Wall clock time and date at job start Sun Mar 29 2020 22:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99926 * 2 1 4 4 N 1.34775 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.63493 * 0.02562 * 4 2 1 6 6 C 1.53193 * 108.78047 * 126.36515 * 5 4 2 7 7 C 1.53046 * 109.30894 * 54.63195 * 6 5 4 8 8 H 1.08997 * 109.45504 * 178.61356 * 7 6 5 9 9 C 1.53009 * 109.45496 * 58.64896 * 7 6 5 10 10 C 1.53030 * 109.54094 * 298.63834 * 7 6 5 11 11 H 1.08997 * 109.49801 * 301.41417 * 10 7 6 12 12 C 1.52998 * 109.49761 * 181.34688 * 10 7 6 13 13 N 1.46503 * 109.47398 * 174.99840 * 12 10 7 14 14 C 1.36936 * 119.99979 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00321 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99805 * 180.02562 * 14 13 12 17 17 N 1.31614 * 119.99942 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99899 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47448 * 90.00022 * 18 16 14 20 20 H 1.48508 * 109.46905 * 209.99753 * 18 16 14 21 21 H 1.48502 * 109.47174 * 329.99590 * 18 16 14 22 22 C 1.46928 * 120.63036 * 179.72051 * 4 2 1 23 23 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46980 * 240.00238 * 1 2 3 25 25 H 1.09004 * 109.47113 * 120.00219 * 1 2 3 26 26 H 1.09002 * 109.58604 * 246.15897 * 5 4 2 27 27 H 1.09004 * 109.58732 * 6.43497 * 5 4 2 28 28 H 1.08996 * 109.49720 * 174.58949 * 6 5 4 29 29 H 1.08999 * 109.49500 * 294.65809 * 6 5 4 30 30 H 1.08998 * 109.47232 * 59.99817 * 9 7 6 31 31 H 1.09004 * 109.46414 * 179.97438 * 9 7 6 32 32 H 1.09003 * 109.46736 * 299.99442 * 9 7 6 33 33 H 1.08996 * 109.47588 * 295.00147 * 12 10 7 34 34 H 1.09004 * 109.46987 * 55.00304 * 12 10 7 35 35 H 0.97001 * 119.99773 * 0.02562 * 13 12 10 36 36 H 0.96998 * 120.00044 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.58531 * 353.41838 * 22 4 2 38 38 H 1.09000 * 109.58854 * 113.84262 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4603 -2.4476 0.0005 6 6 1.9684 -3.2994 -1.1670 7 6 3.4898 -3.4343 -1.0706 8 1 3.8512 -4.0604 -1.8863 9 6 3.8607 -4.0765 0.2678 10 6 4.1336 -2.0494 -1.1671 11 1 3.8495 -1.5810 -2.1094 12 6 5.6559 -2.1884 -1.1043 13 7 6.2752 -0.8777 -1.3162 14 6 7.6390 -0.7547 -1.3035 15 1 8.2581 -1.6239 -1.1377 16 6 8.2257 0.4874 -1.5037 17 7 9.5364 0.6057 -1.4910 18 14 7.1548 1.9910 -1.7898 19 1 6.8372 2.6278 -0.4864 20 1 7.8811 2.9595 -2.6500 21 1 5.8949 1.5810 -2.4605 22 6 3.6500 -1.1834 -0.0056 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3633 -0.5139 -0.8900 26 1 1.6425 -2.9694 0.9400 27 1 0.3918 -2.2657 -0.1150 28 1 1.5118 -4.2881 -1.1217 29 1 1.7043 -2.8195 -2.1093 30 1 3.4033 -5.0635 0.3363 31 1 4.9443 -4.1731 0.3364 32 1 3.4989 -3.4508 1.0836 33 1 5.9457 -2.5733 -0.1266 34 1 5.9901 -2.8777 -1.8798 35 1 5.7192 -0.0970 -1.4655 36 1 9.9464 1.4736 -1.6306 37 1 4.0262 -0.1677 -0.1279 38 1 4.0148 -1.5998 0.9333 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132577857.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:29 Heat of formation + Delta-G solvation = -31.631612 kcal Electronic energy + Delta-G solvation = -18161.609127 eV Core-core repulsion = 15425.016219 eV Total energy + Delta-G solvation = -2736.592908 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.37816 -38.10445 -35.11725 -33.59638 -31.97780 -30.63517 -29.63770 -27.66091 -25.52946 -24.62087 -22.88255 -21.11176 -19.92586 -18.20551 -17.51622 -16.96586 -15.94514 -15.42073 -15.07024 -14.95204 -14.15897 -13.96791 -13.62846 -13.39151 -13.12551 -12.74778 -12.68065 -12.45877 -12.24787 -11.95390 -11.73207 -11.51725 -11.19022 -11.05050 -10.80821 -10.67931 -10.33903 -10.15165 -10.01707 -9.69364 -9.51302 -8.83387 -8.52743 -7.17117 -5.71555 -3.06810 2.66650 3.04310 3.47385 3.52406 3.55937 4.50704 4.60936 4.66877 4.77177 4.81860 5.04238 5.10041 5.17635 5.21271 5.25398 5.46020 5.52691 5.58861 5.60638 5.67454 5.74224 5.77776 5.81234 5.91300 6.00455 6.21506 6.25420 6.28409 6.44027 6.56143 6.69332 6.80329 7.45620 8.04204 8.22760 8.47558 9.26803 9.99843 10.19180 11.46719 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024093 B = 0.007851 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.886788 B = 3565.774972 C = 4517.094007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.506 3.494 3 O -0.543 6.543 4 N -0.612 5.612 5 C 0.106 3.894 6 C -0.130 4.130 7 C -0.084 4.084 8 H 0.075 0.925 9 C -0.154 4.154 10 C -0.107 4.107 11 H 0.072 0.928 12 C 0.165 3.835 13 N -0.757 5.757 14 C -0.244 4.244 15 H 0.090 0.910 16 C 0.006 3.994 17 N -0.935 5.935 18 Si 0.882 3.118 19 H -0.282 1.282 20 H -0.291 1.291 21 H -0.277 1.277 22 C 0.116 3.884 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.032 0.968 34 H 0.029 0.971 35 H 0.362 0.638 36 H 0.259 0.741 37 H 0.094 0.906 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.141 -9.800 3.103 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.420 6.420 4 N -0.346 5.346 5 C -0.017 4.017 6 C -0.168 4.168 7 C -0.103 4.103 8 H 0.094 0.906 9 C -0.211 4.211 10 C -0.126 4.126 11 H 0.090 0.910 12 C 0.037 3.963 13 N -0.403 5.403 14 C -0.374 4.374 15 H 0.108 0.892 16 C -0.190 4.190 17 N -0.583 5.583 18 Si 0.712 3.288 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.005 4.005 23 H 0.108 0.892 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.195 0.805 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.578 -9.285 3.131 22.792 hybrid contribution -0.645 1.039 -0.299 1.259 sum -21.223 -8.246 2.832 22.944 Atomic orbital electron populations 1.21928 0.92226 1.05180 1.03782 1.20804 0.90501 0.83285 0.76005 1.90756 1.70686 1.31023 1.49584 1.48218 1.07480 1.05683 1.73263 1.21780 0.96293 0.84373 0.99302 1.21950 0.96498 0.99810 0.98528 1.21058 0.94139 0.96337 0.98788 0.90644 1.21997 1.02470 0.99735 0.96878 1.21657 0.97118 0.95053 0.98819 0.90963 1.20665 0.88155 0.88835 0.98627 1.42789 1.04509 1.04552 1.88463 1.19041 0.81110 0.95634 1.41616 0.89216 1.24647 0.95336 0.97192 1.01802 1.69702 1.08007 1.23776 1.56792 0.86593 0.79953 0.84049 0.78236 1.20865 1.21732 1.20310 1.21630 0.77805 1.02558 0.98547 0.89218 0.89624 0.89587 0.91046 0.89995 0.90738 0.91549 0.93020 0.91620 0.92449 0.95058 0.95299 0.80529 0.93099 0.88754 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 8.67 36.01 0.31 -1.20 16 2 C 0.51 7.30 7.81 -10.98 -0.09 7.22 16 3 O -0.54 -10.79 16.50 5.56 0.09 -10.70 16 4 N -0.61 -8.05 2.98 -173.05 -0.52 -8.57 16 5 C 0.11 0.93 5.88 -3.71 -0.02 0.91 16 6 C -0.13 -1.16 5.63 -26.61 -0.15 -1.31 16 7 C -0.08 -0.96 2.71 -90.58 -0.25 -1.21 16 8 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 9 C -0.15 -1.62 8.11 37.16 0.30 -1.32 16 10 C -0.11 -1.66 2.13 -90.75 -0.19 -1.85 16 11 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 12 C 0.16 3.19 5.19 -4.04 -0.02 3.17 16 13 N -0.76 -18.74 5.18 -59.91 -0.31 -19.05 16 14 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 16 15 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 16 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 17 N -0.93 -30.22 13.97 55.49 0.78 -29.45 16 18 Si 0.88 23.67 27.74 -169.99 -4.71 18.95 16 19 H -0.28 -7.62 7.11 56.52 0.40 -7.22 16 20 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 21 H -0.28 -7.19 6.52 56.52 0.37 -6.83 16 22 C 0.12 1.88 5.03 -3.95 -0.02 1.86 16 23 H 0.09 0.81 8.12 -51.93 -0.42 0.39 16 24 H 0.09 0.56 7.94 -51.93 -0.41 0.14 16 25 H 0.09 0.59 7.70 -51.93 -0.40 0.19 16 26 H 0.07 0.57 6.69 -51.93 -0.35 0.22 16 27 H 0.08 0.51 5.93 -51.93 -0.31 0.20 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.78 6.57 -51.93 -0.34 0.44 16 32 H 0.06 0.61 4.99 -51.93 -0.26 0.35 16 33 H 0.03 0.60 6.73 -51.93 -0.35 0.25 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.36 9.05 4.75 -40.82 -0.19 8.85 16 36 H 0.26 7.98 8.31 -40.82 -0.34 7.65 16 37 H 0.09 1.90 6.20 -51.93 -0.32 1.57 16 38 H 0.07 1.10 6.70 -51.93 -0.35 0.76 16 LS Contribution 291.76 15.07 4.40 4.40 Total: -1.00 -35.28 291.76 -6.48 -41.76 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.83 Total: 3.61 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -0.38 Total: -0.95 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.05 Total: -57.07 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -4.71 Total: 18.95 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -35.28 -6.48 -41.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132577857.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.130 kcal (2) G-P(sol) polarization free energy of solvation -35.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds