Wall clock time and date at job start Sun Mar 29 2020 22:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 O 1.21282 * 120.00025 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00035 * 179.97438 * 3 2 1 6 6 C 1.46496 * 119.99846 * 180.02562 * 5 3 2 7 7 H 1.09002 * 109.47161 * 35.00405 * 6 5 3 8 8 C 1.52995 * 109.47348 * 275.00074 * 6 5 3 9 9 C 1.52997 * 109.47456 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47143 * 60.00425 * 9 8 6 11 11 C 1.53002 * 109.46660 * 299.99806 * 10 9 8 12 12 C 1.52997 * 109.47184 * 60.00219 * 11 10 9 13 13 H 1.09004 * 109.47401 * 59.99937 * 12 11 10 14 14 N 1.46501 * 109.47599 * 179.97438 * 12 11 10 15 15 C 1.36939 * 119.99902 * 275.00591 * 14 12 11 16 16 H 1.07994 * 120.00155 * 359.97438 * 15 14 12 17 17 C 1.38814 * 120.00112 * 179.97438 * 15 14 12 18 18 N 1.31626 * 119.99761 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00340 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46873 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47145 * 119.99526 * 19 17 15 22 22 H 1.48501 * 109.46996 * 239.99734 * 19 17 15 23 23 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 24 24 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 27 27 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 28 28 H 0.96998 * 119.99962 * 0.02562 * 5 3 2 29 29 H 1.09002 * 109.47259 * 300.00271 * 8 6 5 30 30 H 1.09003 * 109.47231 * 60.00299 * 8 6 5 31 31 H 1.09002 * 109.47050 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.46984 * 300.00288 * 9 8 6 33 33 H 1.08997 * 109.47688 * 59.99449 * 10 9 8 34 34 H 1.09000 * 109.47137 * 180.02562 * 10 9 8 35 35 H 1.09003 * 109.47294 * 179.97438 * 11 10 9 36 36 H 1.09002 * 109.47469 * 300.00137 * 11 10 9 37 37 H 0.96996 * 120.00201 * 94.99168 * 14 12 11 38 38 H 0.96992 * 119.99825 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6671 0.0005 6 6 3.8458 3.0482 0.0011 7 1 3.1730 3.6712 0.5906 8 6 3.8977 3.5714 -1.4357 9 6 4.4083 5.0137 -1.4352 10 6 5.8108 5.0580 -0.8254 11 6 5.7589 4.5349 0.6115 12 6 5.2483 3.0926 0.6110 13 1 5.9207 2.4693 0.0214 14 7 5.1991 2.5914 1.9867 15 6 6.3209 2.0554 2.5606 16 1 7.2418 2.0018 1.9990 17 6 6.2745 1.5809 3.8643 18 7 5.1523 1.6467 4.5490 19 14 7.8046 0.8491 4.6471 20 1 8.9261 0.8905 3.6746 21 1 8.1666 1.6340 5.8545 22 1 7.5372 -0.5594 5.0340 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.9878 0.9298 0.0005 29 1 4.5704 2.9485 -2.0251 30 1 2.8986 3.5395 -1.8704 31 1 4.4448 5.3866 -2.4588 32 1 3.7359 5.6369 -0.8456 33 1 6.4832 4.4348 -1.4148 34 1 6.1744 6.0856 -0.8246 35 1 6.7581 4.5660 1.0458 36 1 5.0865 5.1581 1.2010 37 1 4.3720 2.6394 2.4911 38 1 5.1199 1.3156 5.4601 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085109298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:09 Heat of formation + Delta-G solvation = -76.005817 kcal Electronic energy + Delta-G solvation = -17989.041179 eV Core-core repulsion = 15250.524062 eV Total energy + Delta-G solvation = -2738.517118 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.03472 -39.21932 -35.82151 -35.04211 -33.62143 -32.98954 -30.57933 -29.31810 -25.77410 -25.29094 -23.09289 -22.45015 -21.31110 -20.61808 -19.15061 -18.00466 -17.32806 -16.66012 -16.47263 -15.71427 -15.46591 -15.12387 -14.73963 -14.62899 -14.30828 -14.12060 -13.63604 -13.49611 -13.04436 -12.91926 -12.84545 -12.60765 -12.20474 -12.17002 -12.04065 -12.00717 -11.98453 -11.64618 -11.43916 -11.11643 -10.99127 -10.65896 -9.88897 -8.99632 -7.91569 -5.20628 1.48065 1.49124 1.58491 1.75161 2.37992 2.56843 3.41806 3.68992 3.80669 3.91103 4.12881 4.25530 4.27498 4.28525 4.34151 4.44191 4.50578 4.59216 4.70068 4.77256 4.95475 4.99033 5.01996 5.08503 5.19022 5.24165 5.29413 5.30811 5.34489 5.47138 5.53456 5.59075 5.72321 6.28411 6.68942 7.34860 7.37298 8.08727 8.33089 9.31697 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.016839 B = 0.008583 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.398998 B = 3261.633189 C = 4630.110765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.140 4.140 3 C 0.503 3.497 4 O -0.594 6.594 5 N -0.708 5.708 6 C 0.146 3.854 7 H 0.047 0.953 8 C -0.113 4.113 9 C -0.111 4.111 10 C -0.109 4.109 11 C -0.129 4.129 12 C 0.172 3.828 13 H 0.059 0.941 14 N -0.732 5.732 15 C -0.230 4.230 16 H 0.080 0.920 17 C -0.076 4.076 18 N -0.970 5.970 19 Si 0.969 3.031 20 H -0.264 1.264 21 H -0.300 1.300 22 H -0.295 1.295 23 H 0.038 0.962 24 H 0.053 0.947 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.121 0.879 28 H 0.409 0.591 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.038 0.962 37 H 0.368 0.632 38 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.977 -0.680 -14.357 14.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.179 4.179 3 C 0.291 3.709 4 O -0.475 6.475 5 N -0.357 5.357 6 C 0.040 3.960 7 H 0.065 0.935 8 C -0.152 4.152 9 C -0.149 4.149 10 C -0.147 4.147 11 C -0.170 4.170 12 C 0.064 3.936 13 H 0.077 0.923 14 N -0.371 5.371 15 C -0.362 4.362 16 H 0.098 0.902 17 C -0.268 4.268 18 N -0.621 5.621 19 Si 0.799 3.201 20 H -0.188 1.188 21 H -0.228 1.228 22 H -0.223 1.223 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.105 0.895 26 H 0.116 0.884 27 H 0.139 0.861 28 H 0.244 0.756 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.199 0.801 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.328 -0.112 -14.347 14.535 hybrid contribution 0.599 -0.503 1.421 1.623 sum -1.729 -0.615 -12.926 13.055 Atomic orbital electron populations 1.21495 0.93085 1.02561 1.01774 1.21678 0.98513 0.91804 1.05917 1.21441 0.82061 0.92915 0.74477 1.90628 1.56329 1.48201 1.52360 1.45981 1.07057 1.08970 1.73675 1.21124 0.94932 0.82848 0.97051 0.93456 1.21792 1.01299 0.97524 0.94634 1.21482 0.96347 0.95282 1.01799 1.21512 0.97131 1.01554 0.94517 1.22101 1.00414 0.97148 0.97324 1.20673 0.93500 0.94060 0.85410 0.92292 1.42595 1.10711 1.72520 1.11239 1.19630 0.90958 1.29881 0.95701 0.90230 1.25509 0.99610 1.03718 0.97947 1.69852 1.27123 1.54366 1.10769 0.85128 0.79690 0.77131 0.78127 1.18784 1.22820 1.22285 0.94289 0.92776 0.89510 0.88410 0.86081 0.75591 0.90202 0.92601 0.89416 0.93057 0.90843 0.90879 0.93151 0.94286 0.80114 0.94342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.20 71.98 0.66 -2.44 16 2 C -0.14 -3.40 6.42 29.85 0.19 -3.21 16 3 C 0.50 16.90 7.79 87.66 0.68 17.58 16 4 O -0.59 -24.48 15.64 -3.04 -0.05 -24.52 16 5 N -0.71 -23.08 4.91 -442.54 -2.17 -25.25 16 6 C 0.15 5.04 1.98 44.99 0.09 5.13 16 7 H 0.05 1.97 7.58 -2.39 -0.02 1.95 16 8 C -0.11 -3.08 5.49 30.59 0.17 -2.91 16 9 C -0.11 -2.67 5.92 30.59 0.18 -2.49 16 10 C -0.11 -2.72 5.92 30.59 0.18 -2.54 16 11 C -0.13 -4.44 5.50 30.59 0.17 -4.27 16 12 C 0.17 6.45 2.29 44.99 0.10 6.55 16 13 H 0.06 2.12 8.08 -2.38 -0.02 2.10 16 14 N -0.73 -35.54 4.95 -322.93 -1.60 -37.14 16 15 C -0.23 -12.17 9.93 84.03 0.83 -11.33 16 16 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 17 C -0.08 -4.24 5.50 84.86 0.47 -3.78 16 18 N -0.97 -59.02 13.06 21.65 0.28 -58.73 16 19 Si 0.97 45.23 29.55 68.60 2.03 47.25 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 22 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 23 H 0.04 1.08 8.10 -2.39 -0.02 1.06 16 24 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 25 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.41 12.23 8.60 -92.71 -0.80 11.43 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.37 20.22 7.80 -92.71 -0.72 19.50 16 38 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -67.10 309.35 1.74 -65.36 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: -0.48 Total: 36.74 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 3.73 Total: -3.71 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -3.49 Total: -121.12 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.05 Total: -24.52 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -67.10 1.74 -65.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085109298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.646 kcal (2) G-P(sol) polarization free energy of solvation -67.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds