Wall clock time and date at job start Sun Mar 29 2020 22:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 O 1.21282 * 120.00025 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00035 * 179.97438 * 3 2 1 6 6 C 1.46496 * 119.99846 * 180.02562 * 5 3 2 7 7 H 1.09002 * 109.47161 * 35.00405 * 6 5 3 8 8 C 1.52995 * 109.47348 * 275.00074 * 6 5 3 9 9 C 1.52997 * 109.47456 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47143 * 60.00425 * 9 8 6 11 11 C 1.53002 * 109.46660 * 299.99806 * 10 9 8 12 12 C 1.52997 * 109.47184 * 60.00219 * 11 10 9 13 13 H 1.09004 * 109.47401 * 59.99937 * 12 11 10 14 14 N 1.46501 * 109.47599 * 179.97438 * 12 11 10 15 15 C 1.36939 * 119.99902 * 275.00591 * 14 12 11 16 16 H 1.07994 * 120.00155 * 359.97438 * 15 14 12 17 17 C 1.38814 * 120.00112 * 179.97438 * 15 14 12 18 18 N 1.31626 * 119.99761 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00340 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46873 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47145 * 119.99526 * 19 17 15 22 22 H 1.48501 * 109.46996 * 239.99734 * 19 17 15 23 23 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 24 24 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 27 27 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 28 28 H 0.96998 * 119.99962 * 0.02562 * 5 3 2 29 29 H 1.09002 * 109.47259 * 300.00271 * 8 6 5 30 30 H 1.09003 * 109.47231 * 60.00299 * 8 6 5 31 31 H 1.09002 * 109.47050 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.46984 * 300.00288 * 9 8 6 33 33 H 1.08997 * 109.47688 * 59.99449 * 10 9 8 34 34 H 1.09000 * 109.47137 * 180.02562 * 10 9 8 35 35 H 1.09003 * 109.47294 * 179.97438 * 11 10 9 36 36 H 1.09002 * 109.47469 * 300.00137 * 11 10 9 37 37 H 0.96996 * 120.00201 * 94.99168 * 14 12 11 38 38 H 0.96992 * 119.99825 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6671 0.0005 6 6 3.8458 3.0482 0.0011 7 1 3.1730 3.6712 0.5906 8 6 3.8977 3.5714 -1.4357 9 6 4.4083 5.0137 -1.4352 10 6 5.8108 5.0580 -0.8254 11 6 5.7589 4.5349 0.6115 12 6 5.2483 3.0926 0.6110 13 1 5.9207 2.4693 0.0214 14 7 5.1991 2.5914 1.9867 15 6 6.3209 2.0554 2.5606 16 1 7.2418 2.0018 1.9990 17 6 6.2745 1.5809 3.8643 18 7 5.1523 1.6467 4.5490 19 14 7.8046 0.8491 4.6471 20 1 8.9261 0.8905 3.6746 21 1 8.1666 1.6340 5.8545 22 1 7.5372 -0.5594 5.0340 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.9878 0.9298 0.0005 29 1 4.5704 2.9485 -2.0251 30 1 2.8986 3.5395 -1.8704 31 1 4.4448 5.3866 -2.4588 32 1 3.7359 5.6369 -0.8456 33 1 6.4832 4.4348 -1.4148 34 1 6.1744 6.0856 -0.8246 35 1 6.7581 4.5660 1.0458 36 1 5.0865 5.1581 1.2010 37 1 4.3720 2.6394 2.4911 38 1 5.1199 1.3156 5.4601 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085109298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:10 Heat of formation + Delta-G solvation = -55.600687 kcal Electronic energy + Delta-G solvation = -17988.156347 eV Core-core repulsion = 15250.524062 eV Total energy + Delta-G solvation = -2737.632285 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.65483 -37.82178 -34.03558 -33.63924 -32.51427 -31.13929 -29.25430 -27.69157 -24.31675 -23.69070 -21.76391 -21.03485 -19.95605 -19.27347 -17.23202 -16.63083 -15.89417 -15.27089 -14.90971 -14.11748 -13.99690 -13.68256 -13.46567 -13.00822 -12.97656 -12.75505 -12.23548 -12.04617 -11.90952 -11.56333 -11.08328 -10.99692 -10.93448 -10.80813 -10.74356 -10.54495 -10.31334 -10.14410 -9.74719 -9.63541 -9.37281 -8.92522 -8.49876 -6.99328 -5.79396 -3.09004 3.08305 3.39786 3.45721 3.48046 3.66234 4.54367 5.02233 5.08667 5.17120 5.23625 5.28916 5.37399 5.52307 5.54752 5.72736 5.76821 5.85437 5.91021 5.93348 5.98117 5.99715 6.10581 6.13040 6.33203 6.36055 6.46890 6.50642 6.54751 6.59926 6.87967 6.95238 7.12538 7.66677 8.01717 8.37916 8.69831 9.49621 10.06593 10.41879 11.42627 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.016839 B = 0.008583 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.398998 B = 3261.633189 C = 4630.110765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.146 4.146 3 C 0.512 3.488 4 O -0.554 6.554 5 N -0.709 5.709 6 C 0.140 3.860 7 H 0.082 0.918 8 C -0.123 4.123 9 C -0.114 4.114 10 C -0.119 4.119 11 C -0.133 4.133 12 C 0.173 3.827 13 H 0.050 0.950 14 N -0.722 5.722 15 C -0.240 4.240 16 H 0.070 0.930 17 C -0.012 4.012 18 N -0.929 5.929 19 Si 0.905 3.095 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.402 0.598 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.385 0.615 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.174 -0.088 -12.203 12.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.186 4.186 3 C 0.298 3.702 4 O -0.433 6.433 5 N -0.359 5.359 6 C 0.035 3.965 7 H 0.100 0.900 8 C -0.162 4.162 9 C -0.152 4.152 10 C -0.157 4.157 11 C -0.174 4.174 12 C 0.062 3.938 13 H 0.068 0.932 14 N -0.362 5.362 15 C -0.371 4.371 16 H 0.088 0.912 17 C -0.208 4.208 18 N -0.577 5.577 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.220 1.220 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.113 0.887 27 H 0.105 0.895 28 H 0.237 0.763 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.219 0.781 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.564 0.476 -12.134 12.655 hybrid contribution 0.988 -0.730 0.800 1.466 sum -2.577 -0.254 -11.334 11.626 Atomic orbital electron populations 1.21492 0.93474 1.01047 1.03111 1.21621 0.98249 0.94516 1.04224 1.20660 0.82429 0.91516 0.75561 1.90649 1.55495 1.46602 1.50565 1.45946 1.06762 1.09115 1.74032 1.21266 0.97045 0.82585 0.95646 0.89965 1.21864 1.00997 0.96401 0.96967 1.21472 0.97137 0.96347 1.00239 1.21578 0.96345 1.00384 0.97419 1.22221 1.02070 0.98476 0.94659 1.20464 0.92164 0.93315 0.87818 0.93238 1.42424 1.12065 1.72274 1.09475 1.19255 0.90198 1.31856 0.95768 0.91159 1.24745 0.96979 1.02072 0.97032 1.69686 1.24967 1.52276 1.10790 0.86156 0.82437 0.78541 0.79259 1.20604 1.21921 1.21951 0.91990 0.92359 0.92525 0.88722 0.89474 0.76316 0.92136 0.92028 0.92447 0.92001 0.92409 0.92708 0.91647 0.92478 0.78148 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.20 37.16 0.34 -1.31 16 2 C -0.15 -1.89 6.42 -27.88 -0.18 -2.07 16 3 C 0.51 8.64 7.79 -10.99 -0.09 8.55 16 4 O -0.55 -11.18 15.64 5.56 0.09 -11.10 16 5 N -0.71 -11.71 4.91 -53.81 -0.26 -11.98 16 6 C 0.14 2.42 1.98 -67.93 -0.13 2.29 16 7 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 8 C -0.12 -1.79 5.49 -26.73 -0.15 -1.94 16 9 C -0.11 -1.52 5.92 -26.73 -0.16 -1.68 16 10 C -0.12 -1.65 5.92 -26.73 -0.16 -1.81 16 11 C -0.13 -2.34 5.50 -26.73 -0.15 -2.48 16 12 C 0.17 3.29 2.29 -67.93 -0.16 3.13 16 13 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 14 N -0.72 -17.33 4.95 -53.42 -0.26 -17.59 16 15 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 16 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 19 Si 0.90 21.92 29.55 -169.99 -5.02 16.89 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 24 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.40 6.23 8.60 -40.82 -0.35 5.88 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.38 10.23 7.80 -40.82 -0.32 9.91 16 38 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 309.35 15.07 4.66 4.66 Total: -1.00 -30.51 309.35 -7.67 -38.18 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -6.52 Total: 12.08 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -1.07 Total: -4.26 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.20 Total: -56.46 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.51 -7.67 -38.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085109298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.419 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds