Wall clock time and date at job start Sun Mar 29 2020 22:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46926 * 2 1 4 4 C 1.50693 * 109.47024 * 239.99867 * 2 1 3 5 5 H 1.07999 * 119.99960 * 239.99813 * 4 2 1 6 6 C 1.37874 * 120.00252 * 60.00468 * 4 2 1 7 7 N 1.31515 * 119.99652 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00179 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47152 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.46784 * 299.99531 * 8 6 4 11 11 H 1.48500 * 109.47026 * 59.99464 * 8 6 4 12 12 C 1.50704 * 109.46951 * 119.99524 * 2 1 3 13 13 O 1.21280 * 119.99894 * 22.77202 * 12 2 1 14 14 N 1.34777 * 119.99951 * 202.76516 * 12 2 1 15 15 C 1.46931 * 120.63093 * 5.05138 * 14 12 2 16 16 C 1.53182 * 108.77604 * 233.58514 * 15 14 12 17 17 C 1.53040 * 109.31428 * 305.36635 * 16 15 14 18 18 H 1.09003 * 109.46076 * 301.34372 * 17 16 15 19 19 N 1.46902 * 109.46278 * 181.38757 * 17 16 15 20 20 C 1.53042 * 109.54149 * 61.36431 * 17 16 15 21 21 C 1.46924 * 120.63169 * 184.77174 * 14 12 2 22 22 H 1.09004 * 109.58473 * 6.62321 * 21 14 12 23 23 C 1.52997 * 109.58542 * 246.20672 * 21 14 12 24 24 H 1.09004 * 109.47147 * 293.93165 * 1 2 3 25 25 H 1.09001 * 109.47003 * 53.92690 * 1 2 3 26 26 H 1.08997 * 109.47050 * 173.93002 * 1 2 3 27 27 H 0.97010 * 119.99577 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.58217 * 353.37488 * 15 14 12 29 29 H 1.08998 * 109.58709 * 113.65220 * 15 14 12 30 30 H 1.09002 * 109.50387 * 65.31554 * 16 15 14 31 31 H 1.09005 * 109.50060 * 185.41480 * 16 15 14 32 32 H 1.00899 * 110.99899 * 60.00052 * 19 17 16 33 33 H 1.00903 * 110.99794 * 183.95396 * 19 17 16 34 34 H 1.08997 * 109.49639 * 58.58686 * 20 17 16 35 35 H 1.09001 * 109.50100 * 178.65578 * 20 17 16 36 36 H 1.09000 * 109.47576 * 59.99718 * 23 21 14 37 37 H 1.08996 * 109.47571 * 180.02562 * 23 21 14 38 38 H 1.09002 * 109.47089 * 299.99447 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6033 8 14 2.3214 -1.1205 -4.0079 9 1 1.8261 -0.4207 -5.2204 10 1 3.8063 -1.1210 -4.0081 11 1 1.8258 -2.5203 -4.0076 12 6 2.0323 -0.7103 1.2306 13 8 1.3213 -1.5096 1.8020 14 7 3.2716 -0.4575 1.6959 15 6 4.1033 0.5866 1.0818 16 6 5.4531 -0.0240 0.6921 17 6 6.0818 -0.6874 1.9195 18 1 6.2088 0.0543 2.7081 19 7 7.3917 -1.2452 1.5573 20 6 5.1696 -1.8106 2.4180 21 6 3.8144 -1.2163 2.8309 22 1 3.1269 -2.0198 3.0955 23 6 4.0026 -0.2833 4.0287 24 1 -0.3633 0.4169 0.9393 25 1 -0.3633 0.6051 -0.8306 26 1 -0.3633 -1.0219 -0.1087 27 1 0.7083 1.1609 -3.4844 28 1 3.6064 0.9731 0.1919 29 1 4.2584 1.3965 1.7945 30 1 5.3032 -0.7704 -0.0881 31 1 6.1144 0.7603 0.3236 32 1 8.0132 -0.5228 1.2259 33 1 7.7991 -1.7448 2.3336 34 1 5.0223 -2.5401 1.6217 35 1 5.6293 -2.2982 3.2777 36 1 3.0413 0.1481 4.3079 37 1 4.4057 -0.8479 4.8694 38 1 4.6954 0.5149 3.7622 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122129246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:09 Heat of formation + Delta-G solvation = -49.111260 kcal Electronic energy + Delta-G solvation = -18514.226899 eV Core-core repulsion = 15776.876017 eV Total energy + Delta-G solvation = -2737.350882 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.74462 -37.33071 -34.05975 -33.87732 -32.08241 -30.18888 -29.47776 -27.18893 -25.17150 -23.44806 -23.09513 -21.52098 -19.47504 -17.76619 -16.52218 -16.31287 -15.64901 -15.30205 -15.06830 -14.44595 -14.14796 -13.63068 -13.31749 -12.95311 -12.80500 -12.70100 -12.02942 -11.86202 -11.62045 -11.43032 -11.18802 -10.94758 -10.88520 -10.80627 -10.49303 -10.38888 -10.24795 -10.15417 -9.93096 -9.00979 -8.64317 -8.57096 -8.30395 -7.95802 -6.09022 -4.16237 3.30252 3.34359 3.37527 3.71554 3.79762 4.41154 4.51021 4.90780 5.00375 5.23046 5.27922 5.38923 5.45209 5.60915 5.68583 5.76218 5.95077 5.98032 6.00228 6.09587 6.16646 6.35979 6.43798 6.49738 6.69081 6.87568 7.03333 7.12077 7.17824 7.33046 7.43178 7.59909 7.78505 7.97042 8.19391 8.33349 8.83829 9.26210 9.49260 10.97325 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023381 B = 0.008916 C = 0.007186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.282932 B = 3139.586213 C = 3895.685204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.031 3.969 3 H 0.047 0.953 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.276 1.276 12 C 0.530 3.470 13 O -0.567 6.567 14 N -0.613 5.613 15 C 0.112 3.888 16 C -0.124 4.124 17 C 0.092 3.908 18 H 0.034 0.966 19 N -0.848 5.848 20 C -0.119 4.119 21 C 0.135 3.865 22 H 0.095 0.905 23 C -0.159 4.159 24 H 0.009 0.991 25 H 0.082 0.918 26 H 0.037 0.963 27 H 0.263 0.737 28 H 0.111 0.889 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.339 0.661 33 H 0.336 0.664 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.634 1.013 8.676 13.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.010 3.990 3 H 0.064 0.936 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.212 1.212 10 H -0.200 1.200 11 H -0.202 1.202 12 C 0.323 3.677 13 O -0.446 6.446 14 N -0.347 5.347 15 C -0.012 4.012 16 C -0.163 4.163 17 C -0.019 4.019 18 H 0.052 0.948 19 N -0.377 5.377 20 C -0.157 4.157 21 C 0.030 3.970 22 H 0.113 0.887 23 C -0.217 4.217 24 H 0.028 0.972 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.129 0.871 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.744 0.289 8.282 12.791 hybrid contribution 0.873 0.178 -0.094 0.895 sum 10.617 0.467 8.188 13.416 Atomic orbital electron populations 1.21572 0.96213 1.00947 0.99041 1.18925 0.94599 0.96240 0.89240 0.93573 1.20690 1.31993 1.12665 0.89182 0.92475 1.24892 0.94772 0.94893 0.98905 1.69894 1.36034 1.22664 1.23809 0.86570 0.79250 0.79890 0.81867 1.21191 1.20049 1.20165 1.21969 0.79296 0.81471 0.85001 1.90514 1.56335 1.37324 1.60410 1.48225 1.15982 1.37823 1.32690 1.21692 0.91019 0.89306 0.99179 1.21903 0.96027 1.00601 0.97780 1.21374 0.89122 0.95152 0.96271 0.94789 1.58704 1.05219 1.32610 1.41169 1.21984 0.94763 0.97933 1.01054 1.21067 0.94543 0.94846 0.86522 0.88655 1.22131 1.01999 1.00025 0.97523 0.97187 0.89904 0.94353 0.92682 0.87104 0.93059 0.90028 0.91643 0.84904 0.85164 0.90682 0.91890 0.92372 0.92293 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 8.28 37.16 0.31 -2.76 16 2 C 0.03 0.78 1.80 -92.92 -0.17 0.61 16 3 H 0.05 1.16 6.39 -51.93 -0.33 0.83 16 4 C -0.51 -13.64 8.27 -34.44 -0.28 -13.93 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -24.34 11.39 55.43 0.63 -23.71 16 8 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 C 0.53 12.56 6.76 -10.98 -0.07 12.49 16 13 O -0.57 -14.87 15.62 5.56 0.09 -14.79 16 14 N -0.61 -11.76 2.68 -164.97 -0.44 -12.20 16 15 C 0.11 1.88 5.84 -3.71 -0.02 1.86 16 16 C -0.12 -1.87 5.65 -26.62 -0.15 -2.02 16 17 C 0.09 1.18 3.00 -67.67 -0.20 0.97 16 18 H 0.03 0.41 6.49 -51.93 -0.34 0.07 16 19 N -0.85 -9.52 9.25 -4.63 -0.04 -9.56 16 20 C -0.12 -1.68 5.12 -26.39 -0.14 -1.82 16 21 C 0.13 2.19 3.21 -67.38 -0.22 1.97 16 22 H 0.10 1.75 7.03 -51.93 -0.37 1.38 16 23 C -0.16 -2.09 9.03 37.16 0.34 -1.76 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.08 2.21 6.26 -51.93 -0.32 1.88 16 26 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 27 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.11 2.13 5.32 -51.93 -0.28 1.86 16 29 H 0.05 0.75 7.49 -51.93 -0.39 0.36 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.34 3.25 9.04 -39.29 -0.36 2.90 16 33 H 0.34 3.14 8.99 -39.29 -0.35 2.79 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.69 5.71 -51.93 -0.30 0.39 16 LS Contribution 295.88 15.07 4.46 4.46 Total: -1.00 -29.93 295.88 -6.98 -36.92 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.95 Total: 5.56 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -0.70 Total: -2.65 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.15 Total: -45.47 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.09 Total: -14.79 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.93 -6.98 -36.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122129246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.196 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds