Wall clock time and date at job start Sun Mar 29 2020 23:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21281 * 119.99818 * 2 1 4 4 N 1.34771 * 120.00077 * 179.97438 * 2 1 3 5 5 C 1.48147 * 127.83902 * 0.02823 * 4 2 1 6 6 C 1.54391 * 104.61779 * 140.40856 * 5 4 2 7 7 H 1.08998 * 110.43022 * 142.77588 * 6 5 4 8 8 C 1.52994 * 110.34620 * 264.99399 * 6 5 4 9 9 C 1.54289 * 104.95916 * 23.87136 * 6 5 4 10 10 H 1.09008 * 110.33452 * 241.02166 * 9 6 5 11 11 C 1.52992 * 110.34853 * 118.86905 * 9 6 5 12 12 C 1.52997 * 109.47482 * 174.99763 * 11 9 6 13 13 N 1.46505 * 109.47212 * 179.97438 * 12 11 9 14 14 C 1.36936 * 119.99992 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99834 * 0.02562 * 14 13 12 16 16 C 1.38801 * 120.00093 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00145 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00180 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47586 * 89.99558 * 18 16 14 20 20 H 1.48505 * 109.47293 * 210.00502 * 18 16 14 21 21 H 1.48505 * 109.46772 * 329.99807 * 18 16 14 22 22 C 1.48143 * 127.83473 * 180.02562 * 4 2 1 23 23 H 1.09003 * 109.46998 * 269.99824 * 1 2 3 24 24 H 1.08999 * 109.47806 * 29.99870 * 1 2 3 25 25 H 1.09005 * 109.46995 * 149.99895 * 1 2 3 26 26 H 1.08998 * 110.40451 * 21.62847 * 5 4 2 27 27 H 1.08997 * 110.50764 * 259.24681 * 5 4 2 28 28 H 1.08999 * 109.47189 * 175.53440 * 8 6 5 29 29 H 1.08996 * 109.47320 * 295.53681 * 8 6 5 30 30 H 1.09002 * 109.47081 * 55.54210 * 8 6 5 31 31 H 1.09002 * 109.47103 * 54.99516 * 11 9 6 32 32 H 1.08998 * 109.46862 * 295.00328 * 11 9 6 33 33 H 1.09002 * 109.47153 * 59.99783 * 12 11 9 34 34 H 1.09001 * 109.46832 * 299.99974 * 12 11 9 35 35 H 0.96996 * 119.99606 * 0.02562 * 13 12 11 36 36 H 0.97010 * 119.99864 * 180.02562 * 17 16 14 37 37 H 1.09003 * 110.40820 * 100.80883 * 22 4 2 38 38 H 1.08994 * 110.41558 * 338.37396 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.6221 -2.5392 0.0006 6 6 2.5417 -3.3345 -0.9510 7 1 2.6894 -4.3481 -0.5784 8 6 1.9473 -3.3682 -2.3604 9 6 3.8779 -2.5630 -0.9506 10 1 4.1116 -2.2097 -1.9549 11 6 5.0059 -3.4531 -0.4250 12 6 6.3394 -2.7134 -0.5495 13 7 7.4194 -3.5654 -0.0456 14 6 8.7114 -3.1119 -0.0571 15 1 8.9341 -2.1258 -0.4373 16 6 9.7347 -3.9193 0.4197 17 7 10.9765 -3.4832 0.4091 18 14 9.3495 -5.6251 1.0766 19 1 9.4238 -6.6108 -0.0315 20 1 10.3357 -5.9855 2.1268 21 1 7.9826 -5.6350 1.6570 22 6 3.6485 -1.3691 0.0011 23 1 -0.3633 0.0000 1.0277 24 1 -0.3635 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 0.5994 -2.5330 -0.3764 27 1 1.6540 -2.9645 1.0036 28 1 2.6440 -3.8634 -3.0367 29 1 1.0051 -3.9158 -2.3443 30 1 1.7696 -2.3492 -2.7042 31 1 5.0448 -4.3729 -1.0085 32 1 4.8205 -3.6944 0.6216 33 1 6.3005 -1.7935 0.0341 34 1 6.5246 -2.4721 -1.5962 35 1 7.2193 -4.4511 0.2955 36 1 11.6917 -4.0477 0.7421 37 1 3.9985 -1.6104 1.0048 38 1 4.1547 -0.4803 -0.3753 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103799429.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:48 Heat of formation + Delta-G solvation = -57.769844 kcal Electronic energy + Delta-G solvation = -17354.182753 eV Core-core repulsion = 14616.456407 eV Total energy + Delta-G solvation = -2737.726347 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.16262 -39.12890 -37.02762 -34.59646 -33.50349 -32.23273 -30.92967 -28.27615 -27.32953 -25.65436 -23.89731 -22.27857 -20.90361 -20.25158 -19.65699 -18.02074 -17.02094 -16.65966 -16.56858 -15.86853 -15.71707 -15.38920 -14.79988 -14.51025 -14.35996 -14.18964 -13.73132 -13.45339 -13.42437 -13.02023 -12.96337 -12.86764 -12.73712 -12.41679 -12.23426 -12.04469 -11.85483 -11.59750 -11.52479 -11.30061 -10.97997 -10.94679 -9.76750 -9.32592 -8.04619 -5.39540 1.37255 1.42892 1.50334 1.59597 2.01041 2.48197 3.26446 3.38195 3.59536 3.63905 3.87098 3.98726 4.21202 4.30111 4.39176 4.46483 4.50036 4.54487 4.63063 4.63730 4.71843 4.78821 4.90666 4.93116 4.99402 5.06857 5.15290 5.20489 5.28875 5.35655 5.36440 5.56034 5.72915 6.19334 6.59568 7.06257 7.12057 7.81232 8.02908 9.17255 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035970 B = 0.004761 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.240310 B = 5879.813434 C = 6293.253467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.516 3.484 3 O -0.612 6.612 4 N -0.623 5.623 5 C 0.102 3.898 6 C -0.098 4.098 7 H 0.107 0.893 8 C -0.140 4.140 9 C -0.085 4.085 10 H 0.074 0.926 11 C -0.104 4.104 12 C 0.149 3.851 13 N -0.758 5.758 14 C -0.244 4.244 15 H 0.048 0.952 16 C -0.067 4.067 17 N -0.986 5.986 18 Si 0.964 3.036 19 H -0.274 1.274 20 H -0.295 1.295 21 H -0.246 1.246 22 C 0.102 3.898 23 H 0.111 0.889 24 H 0.093 0.907 25 H 0.109 0.891 26 H 0.112 0.888 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.015 0.985 34 H 0.017 0.983 35 H 0.369 0.631 36 H 0.259 0.741 37 H 0.071 0.929 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.339 -3.561 -1.834 28.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.308 3.692 3 O -0.494 6.494 4 N -0.356 5.356 5 C -0.020 4.020 6 C -0.117 4.117 7 H 0.125 0.875 8 C -0.197 4.197 9 C -0.105 4.105 10 H 0.093 0.907 11 C -0.142 4.142 12 C 0.023 3.977 13 N -0.405 5.405 14 C -0.375 4.375 15 H 0.066 0.934 16 C -0.258 4.258 17 N -0.637 5.637 18 Si 0.790 3.210 19 H -0.200 1.200 20 H -0.222 1.222 21 H -0.171 1.171 22 C -0.021 4.021 23 H 0.130 0.870 24 H 0.112 0.888 25 H 0.128 0.872 26 H 0.130 0.870 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.033 0.967 34 H 0.035 0.965 35 H 0.202 0.798 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -27.962 -2.749 -1.879 28.160 hybrid contribution 1.069 -0.347 0.352 1.177 sum -26.894 -3.096 -1.528 27.114 Atomic orbital electron populations 1.21903 0.87232 1.06258 1.06286 1.21464 0.92244 0.81166 0.74336 1.90713 1.72365 1.32869 1.53494 1.49246 1.07507 1.06996 1.71856 1.22810 0.99168 0.79189 1.00794 1.22214 0.92599 0.99958 0.96979 0.87484 1.21826 1.01582 1.01528 0.94771 1.22037 0.95314 0.94335 0.98793 0.90727 1.21727 0.91697 0.98594 1.02229 1.20853 0.87500 0.93326 0.95985 1.42694 1.03328 1.17466 1.76966 1.19049 0.84369 0.99881 1.34196 0.93368 1.25639 0.94709 1.03353 1.02106 1.69917 1.00199 1.39237 1.54317 0.85283 0.78334 0.79328 0.78067 1.19980 1.22161 1.17054 1.22399 0.81553 0.98175 0.99948 0.87046 0.88834 0.87210 0.86968 0.89333 0.92620 0.90118 0.93756 0.90078 0.90698 0.96709 0.96456 0.79755 0.93218 0.91084 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.96 71.24 0.71 -1.16 16 2 C 0.52 12.42 8.02 87.66 0.70 13.12 16 3 O -0.61 -21.95 17.37 -3.03 -0.05 -22.01 16 4 N -0.62 -13.18 3.32 -807.95 -2.68 -15.86 16 5 C 0.10 1.21 6.46 86.53 0.56 1.77 16 6 C -0.10 -1.35 3.31 -9.89 -0.03 -1.38 16 7 H 0.11 1.19 7.71 -2.39 -0.02 1.17 16 8 C -0.14 -1.67 8.90 71.98 0.64 -1.03 16 9 C -0.08 -1.85 2.71 -9.88 -0.03 -1.88 16 10 H 0.07 1.79 7.71 -2.38 -0.02 1.77 16 11 C -0.10 -2.73 4.51 30.59 0.14 -2.60 16 12 C 0.15 5.77 6.13 86.38 0.53 6.30 16 13 N -0.76 -36.24 5.41 -343.45 -1.86 -38.09 16 14 C -0.24 -14.51 10.47 84.03 0.88 -13.63 16 15 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 16 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 17 N -0.99 -64.76 13.97 21.65 0.30 -64.46 16 18 Si 0.96 45.41 27.74 68.60 1.90 47.32 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 21 H -0.25 -10.24 6.52 99.48 0.65 -9.59 16 22 C 0.10 2.66 5.87 86.54 0.51 3.16 16 23 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.11 0.61 6.52 -2.38 -0.02 0.60 16 26 H 0.11 0.65 6.23 -2.39 -0.01 0.64 16 27 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 1.85 7.98 -2.39 -0.02 1.83 16 33 H 0.01 0.61 7.59 -2.39 -0.02 0.59 16 34 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.37 16.22 5.53 -92.71 -0.51 15.71 16 36 H 0.26 16.07 8.31 -92.70 -0.77 15.30 16 37 H 0.07 1.89 7.75 -2.39 -0.02 1.87 16 38 H 0.05 1.64 7.88 -2.39 -0.02 1.62 16 Total: -1.00 -80.13 306.78 3.15 -76.98 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.46 Total: 17.00 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 5.07 Total: -0.88 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -4.23 Total: -118.41 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.05 Total: -22.01 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.90 Total: 47.32 kcal Total: -80.13 3.15 -76.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103799429.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.213 kcal (2) G-P(sol) polarization free energy of solvation -80.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds