Wall clock time and date at job start Sun Mar 29 2020 22:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47107 * 2 1 4 4 O 1.21275 * 120.00224 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99768 * 179.97438 * 3 2 1 6 6 C 1.47026 * 125.64391 * 180.02562 * 5 3 2 7 7 C 1.54330 * 107.26840 * 178.97562 * 6 5 3 8 8 H 1.08998 * 110.71700 * 96.16950 * 7 6 5 9 9 C 1.52994 * 110.71826 * 219.44364 * 7 6 5 10 10 N 1.46497 * 109.47309 * 293.54328 * 9 7 6 11 11 C 1.36941 * 120.00367 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99535 * 0.02562 * 11 10 9 13 13 C 1.38807 * 120.00162 * 180.02562 * 11 10 9 14 14 N 1.31621 * 120.00137 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00026 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47009 * 89.99937 * 15 13 11 17 17 H 1.48498 * 109.47161 * 209.99784 * 15 13 11 18 18 H 1.48496 * 109.46823 * 330.00311 * 15 13 11 19 19 C 1.55155 * 102.94292 * 337.81024 * 7 6 5 20 20 H 1.09001 * 111.00015 * 277.42463 * 19 7 6 21 21 C 1.52994 * 111.03735 * 153.59095 * 19 7 6 22 22 C 1.47420 * 125.65180 * 0.04091 * 5 3 2 23 23 H 1.08996 * 109.47489 * 59.99812 * 1 2 3 24 24 H 1.08997 * 109.47334 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47282 * 300.00073 * 1 2 3 26 26 H 1.09001 * 109.47282 * 239.99927 * 2 1 3 27 27 H 1.09004 * 109.47328 * 119.99901 * 2 1 3 28 28 H 1.08998 * 109.88351 * 298.39161 * 6 5 3 29 29 H 1.08998 * 109.88379 * 59.55951 * 6 5 3 30 30 H 1.08997 * 109.47343 * 53.54751 * 9 7 6 31 31 H 1.09004 * 109.47006 * 173.54978 * 9 7 6 32 32 H 0.96998 * 119.99925 * 0.02562 * 10 9 7 33 33 H 0.97007 * 119.99925 * 180.02562 * 14 13 11 34 34 H 1.09002 * 109.47359 * 306.32478 * 21 19 7 35 35 H 1.08995 * 109.47577 * 66.32915 * 21 19 7 36 36 H 1.09006 * 109.47268 * 186.32862 * 21 19 7 37 37 H 1.08997 * 110.36858 * 322.93289 * 22 5 3 38 38 H 1.08999 * 110.36307 * 85.25503 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.9815 2.9983 0.0011 7 6 5.5101 2.7876 0.0279 8 1 5.9237 2.8361 -0.9794 9 6 6.1821 3.8151 0.9408 10 7 6.0301 5.1535 0.3648 11 6 6.5556 6.2407 1.0107 12 1 7.0824 6.1113 1.9446 13 6 6.4111 7.5088 0.4652 14 7 5.7686 7.6665 -0.6727 15 14 7.1285 8.9918 1.3460 16 1 8.5194 9.2201 0.8785 17 1 6.3036 10.1905 1.0494 18 1 7.1328 8.7436 2.8100 19 6 5.6536 1.3574 0.6119 20 1 5.5955 1.3722 1.7003 21 6 6.9540 0.7010 0.1440 22 6 4.4210 0.6463 0.0003 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.6979 3.5411 -0.9005 29 1 3.6683 3.5541 0.8849 30 1 5.7143 3.7878 1.9249 31 1 7.2420 3.5787 1.0356 32 1 5.5573 5.2696 -0.4741 33 1 5.6679 8.5528 -1.0541 34 1 7.0082 0.7370 -0.9441 35 1 7.8039 1.2356 0.5680 36 1 6.9763 -0.3375 0.4747 37 1 4.1300 -0.2050 0.6156 38 1 4.6365 0.3233 -1.0182 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105737163.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:23 Heat of formation + Delta-G solvation = -62.491925 kcal Electronic energy + Delta-G solvation = -17488.248986 eV Core-core repulsion = 14750.317875 eV Total energy + Delta-G solvation = -2737.931111 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.23504 -39.18132 -36.47146 -34.33175 -33.54998 -33.05858 -30.68687 -27.58966 -27.18735 -25.43067 -24.23290 -22.32993 -21.14854 -20.16835 -19.16653 -18.02868 -17.45814 -16.71128 -16.59099 -15.78385 -15.41732 -15.22975 -14.96293 -14.74612 -14.08864 -13.83405 -13.66138 -13.37431 -13.29099 -13.09398 -12.94777 -12.75783 -12.55948 -12.47285 -12.15395 -12.04486 -11.96785 -11.84369 -11.56300 -11.34116 -10.97951 -10.88783 -9.70372 -9.03122 -7.97213 -5.26902 1.45240 1.47830 1.56198 1.61189 1.99264 2.54185 3.35157 3.40890 3.52262 3.74569 3.81822 4.14071 4.21787 4.24087 4.28886 4.43405 4.50219 4.55333 4.63807 4.74092 4.79056 4.87200 4.91308 4.97131 5.03579 5.05858 5.17407 5.20286 5.26478 5.36767 5.37934 5.46652 5.54916 6.24570 6.55398 7.14654 7.30605 8.06175 8.28505 9.26567 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028077 B = 0.005372 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.011679 B = 5210.870531 C = 5987.509999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.507 3.493 4 O -0.601 6.601 5 N -0.620 5.620 6 C 0.121 3.879 7 C -0.090 4.090 8 H 0.084 0.916 9 C 0.164 3.836 10 N -0.748 5.748 11 C -0.248 4.248 12 H 0.078 0.922 13 C -0.077 4.077 14 N -0.972 5.972 15 Si 0.976 3.024 16 H -0.283 1.283 17 H -0.297 1.297 18 H -0.269 1.269 19 C -0.090 4.090 20 H 0.088 0.912 21 C -0.134 4.134 22 C 0.104 3.896 23 H 0.041 0.959 24 H 0.094 0.906 25 H 0.041 0.959 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.015 0.985 31 H 0.035 0.965 32 H 0.372 0.628 33 H 0.251 0.749 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 -22.897 1.642 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.298 3.702 4 O -0.483 6.483 5 N -0.353 5.353 6 C -0.003 4.003 7 C -0.110 4.110 8 H 0.102 0.898 9 C 0.038 3.962 10 N -0.390 5.390 11 C -0.379 4.379 12 H 0.096 0.904 13 C -0.269 4.269 14 N -0.622 5.622 15 Si 0.804 3.196 16 H -0.210 1.210 17 H -0.224 1.224 18 H -0.194 1.194 19 C -0.109 4.109 20 H 0.106 0.894 21 C -0.191 4.191 22 C -0.018 4.018 23 H 0.060 0.940 24 H 0.113 0.887 25 H 0.061 0.939 26 H 0.139 0.861 27 H 0.140 0.860 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.033 0.967 31 H 0.053 0.947 32 H 0.204 0.796 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.220 -22.373 1.794 22.554 hybrid contribution -0.014 1.857 -0.077 1.859 sum -2.234 -20.515 1.716 20.708 Atomic orbital electron populations 1.21559 0.93504 1.02882 1.01595 1.21690 0.97981 0.90049 1.06825 1.21619 0.80106 0.93601 0.74824 1.90695 1.55917 1.49070 1.52591 1.48777 1.05893 1.08210 1.72434 1.21712 0.93698 0.85153 0.99743 1.22383 0.91924 0.96253 1.00423 0.89801 1.20785 0.97488 0.83552 0.94375 1.42616 1.67324 1.02485 1.26622 1.19666 1.27468 0.87013 1.03801 0.90430 1.25616 1.02239 1.00547 0.98466 1.69836 1.48665 1.22333 1.21397 0.85110 0.77467 0.78732 0.78273 1.20957 1.22369 1.19366 1.22377 0.96042 0.91686 1.00807 0.89400 1.21671 0.94507 1.01326 1.01639 1.22728 0.85157 0.91017 1.02849 0.93953 0.88747 0.93931 0.86099 0.85986 0.94480 0.94382 0.96708 0.94672 0.79634 0.94018 0.92052 0.92663 0.89532 0.86829 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.20 71.98 0.66 -1.84 16 2 C -0.13 -2.10 5.43 29.85 0.16 -1.93 16 3 C 0.51 15.07 7.85 87.66 0.69 15.76 16 4 O -0.60 -24.88 16.31 -3.01 -0.05 -24.93 16 5 N -0.62 -17.38 3.33 -811.84 -2.70 -20.08 16 6 C 0.12 4.39 6.15 86.73 0.53 4.93 16 7 C -0.09 -2.83 2.49 -9.61 -0.02 -2.86 16 8 H 0.08 2.67 8.02 -2.39 -0.02 2.65 16 9 C 0.16 6.55 5.58 86.38 0.48 7.04 16 10 N -0.75 -39.29 5.45 -343.47 -1.87 -41.16 16 11 C -0.25 -14.25 9.99 84.03 0.84 -13.41 16 12 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 13 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 14 N -0.97 -61.72 13.06 21.65 0.28 -61.44 16 15 Si 0.98 47.33 29.55 68.60 2.03 49.36 16 16 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 17 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 19 C -0.09 -1.83 3.08 -9.41 -0.03 -1.86 16 20 H 0.09 1.80 8.05 -2.39 -0.02 1.78 16 21 C -0.13 -2.06 9.30 71.98 0.67 -1.39 16 22 C 0.10 1.77 6.16 86.85 0.53 2.31 16 23 H 0.04 0.92 8.10 -2.39 -0.02 0.90 16 24 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.04 0.93 8.10 -2.39 -0.02 0.91 16 26 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.12 1.31 7.85 -2.38 -0.02 1.29 16 28 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.04 1.64 7.77 -2.39 -0.02 1.62 16 30 H 0.01 0.62 8.06 -2.39 -0.02 0.60 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.37 21.03 7.52 -92.71 -0.70 20.33 16 33 H 0.25 15.44 8.31 -92.70 -0.77 14.67 16 34 H 0.06 0.93 8.11 -2.39 -0.02 0.91 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.11 1.13 7.48 -2.39 -0.02 1.11 16 38 H 0.09 1.25 8.04 -2.39 -0.02 1.23 16 Total: -1.00 -77.44 311.81 3.00 -74.44 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.32 Total: 21.14 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 4.98 Total: 2.67 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -4.29 Total: -122.68 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.05 Total: -24.93 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -77.44 3.00 -74.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105737163.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.950 kcal (2) G-P(sol) polarization free energy of solvation -77.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds