Wall clock time and date at job start Sun Mar 29 2020 22:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46651 * 2 1 4 4 C 1.50699 * 109.47077 * 239.99802 * 2 1 3 5 5 H 1.07995 * 119.99813 * 239.99252 * 4 2 1 6 6 C 1.37883 * 120.00001 * 60.00368 * 4 2 1 7 7 N 1.31514 * 119.99648 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00042 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47061 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47327 * 119.99446 * 8 6 4 11 11 H 1.48494 * 109.46918 * 239.99750 * 8 6 4 12 12 C 1.50700 * 109.47321 * 119.99777 * 2 1 3 13 13 O 1.21273 * 119.99966 * 105.40300 * 12 2 1 14 14 N 1.34776 * 119.99913 * 285.40486 * 12 2 1 15 15 C 1.46932 * 120.63183 * 4.98813 * 14 12 2 16 16 C 1.53629 * 108.54053 * 126.36842 * 15 14 12 17 17 C 1.53048 * 109.24017 * 54.86156 * 16 15 14 18 18 H 1.09002 * 109.44593 * 58.51939 * 17 16 15 19 19 N 1.46896 * 109.45876 * 178.48984 * 17 16 15 20 20 C 1.53036 * 109.53505 * 298.50988 * 17 16 15 21 21 C 1.46924 * 120.63067 * 185.27435 * 14 12 2 22 22 H 1.09002 * 109.58836 * 113.79557 * 21 14 12 23 23 C 1.52999 * 109.58530 * 353.51353 * 21 14 12 24 24 H 1.09008 * 109.46683 * 184.33672 * 1 2 3 25 25 H 1.09001 * 109.46920 * 304.33219 * 1 2 3 26 26 H 1.09001 * 109.47227 * 64.33569 * 1 2 3 27 27 H 0.97001 * 119.99932 * 180.02562 * 7 6 4 28 28 H 1.08993 * 109.58670 * 246.20696 * 15 14 12 29 29 H 1.09002 * 109.58091 * 6.63320 * 15 14 12 30 30 H 1.08996 * 109.63608 * 294.86881 * 16 15 14 31 31 H 1.08998 * 109.45348 * 174.74059 * 16 15 14 32 32 H 1.00899 * 110.99932 * 300.06402 * 19 17 16 33 33 H 1.00898 * 111.00050 * 64.01973 * 19 17 16 34 34 H 1.09001 * 109.50179 * 301.41272 * 20 17 16 35 35 H 1.09005 * 109.49684 * 181.31801 * 20 17 16 36 36 H 1.08999 * 109.47340 * 63.09058 * 23 21 14 37 37 H 1.09003 * 109.46934 * 183.08773 * 23 21 14 38 38 H 1.09002 * 109.46872 * 303.08675 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1484 -2.2857 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1473 -0.1858 -4.8160 12 6 2.0324 -0.7104 1.2305 13 8 2.4976 -1.8266 1.1388 14 7 1.9648 -0.1051 2.4328 15 6 1.3059 1.2002 2.5779 16 6 0.2460 1.0920 3.6847 17 6 0.9053 0.5754 4.9656 18 1 1.7057 1.2539 5.2609 19 7 -0.0967 0.5045 6.0375 20 6 1.4849 -0.8189 4.7164 21 6 2.5539 -0.7351 3.6222 22 1 3.3925 -0.1354 3.9759 23 6 3.0420 -2.1415 3.2691 24 1 -0.3633 -1.0248 0.0777 25 1 -0.3633 0.5796 0.8486 26 1 -0.3634 0.4451 -0.9263 27 1 0.7082 1.1609 -3.4844 28 1 2.0449 1.9544 2.8481 29 1 0.8276 1.4745 1.6376 30 1 -0.5380 0.4011 3.3749 31 1 -0.1874 2.0749 3.8696 32 1 -0.4946 1.4133 6.2211 33 1 -0.8162 -0.1673 5.8159 34 1 0.6893 -1.4919 4.3968 35 1 1.9337 -1.1959 5.6354 36 1 3.8328 -2.0748 2.5219 37 1 3.4286 -2.6275 4.1649 38 1 2.2122 -2.7242 2.8689 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122129251.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:12 Heat of formation + Delta-G solvation = -52.897111 kcal Electronic energy + Delta-G solvation = -18459.971574 eV Core-core repulsion = 15722.456525 eV Total energy + Delta-G solvation = -2737.515049 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.46558 -38.67574 -36.07595 -35.31672 -33.95323 -31.94324 -30.53080 -28.19799 -27.25963 -25.07813 -24.21551 -22.72822 -21.61065 -19.76551 -18.31979 -17.60424 -17.01824 -16.90282 -16.39852 -15.94009 -15.48037 -15.07675 -15.00466 -14.71988 -14.23567 -14.07078 -13.45819 -13.34780 -13.07101 -12.90333 -12.79106 -12.67922 -12.53241 -12.38926 -12.23047 -12.05762 -11.97686 -11.80623 -11.48014 -11.05872 -10.53878 -9.71147 -9.64454 -9.35714 -8.16368 -6.26641 1.37764 1.39865 1.53100 1.95403 2.19101 2.45395 3.12869 3.54007 3.70099 3.86981 4.04734 4.12649 4.24625 4.33237 4.46664 4.52483 4.64789 4.68382 4.74243 4.85861 4.94537 4.96939 4.98522 5.03303 5.06632 5.20019 5.34942 5.39855 5.48386 5.71063 5.83485 5.97502 6.20799 6.24358 6.62174 6.65239 6.82132 7.39750 7.57098 8.89426 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038712 B = 0.006821 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.118560 B = 4103.983331 C = 4625.581465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.027 3.973 3 H 0.036 0.964 4 C -0.525 4.525 5 H 0.046 0.954 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.273 1.273 12 C 0.518 3.482 13 O -0.572 6.572 14 N -0.616 5.616 15 C 0.100 3.900 16 C -0.157 4.157 17 C 0.099 3.901 18 H 0.089 0.911 19 N -0.844 5.844 20 C -0.111 4.111 21 C 0.139 3.861 22 H 0.081 0.919 23 C -0.123 4.123 24 H 0.015 0.985 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.265 0.735 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.351 0.649 33 H 0.342 0.658 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.042 0.958 37 H 0.064 0.936 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.266 3.515 15.134 15.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.006 3.994 3 H 0.054 0.946 4 C -0.564 4.564 5 H 0.064 0.936 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.200 1.200 11 H -0.198 1.198 12 C 0.309 3.691 13 O -0.452 6.452 14 N -0.351 5.351 15 C -0.023 4.023 16 C -0.198 4.198 17 C -0.013 4.013 18 H 0.108 0.892 19 N -0.373 5.373 20 C -0.150 4.150 21 C 0.036 3.964 22 H 0.099 0.901 23 C -0.180 4.180 24 H 0.035 0.965 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.165 0.835 33 H 0.155 0.845 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.499 2.802 15.446 15.770 hybrid contribution -0.397 -0.172 -1.994 2.040 sum -1.896 2.630 13.453 13.838 Atomic orbital electron populations 1.21635 0.95472 0.98634 1.02023 1.18789 0.94967 0.95774 0.89889 0.94588 1.21309 1.31446 1.12436 0.91191 0.93612 1.25586 0.95233 0.95751 1.01377 1.69942 1.37257 1.23624 1.24235 0.85552 0.78347 0.78588 0.79452 1.20535 1.20009 1.19831 1.21527 0.76563 0.85871 0.85164 1.90571 1.47047 1.21070 1.86504 1.48332 1.57808 1.21675 1.07258 1.22037 0.95695 0.83881 1.00704 1.22815 0.97920 1.02856 0.96162 1.21338 0.95250 0.96227 0.88482 0.89249 1.58937 1.20145 1.14194 1.44016 1.21908 0.97843 0.97292 0.97961 1.21353 0.95649 0.94487 0.84936 0.90078 1.21978 1.01218 0.95386 0.99458 0.96535 0.92946 0.90941 0.92590 0.90096 0.89777 0.92721 0.88541 0.83492 0.84516 0.93170 0.89082 0.93875 0.91781 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.67 71.98 0.62 -5.00 16 2 C 0.03 1.38 1.78 -12.28 -0.02 1.35 16 3 H 0.04 1.89 7.38 -2.39 -0.02 1.87 16 4 C -0.53 -30.77 8.36 25.60 0.21 -30.56 16 5 H 0.05 2.87 6.85 -2.91 -0.02 2.85 16 6 C 0.02 1.10 5.29 84.66 0.45 1.55 16 7 N -0.91 -51.28 11.29 21.45 0.24 -51.04 16 8 Si 0.95 45.26 29.54 68.60 2.03 47.28 16 9 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.52 24.21 6.84 87.66 0.60 24.81 16 13 O -0.57 -30.17 10.98 -3.01 -0.03 -30.20 16 14 N -0.62 -21.79 2.97 -794.18 -2.36 -24.15 16 15 C 0.10 2.81 5.76 86.51 0.50 3.30 16 16 C -0.16 -3.33 5.66 30.82 0.17 -3.15 16 17 C 0.10 1.90 3.21 44.94 0.14 2.04 16 18 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 19 N -0.84 -13.49 9.25 -168.57 -1.56 -15.05 16 20 C -0.11 -2.61 4.92 30.67 0.15 -2.46 16 21 C 0.14 4.11 3.48 44.98 0.16 4.27 16 22 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 23 C -0.12 -4.22 7.60 71.98 0.55 -3.67 16 24 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.05 2.03 5.89 -2.39 -0.01 2.02 16 26 H 0.07 3.74 5.97 -2.39 -0.01 3.72 16 27 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 28 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.08 2.71 4.20 -2.39 -0.01 2.70 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.35 4.32 9.04 -89.70 -0.81 3.51 16 33 H 0.34 5.32 8.98 -89.70 -0.81 4.51 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.04 1.73 6.69 -2.39 -0.02 1.72 16 37 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.04 1.65 6.81 -2.39 -0.02 1.64 16 Total: -1.00 -66.38 290.31 1.31 -65.07 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -0.55 Total: 15.59 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 3.54 Total: -7.51 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -3.67 Total: -90.23 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.03 Total: -30.20 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -66.38 1.31 -65.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122129251.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.173 kcal (2) G-P(sol) polarization free energy of solvation -66.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds