.38245 -25.05390 -23.87665 -22.63606 -20.70537 -20.07658 -19.22622 -16.90998 -16.52698 -15.92269 -15.37062 -14.90248 -14.56800 -13.84728 -13.74503 -13.44579 -13.23573 -12.89889 -12.54586 -12.26736 -11.97795 -11.68899 -11.68123 -11.42048 -11.24589 -11.11045 -10.76299 -10.69185 -10.34336 -10.24254 -9.98708 -9.62746 -9.53448 -9.31084 -8.78759 -8.44800 -6.87589 -5.87077 -3.24896 2.96507 3.40875 3.46828 3.51632 3.54599 4.61071 4.83999 5.00358 5.10945 5.12803 5.22582 5.25961 5.47821 5.52898 5.60319 5.77524 5.79113 5.95489 5.97182 6.05000 6.14060 6.25854 6.27559 6.29641 6.36687 6.49941 6.56434 6.66705 6.70891 6.91698 7.02473 7.11694 7.81448 8.04886 8.42935 8.58069 9.00926 9.80398 10.16545 11.28589 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.019615 B = 0.010251 C = 0.007532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.147991 B = 2730.822761 C = 3716.355798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.502 3.498 4 O -0.530 6.530 5 N -0.729 5.729 6 C 0.125 3.875 7 H 0.090 0.910 8 C -0.116 4.116 9 C -0.128 4.128 10 C 0.169 3.831 11 H 0.029 0.971 12 C -0.137 4.137 13 N -0.598 5.598 14 C -0.261 4.261 15 H 0.092 0.908 16 C 0.028 3.972 17 N -0.907 5.907 18 Si 0.880 3.120 19 H -0.288 1.288 20 H -0.304 1.304 21 H -0.272 1.272 22 C 0.121 3.879 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.393 0.607 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.040 0.960 36 H 0.262 0.738 37 H 0.078 0.922 38 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.519 -13.132 8.176 16.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 C 0.288 3.712 4 O -0.405 6.405 5 N -0.381 5.381 6 C 0.019 3.981 7 H 0.108 0.892 8 C -0.154 4.154 9 C -0.167 4.167 10 C 0.063 3.937 11 H 0.047 0.953 12 C -0.194 4.194 13 N -0.322 5.322 14 C -0.389 4.389 15 H 0.110 0.890 16 C -0.171 4.171 17 N -0.550 5.550 18 Si 0.711 3.289 19 H -0.216 1.216 20 H -0.233 1.233 21 H -0.198 1.198 22 C -0.005 4.005 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.226 0.774 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 4.811 -12.351 8.051 15.508 hybrid contribution 0.285 -1.359 -0.691 1.551 sum 5.097 -13.710 7.360 16.374 Atomic orbital electron populations 1.21521 0.93212 1.01153 1.03594 1.21629 0.98641 0.94270 1.03827 1.20769 0.82486 0.91685 0.76296 1.90767 1.55086 1.46373 1.48289 1.46178 1.06916 1.09131 1.75829 1.21731 0.95024 0.81427 0.99930 0.89206 1.21678 0.95651 0.98284 0.99793 1.22054 1.00118 0.95046 0.99524 1.20503 0.87347 0.95148 0.90745 0.95321 1.21809 0.99024 0.96124 1.02479 1.44371 1.16465 1.05400 1.65991 1.18904 1.21777 0.88521 1.09674 0.89026 1.25299 0.97636 0.96655 0.97550 1.69810 1.19796 1.35310 1.30036 0.86963 0.78065 0.84551 0.79324 1.21563 1.23261 1.19757 1.21681 0.98560 0.87066 0.93232 0.92400 0.91981 0.91865 0.89268 0.89308 0.77355 0.92517 0.92229 0.92202 0.91640 0.92351 0.91719 0.94115 0.92828 0.90349 0.96012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.20 37.15 0.34 -1.31 16 2 C -0.14 -1.65 6.42 -27.88 -0.18 -1.83 16 3 C 0.50 8.44 7.80 -10.98 -0.09 8.36 16 4 O -0.53 -11.78 15.65 5.55 0.09 -11.69 16 5 N -0.73 -11.19 5.08 -53.69 -0.27 -11.46 16 6 C 0.12 2.32 2.61 -67.81 -0.18 2.15 16 7 H 0.09 1.95 7.58 -51.93 -0.39 1.56 16 8 C -0.12 -1.74 5.35 -26.68 -0.14 -1.88 16 9 C -0.13 -2.06 5.38 -26.59 -0.14 -2.20 16 10 C 0.17 3.30 3.49 -67.60 -0.24 3.06 16 11 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 12 C -0.14 -2.53 7.94 37.16 0.30 -2.24 16 13 N -0.60 -14.47 2.75 -164.77 -0.45 -14.92 16 14 C -0.26 -7.41 9.04 -15.06 -0.14 -7.54 16 15 H 0.09 2.72 6.39 -52.49 -0.34 2.38 16 16 C 0.03 0.84 5.24 -17.43 -0.09 0.74 16 17 N -0.91 -28.87 13.97 55.49 0.78 -28.09 16 18 Si 0.88 23.63 24.34 -169.99 -4.14 19.49 16 19 H -0.29 -7.79 6.63 56.52 0.37 -7.42 16 20 H -0.30 -8.23 7.11 56.52 0.40 -7.83 16 21 H -0.27 -7.07 6.63 56.52 0.37 -6.69 16 22 C 0.12 2.79 3.77 -3.71 -0.01 2.77 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 25 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.39 4.43 8.60 -40.82 -0.35 4.08 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.14 7.43 -51.93 -0.39 0.75 16 34 H 0.06 1.30 7.64 -51.93 -0.40 0.91 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 37 H 0.08 2.11 4.62 -51.93 -0.24 1.87 16 38 H 0.02 0.49 7.03 -51.93 -0.37 0.13 16 LS Contribution 295.48 15.07 4.45 4.45 Total: -1.00 -34.52 295.48 -6.42 -40.94 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.30 Total: 1.20 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -0.57 Total: 0.09 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.05 Total: -54.47 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -4.14 Total: 19.49 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.52 -6.42 -40.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071279463.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.562 kcal (2) G-P(sol) polarization free energy of solvation -34.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds