Wall clock time and date at job start Sun Mar 29 2020 22:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.01454 * 2 1 4 4 C 1.54265 * 110.03338 * 238.60363 * 2 1 3 5 5 C 1.54890 * 104.19752 * 217.05592 * 4 2 1 6 6 C 1.54890 * 102.74405 * 37.94684 * 5 4 2 7 7 H 1.09000 * 110.48832 * 80.86639 * 6 5 4 8 8 C 1.50702 * 110.48322 * 203.37912 * 6 5 4 9 9 O 1.21283 * 120.00262 * 118.54824 * 8 6 5 10 10 N 1.34770 * 120.00154 * 298.54221 * 8 6 5 11 11 C 1.46502 * 120.00587 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.47591 * 180.02562 * 11 10 8 13 13 N 1.46498 * 109.47059 * 179.97438 * 12 11 10 14 14 C 1.36943 * 119.99752 * 179.72430 * 13 12 11 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31611 * 120.00081 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99814 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47483 * 90.00178 * 18 16 14 20 20 H 1.48498 * 109.47011 * 210.00042 * 18 16 14 21 21 H 1.48502 * 109.47495 * 329.99664 * 18 16 14 22 22 C 1.53873 * 110.06908 * 121.41615 * 2 1 3 23 23 H 1.09002 * 109.46886 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47613 * 299.94064 * 1 2 3 25 25 H 1.09003 * 109.46965 * 59.94183 * 1 2 3 26 26 H 1.09001 * 110.48182 * 98.38200 * 4 2 1 27 27 H 1.09001 * 110.48867 * 335.74168 * 4 2 1 28 28 H 1.09000 * 110.75438 * 279.63325 * 5 4 2 29 29 H 1.08998 * 110.91449 * 156.32843 * 5 4 2 30 30 H 0.97000 * 120.00155 * 0.02562 * 10 8 6 31 31 H 1.09004 * 109.46697 * 60.00211 * 11 10 8 32 32 H 1.09000 * 109.46990 * 300.01042 * 11 10 8 33 33 H 1.09004 * 109.47066 * 60.00267 * 12 11 10 34 34 H 1.08994 * 109.46974 * 300.00415 * 12 11 10 35 35 H 0.97001 * 120.00384 * 0.02562 * 13 12 11 36 36 H 0.97008 * 120.00329 * 179.97438 * 17 16 14 37 37 H 1.09001 * 110.03751 * 0.02562 * 22 2 1 38 38 H 1.08999 * 110.03062 * 238.59453 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7550 -1.2371 5 6 3.3145 -1.4995 -0.7200 6 6 2.8890 -1.9398 0.7028 7 1 2.2812 -2.8435 0.6567 8 6 4.1010 -2.1645 1.5698 9 8 4.2646 -1.4961 2.5685 10 7 5.0032 -3.1083 1.2354 11 6 6.1817 -3.3264 2.0779 12 6 7.0373 -4.4443 1.4787 13 7 8.2160 -4.6619 2.3209 14 6 9.1301 -5.6243 1.9838 15 1 8.9842 -6.2198 1.0947 16 6 10.2441 -5.8344 2.7849 17 7 11.1228 -6.7590 2.4607 18 14 10.4959 -4.8049 4.3231 19 1 9.8470 -5.4746 5.4788 20 1 11.9497 -4.6585 4.5883 21 1 9.8914 -3.4630 4.1252 22 6 2.0581 -0.7534 1.2334 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5129 0.8904 25 1 -0.3633 0.5148 -0.8895 26 1 2.3290 -0.0528 -2.0257 27 1 1.3146 -1.4660 -1.5967 28 1 4.1713 -0.8271 -0.6762 29 1 3.5368 -2.3663 -1.3423 30 1 4.8726 -3.6427 0.4365 31 1 5.8636 -3.6099 3.0812 32 1 6.7672 -2.4084 2.1283 33 1 7.3554 -4.1603 0.4755 34 1 6.4519 -5.3623 1.4280 35 1 8.3469 -4.1273 3.1196 36 1 11.9015 -6.9056 3.0203 37 1 1.2244 -1.1198 1.8324 38 1 2.6874 -0.0948 1.8320 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134738182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:02 Heat of formation + Delta-G solvation = -72.527693 kcal Electronic energy + Delta-G solvation = -16887.779951 eV Core-core repulsion = 14149.413656 eV Total energy + Delta-G solvation = -2738.366295 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.17582 -38.68828 -37.40309 -35.54590 -33.53978 -32.38236 -30.06618 -29.50409 -26.38192 -25.07837 -23.22876 -22.76814 -21.10199 -20.30171 -19.78536 -18.38850 -17.14848 -16.77689 -16.39689 -16.08724 -15.78151 -15.57674 -15.06773 -14.75007 -14.49248 -14.26540 -13.97305 -13.46220 -13.23624 -12.96770 -12.76217 -12.64169 -12.62300 -12.10742 -12.05226 -11.84268 -11.69081 -11.62684 -11.54559 -11.29380 -11.05042 -10.82874 -10.15310 -9.37981 -8.06595 -5.42006 1.38200 1.39733 1.47028 1.61431 2.11434 2.45515 3.25235 3.50263 3.57727 3.74074 3.83474 3.95695 4.17352 4.20460 4.37833 4.43681 4.53328 4.55719 4.59081 4.73113 4.76091 4.97461 5.00141 5.03859 5.07967 5.14643 5.17972 5.31776 5.34968 5.36916 5.45919 5.58871 5.71138 6.16486 6.54148 7.01769 7.23249 7.76368 7.93888 9.14223 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.059748 B = 0.003772 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.522052 B = 7420.996190 C = 7737.349241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.065 0.935 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.106 4.106 7 H 0.126 0.874 8 C 0.513 3.487 9 O -0.589 6.589 10 N -0.711 5.711 11 C 0.121 3.879 12 C 0.151 3.849 13 N -0.760 5.760 14 C -0.238 4.238 15 H 0.064 0.936 16 C -0.059 4.059 17 N -0.980 5.980 18 Si 0.952 3.048 19 H -0.277 1.277 20 H -0.293 1.293 21 H -0.255 1.255 22 C -0.109 4.109 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.417 0.583 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.366 0.634 36 H 0.260 0.740 37 H 0.071 0.929 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.144 12.859 -8.035 27.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.084 0.916 4 C -0.151 4.151 5 C -0.151 4.151 6 C -0.127 4.127 7 H 0.144 0.856 8 C 0.302 3.698 9 O -0.470 6.470 10 N -0.363 5.363 11 C -0.004 4.004 12 C 0.024 3.976 13 N -0.406 5.406 14 C -0.369 4.369 15 H 0.082 0.918 16 C -0.251 4.251 17 N -0.630 5.630 18 Si 0.779 3.221 19 H -0.203 1.203 20 H -0.219 1.219 21 H -0.180 1.180 22 C -0.147 4.147 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.254 0.746 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.199 0.801 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.943 13.159 -7.469 27.483 hybrid contribution 0.846 0.019 0.888 1.227 sum -22.097 13.178 -6.581 26.556 Atomic orbital electron populations 1.21867 0.93870 1.02304 1.01891 1.21761 0.96575 0.99140 0.94132 0.91610 1.22438 0.96533 0.99235 0.96847 1.22534 0.98563 1.01241 0.92802 1.22229 0.93141 1.01888 0.95477 0.85643 1.21296 0.84718 0.78364 0.85466 1.90671 1.77952 1.48869 1.29477 1.45766 1.22857 1.38543 1.29165 1.21214 0.86500 0.98178 0.94489 1.20830 0.86941 0.95757 0.94029 1.42575 1.25021 1.43361 1.29658 1.19018 1.00401 1.10112 1.07371 0.91767 1.25478 0.97021 1.00189 1.02444 1.69862 1.14332 1.37183 1.41601 0.85454 0.76923 0.79645 0.80055 1.20339 1.21937 1.17993 1.22155 0.98746 0.95842 0.97994 0.91934 0.93049 0.91815 0.90648 0.89644 0.92383 0.88632 0.74577 0.92329 0.92520 0.94068 0.93984 0.80092 0.93142 0.91012 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.84 71.98 0.64 -0.89 16 2 C -0.10 -1.33 3.50 -10.07 -0.04 -1.36 16 3 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.11 -1.23 6.36 31.67 0.20 -1.03 16 5 C -0.11 -1.52 6.26 31.89 0.20 -1.32 16 6 C -0.11 -1.82 3.25 -10.46 -0.03 -1.85 16 7 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 8 C 0.51 13.35 7.15 87.66 0.63 13.98 16 9 O -0.59 -20.92 15.46 -3.04 -0.05 -20.97 16 10 N -0.71 -17.14 5.50 -463.06 -2.54 -19.69 16 11 C 0.12 3.79 5.79 86.38 0.50 4.29 16 12 C 0.15 5.41 6.37 86.38 0.55 5.96 16 13 N -0.76 -35.50 5.41 -343.46 -1.86 -37.36 16 14 C -0.24 -13.53 10.47 84.03 0.88 -12.65 16 15 H 0.06 3.92 8.06 -2.91 -0.02 3.90 16 16 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 17 N -0.98 -62.57 13.97 21.65 0.30 -62.27 16 18 Si 0.95 45.88 27.74 68.60 1.90 47.78 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 20 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 21 H -0.26 -11.29 6.52 99.48 0.65 -10.64 16 22 C -0.11 -2.01 5.81 31.32 0.18 -1.83 16 23 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.08 0.70 7.85 -2.39 -0.02 0.69 16 28 H 0.06 0.97 8.05 -2.39 -0.02 0.95 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.42 7.32 8.46 -92.71 -0.78 6.53 16 31 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.37 16.64 5.53 -92.71 -0.51 16.12 16 36 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 37 H 0.07 1.24 7.67 -2.39 -0.02 1.22 16 38 H 0.05 1.30 6.90 -2.39 -0.02 1.29 16 Total: -1.00 -72.16 308.50 1.62 -70.54 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -0.32 Total: 21.71 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 4.17 Total: 0.25 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -4.10 Total: -119.32 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.05 Total: -20.97 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.90 Total: 47.78 kcal Total: -72.16 1.62 -70.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134738182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.987 kcal (2) G-P(sol) polarization free energy of solvation -72.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds