Wall clock time and date at job start Sun Mar 29 2020 23:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47315 * 2 1 4 4 C 1.50699 * 109.47030 * 119.99958 * 2 1 3 5 5 H 1.07999 * 120.00803 * 119.99828 * 4 2 1 6 6 C 1.37881 * 119.99889 * 299.99649 * 4 2 1 7 7 N 1.31520 * 120.00186 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00030 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 89.99863 * 8 6 4 10 10 H 1.48503 * 109.47261 * 330.00044 * 8 6 4 11 11 H 1.48500 * 109.47454 * 210.00037 * 8 6 4 12 12 C 1.50698 * 109.46871 * 239.99368 * 2 1 3 13 13 O 1.21285 * 120.00132 * 240.00359 * 12 2 1 14 14 N 1.34773 * 120.00123 * 60.00337 * 12 2 1 15 15 C 1.46500 * 120.00523 * 179.97438 * 14 12 2 16 16 H 1.09001 * 109.49709 * 35.08009 * 15 14 12 17 17 C 1.53116 * 109.50520 * 275.00479 * 15 14 12 18 18 C 1.53120 * 109.15700 * 297.70732 * 17 15 14 19 19 C 1.53028 * 109.28188 * 302.34719 * 18 17 15 20 20 N 1.46846 * 109.52382 * 59.17888 * 19 18 17 21 21 C 1.46846 * 111.20096 * 298.25957 * 20 19 18 22 22 H 1.09009 * 109.46175 * 301.72902 * 21 20 19 23 23 C 1.53001 * 109.46643 * 181.75910 * 21 20 19 24 24 H 1.08995 * 109.47372 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47140 * 300.00483 * 1 2 3 26 26 H 1.09002 * 109.47215 * 60.00272 * 1 2 3 27 27 H 0.96998 * 120.00124 * 180.02562 * 7 6 4 28 28 H 0.97001 * 119.99639 * 0.02562 * 14 12 2 29 29 H 1.08996 * 109.52118 * 57.61613 * 17 15 14 30 30 H 1.08996 * 109.52071 * 177.80488 * 17 15 14 31 31 H 1.08996 * 109.50013 * 62.29483 * 18 17 15 32 32 H 1.09007 * 109.49984 * 182.36827 * 18 17 15 33 33 H 1.08999 * 109.46665 * 179.20032 * 19 18 17 34 34 H 1.09008 * 109.46701 * 299.17643 * 19 18 17 35 35 H 1.00901 * 110.99956 * 174.16304 * 20 19 18 36 36 H 1.09001 * 109.46448 * 299.94414 * 23 21 20 37 37 H 1.09002 * 109.46966 * 59.94336 * 23 21 20 38 38 H 1.08998 * 109.47165 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 2.1380 -0.8589 3.5566 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8728 2.6998 10 1 0.8471 2.1766 1.4919 11 1 0.9759 1.9953 3.9067 12 6 2.0323 -0.7105 -1.2304 13 8 2.7295 -1.6967 -1.1190 14 7 1.7067 -0.2502 -2.4545 15 6 2.1954 -0.9406 -3.6507 16 1 2.2312 -2.0136 -3.4623 17 6 3.5990 -0.4349 -3.9952 18 6 3.5296 1.0607 -4.3159 19 6 2.5499 1.2853 -5.4698 20 7 1.2222 0.7856 -5.0906 21 6 1.2543 -0.6581 -4.8239 22 1 1.6109 -1.1833 -5.7101 23 6 -0.1543 -1.1438 -4.4761 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.9034 -0.5277 4.4376 28 1 1.1494 0.5387 -2.5435 29 1 4.2626 -0.5950 -3.1455 30 1 3.9785 -0.9760 -4.8619 31 1 3.1871 1.6059 -3.4364 32 1 4.5188 1.4176 -4.6029 33 1 2.4875 2.3507 -5.6912 34 1 2.9003 0.7508 -6.3530 35 1 0.5369 1.0076 -5.7972 36 1 -0.5108 -0.6191 -3.5897 37 1 -0.8246 -0.9426 -5.3117 38 1 -0.1306 -2.2155 -4.2786 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121993451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:26 Heat of formation + Delta-G solvation = -44.134007 kcal Electronic energy + Delta-G solvation = -18287.240330 eV Core-core repulsion = 15550.105278 eV Total energy + Delta-G solvation = -2737.135052 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.82133 -37.84459 -33.74767 -33.53243 -32.77097 -31.34147 -29.98395 -26.84789 -25.05210 -23.80407 -22.52179 -21.77060 -19.65314 -18.85002 -16.71080 -16.51988 -15.90514 -15.35913 -14.88821 -14.58626 -14.20233 -14.04244 -13.65580 -13.13743 -12.91957 -12.72622 -12.53209 -12.21553 -11.96887 -11.93691 -11.60275 -11.40429 -10.94625 -10.81822 -10.64467 -10.48063 -10.24386 -10.20866 -9.56515 -9.01935 -8.68630 -8.56274 -8.51091 -8.27093 -5.98953 -3.98396 3.28312 3.36792 3.41116 3.71748 3.84113 4.16468 4.43880 4.68727 4.83400 5.01515 5.08273 5.25685 5.30729 5.32154 5.46990 5.61524 5.70675 5.73964 5.80683 5.88959 6.01652 6.10231 6.19306 6.22794 6.34617 6.38016 6.44652 6.54794 6.82531 6.88453 7.19858 7.24268 7.26716 7.64255 8.34158 8.65409 9.19701 9.28478 9.61049 11.14156 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033574 B = 0.006724 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.779611 B = 4163.258777 C = 4276.183405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.005 4.005 3 H 0.050 0.950 4 C -0.503 4.503 5 H 0.093 0.907 6 C 0.069 3.931 7 N -0.898 5.898 8 Si 0.885 3.115 9 H -0.279 1.279 10 H -0.267 1.267 11 H -0.297 1.297 12 C 0.527 3.473 13 O -0.538 6.538 14 N -0.728 5.728 15 C 0.155 3.845 16 H 0.085 0.915 17 C -0.134 4.134 18 C -0.117 4.117 19 C 0.061 3.939 20 N -0.685 5.685 21 C 0.078 3.922 22 H 0.046 0.954 23 C -0.146 4.146 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.033 0.967 27 H 0.263 0.737 28 H 0.401 0.599 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.027 0.973 35 H 0.341 0.659 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.338 5.025 -19.472 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 H 0.068 0.932 4 C -0.541 4.541 5 H 0.111 0.889 6 C -0.132 4.132 7 N -0.537 5.537 8 Si 0.715 3.285 9 H -0.206 1.206 10 H -0.192 1.192 11 H -0.224 1.224 12 C 0.315 3.685 13 O -0.413 6.413 14 N -0.383 5.383 15 C 0.049 3.951 16 H 0.103 0.897 17 C -0.173 4.173 18 C -0.155 4.155 19 C -0.069 4.069 20 N -0.318 5.318 21 C -0.032 4.032 22 H 0.063 0.937 23 C -0.204 4.204 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.237 0.763 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.159 0.841 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.743 4.454 -18.514 19.239 hybrid contribution -0.779 0.872 -0.757 1.393 sum -3.522 5.326 -19.272 20.302 Atomic orbital electron populations 1.22095 0.97447 1.01347 0.99156 1.19286 0.93131 0.97464 0.92776 0.93242 1.20971 1.31833 1.13977 0.87298 0.88937 1.24990 0.95893 0.96567 0.95792 1.69891 1.45682 1.40283 0.97816 0.86910 0.80681 0.83917 0.76989 1.20612 1.19219 1.22432 1.21230 0.78921 0.84211 0.84138 1.90564 1.37554 1.26547 1.86618 1.46141 1.54947 1.32549 1.04640 1.20788 0.91908 0.97654 0.84781 0.89672 1.21989 0.97855 0.95887 1.01594 1.21553 0.98127 0.96969 0.98849 1.21917 0.89165 0.99565 0.96218 1.60236 1.07628 1.14242 1.49660 1.21752 0.96551 0.88126 0.96802 0.93662 1.21812 0.94864 1.01521 1.02185 0.92501 0.93487 0.94754 0.92673 0.76350 0.90794 0.92129 0.90723 0.91902 0.90922 0.95503 0.84060 0.91126 0.92960 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.57 37.16 0.32 -2.70 16 2 C 0.00 -0.12 2.23 -92.92 -0.21 -0.33 16 3 H 0.05 1.17 7.20 -51.93 -0.37 0.79 16 4 C -0.50 -14.83 8.96 -34.44 -0.31 -15.13 16 5 H 0.09 3.11 7.00 -52.49 -0.37 2.74 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -28.23 13.96 55.43 0.77 -27.45 16 8 Si 0.88 21.80 24.37 -169.99 -4.14 17.65 16 9 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 10 H -0.27 -6.15 6.53 56.52 0.37 -5.78 16 11 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 12 C 0.53 11.69 7.11 -10.99 -0.08 11.61 16 13 O -0.54 -14.02 15.12 5.55 0.08 -13.94 16 14 N -0.73 -12.21 3.60 -53.73 -0.19 -12.40 16 15 C 0.15 2.24 2.26 -67.85 -0.15 2.09 16 16 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 17 C -0.13 -1.83 5.67 -26.61 -0.15 -1.98 16 18 C -0.12 -1.37 5.93 -26.65 -0.16 -1.53 16 19 C 0.06 0.58 6.55 -3.84 -0.03 0.55 16 20 N -0.69 -6.76 5.98 -106.76 -0.64 -7.40 16 21 C 0.08 0.85 2.74 -67.72 -0.19 0.67 16 22 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 23 C -0.15 -1.54 9.27 37.16 0.34 -1.20 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 26 H 0.03 0.58 7.57 -51.93 -0.39 0.19 16 27 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 28 H 0.40 6.15 7.33 -40.82 -0.30 5.85 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.01 7.73 -51.93 -0.40 0.61 16 32 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.24 8.14 -51.92 -0.42 -0.18 16 35 H 0.34 2.71 8.79 -39.29 -0.35 2.36 16 36 H 0.07 0.84 7.39 -51.93 -0.38 0.46 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 293.71 15.07 4.43 4.43 Total: -1.00 -32.95 293.71 -6.50 -39.45 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.11 Total: 5.68 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -0.70 Total: -6.02 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.06 Total: -47.26 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.08 Total: -13.94 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.14 Total: 17.65 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.95 -6.50 -39.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121993451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.682 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds