Wall clock time and date at job start Sun Mar 29 2020 22:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.01454 * 2 1 4 4 C 1.54265 * 110.03338 * 238.60363 * 2 1 3 5 5 C 1.54890 * 104.19752 * 217.05592 * 4 2 1 6 6 C 1.54890 * 102.74405 * 37.94684 * 5 4 2 7 7 H 1.09000 * 110.48832 * 80.86639 * 6 5 4 8 8 C 1.50702 * 110.48322 * 203.37912 * 6 5 4 9 9 O 1.21283 * 120.00262 * 118.54824 * 8 6 5 10 10 N 1.34770 * 120.00154 * 298.54221 * 8 6 5 11 11 C 1.46502 * 120.00587 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.47591 * 180.02562 * 11 10 8 13 13 N 1.46498 * 109.47059 * 179.97438 * 12 11 10 14 14 C 1.36943 * 119.99752 * 179.72430 * 13 12 11 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31611 * 120.00081 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99814 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47483 * 90.00178 * 18 16 14 20 20 H 1.48498 * 109.47011 * 210.00042 * 18 16 14 21 21 H 1.48502 * 109.47495 * 329.99664 * 18 16 14 22 22 C 1.53873 * 110.06908 * 121.41615 * 2 1 3 23 23 H 1.09002 * 109.46886 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47613 * 299.94064 * 1 2 3 25 25 H 1.09003 * 109.46965 * 59.94183 * 1 2 3 26 26 H 1.09001 * 110.48182 * 98.38200 * 4 2 1 27 27 H 1.09001 * 110.48867 * 335.74168 * 4 2 1 28 28 H 1.09000 * 110.75438 * 279.63325 * 5 4 2 29 29 H 1.08998 * 110.91449 * 156.32843 * 5 4 2 30 30 H 0.97000 * 120.00155 * 0.02562 * 10 8 6 31 31 H 1.09004 * 109.46697 * 60.00211 * 11 10 8 32 32 H 1.09000 * 109.46990 * 300.01042 * 11 10 8 33 33 H 1.09004 * 109.47066 * 60.00267 * 12 11 10 34 34 H 1.08994 * 109.46974 * 300.00415 * 12 11 10 35 35 H 0.97001 * 120.00384 * 0.02562 * 13 12 11 36 36 H 0.97008 * 120.00329 * 179.97438 * 17 16 14 37 37 H 1.09001 * 110.03751 * 0.02562 * 22 2 1 38 38 H 1.08999 * 110.03062 * 238.59453 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7550 -1.2371 5 6 3.3145 -1.4995 -0.7200 6 6 2.8890 -1.9398 0.7028 7 1 2.2812 -2.8435 0.6567 8 6 4.1010 -2.1645 1.5698 9 8 4.2646 -1.4961 2.5685 10 7 5.0032 -3.1083 1.2354 11 6 6.1817 -3.3264 2.0779 12 6 7.0373 -4.4443 1.4787 13 7 8.2160 -4.6619 2.3209 14 6 9.1301 -5.6243 1.9838 15 1 8.9842 -6.2198 1.0947 16 6 10.2441 -5.8344 2.7849 17 7 11.1228 -6.7590 2.4607 18 14 10.4959 -4.8049 4.3231 19 1 9.8470 -5.4746 5.4788 20 1 11.9497 -4.6585 4.5883 21 1 9.8914 -3.4630 4.1252 22 6 2.0581 -0.7534 1.2334 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5129 0.8904 25 1 -0.3633 0.5148 -0.8895 26 1 2.3290 -0.0528 -2.0257 27 1 1.3146 -1.4660 -1.5967 28 1 4.1713 -0.8271 -0.6762 29 1 3.5368 -2.3663 -1.3423 30 1 4.8726 -3.6427 0.4365 31 1 5.8636 -3.6099 3.0812 32 1 6.7672 -2.4084 2.1283 33 1 7.3554 -4.1603 0.4755 34 1 6.4519 -5.3623 1.4280 35 1 8.3469 -4.1273 3.1196 36 1 11.9015 -6.9056 3.0203 37 1 1.2244 -1.1198 1.8324 38 1 2.6874 -0.0948 1.8320 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134738182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:02 Heat of formation + Delta-G solvation = -49.190176 kcal Electronic energy + Delta-G solvation = -16886.767960 eV Core-core repulsion = 14149.413656 eV Total energy + Delta-G solvation = -2737.354304 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.16410 -37.84717 -35.81655 -33.94892 -31.92857 -31.23041 -29.19473 -28.13784 -25.50676 -23.46958 -21.89843 -21.48625 -20.29799 -19.43287 -17.85701 -17.30078 -15.95528 -15.60788 -15.16149 -14.87499 -14.38926 -13.94905 -13.78453 -13.71682 -13.36863 -13.31197 -12.64774 -12.41579 -11.96582 -11.57034 -11.51284 -11.37152 -11.07026 -11.06229 -10.98499 -10.87307 -10.85397 -10.64538 -10.16980 -9.72476 -9.62157 -9.03013 -8.88241 -7.31503 -5.81179 -3.18583 2.68817 3.22438 3.37774 3.41561 3.45444 4.23512 4.29120 4.48284 4.56672 4.87914 4.99444 5.07413 5.20599 5.24317 5.32437 5.34150 5.36684 5.44034 5.50818 5.60442 5.65126 5.66391 5.71481 5.77895 5.86706 5.94595 5.97671 6.12025 6.19090 6.40810 6.58254 6.63774 7.57561 7.92392 8.28779 8.36982 9.14693 9.87054 10.05456 11.36694 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.059748 B = 0.003772 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.522052 B = 7420.996190 C = 7737.349241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.072 0.928 4 C -0.119 4.119 5 C -0.116 4.116 6 C -0.113 4.113 7 H 0.100 0.900 8 C 0.516 3.484 9 O -0.544 6.544 10 N -0.722 5.722 11 C 0.106 3.894 12 C 0.149 3.851 13 N -0.753 5.753 14 C -0.249 4.249 15 H 0.091 0.909 16 C 0.007 3.993 17 N -0.932 5.932 18 Si 0.885 3.115 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.276 1.276 22 C -0.107 4.107 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.401 0.599 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.032 0.968 34 H 0.033 0.967 35 H 0.363 0.637 36 H 0.261 0.739 37 H 0.068 0.932 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.248 12.058 -7.361 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.090 0.910 4 C -0.156 4.156 5 C -0.153 4.153 6 C -0.135 4.135 7 H 0.118 0.882 8 C 0.302 3.698 9 O -0.421 6.421 10 N -0.373 5.373 11 C -0.017 4.017 12 C 0.021 3.979 13 N -0.399 5.399 14 C -0.379 4.379 15 H 0.109 0.891 16 C -0.189 4.189 17 N -0.579 5.579 18 Si 0.715 3.285 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.145 4.145 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.235 0.765 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.196 0.804 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.991 12.347 -6.751 25.271 hybrid contribution 0.316 0.284 0.754 0.866 sum -20.674 12.631 -5.996 24.958 Atomic orbital electron populations 1.21888 0.95007 1.01766 1.01526 1.21775 0.95655 0.99640 0.94667 0.90962 1.22440 0.96893 0.99007 0.97271 1.22503 0.98522 1.00598 0.93723 1.22162 0.94929 1.00890 0.95501 0.88170 1.20546 0.84038 0.79429 0.85769 1.90685 1.76837 1.47270 1.27293 1.45914 1.24006 1.38368 1.29052 1.21592 0.85846 0.99764 0.94543 1.20727 0.88234 0.94529 0.94407 1.42542 1.24255 1.44294 1.28834 1.19012 0.99879 1.10239 1.08732 0.89092 1.24672 0.96969 0.98513 0.98768 1.69698 1.13450 1.34899 1.39890 0.86542 0.77266 0.80447 0.84274 1.20908 1.21568 1.20172 1.22155 0.99092 0.96016 0.97275 0.92581 0.92709 0.92818 0.91432 0.91218 0.90859 0.90693 0.76523 0.91442 0.91457 0.94968 0.94934 0.80388 0.92925 0.91371 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.84 37.16 0.33 -0.62 16 2 C -0.10 -0.76 3.50 -89.50 -0.31 -1.08 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.12 -0.82 6.36 -25.07 -0.16 -0.98 16 5 C -0.12 -0.93 6.26 -24.74 -0.15 -1.08 16 6 C -0.11 -1.09 3.25 -90.11 -0.29 -1.39 16 7 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 8 C 0.52 7.03 7.15 -10.99 -0.08 6.95 16 9 O -0.54 -9.66 15.46 5.55 0.09 -9.57 16 10 N -0.72 -9.39 5.50 -60.29 -0.33 -9.72 16 11 C 0.11 1.74 5.79 -4.04 -0.02 1.71 16 12 C 0.15 2.79 6.37 -4.04 -0.03 2.76 16 13 N -0.75 -18.04 5.41 -59.91 -0.32 -18.36 16 14 C -0.25 -7.07 10.47 -15.06 -0.16 -7.23 16 15 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 16 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 17 N -0.93 -29.29 13.97 55.49 0.78 -28.52 16 18 Si 0.88 22.30 27.74 -169.99 -4.71 17.59 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 22 C -0.11 -1.05 5.81 -25.61 -0.15 -1.20 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.43 7.85 -51.93 -0.41 0.02 16 28 H 0.07 0.67 8.05 -51.93 -0.42 0.26 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.40 4.07 8.46 -40.82 -0.35 3.73 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.36 8.58 5.53 -40.82 -0.23 8.35 16 36 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 37 H 0.07 0.63 7.67 -51.93 -0.40 0.23 16 38 H 0.08 1.00 6.90 -51.93 -0.36 0.64 16 LS Contribution 308.50 15.07 4.65 4.65 Total: -1.00 -33.24 308.50 -7.38 -40.62 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.39 Total: 5.34 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -1.12 Total: -2.03 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.12 Total: -56.60 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.24 -7.38 -40.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134738182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.574 kcal (2) G-P(sol) polarization free energy of solvation -33.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds