Wall clock time and date at job start Sun Mar 29 2020 22:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.53944 * 2 1 4 4 C 1.54961 * 110.53009 * 122.63084 * 2 1 3 5 5 C 1.54895 * 102.77671 * 156.56398 * 4 2 1 6 6 C 1.54268 * 104.19476 * 322.08719 * 5 4 2 7 7 H 1.09003 * 110.06589 * 264.29593 * 6 5 4 8 8 C 1.50698 * 110.02899 * 142.89394 * 6 5 4 9 9 O 1.21281 * 120.00089 * 242.82696 * 8 6 5 10 10 N 1.34777 * 120.00100 * 62.83346 * 8 6 5 11 11 C 1.46506 * 119.99823 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.47044 * 179.97438 * 11 10 8 13 13 N 1.46498 * 109.47295 * 179.97438 * 12 11 10 14 14 C 1.36934 * 120.00143 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99703 * 359.97438 * 14 13 12 16 16 C 1.38815 * 120.00013 * 179.97438 * 14 13 12 17 17 N 1.31613 * 119.99944 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00033 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47130 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47316 * 119.99887 * 18 16 14 21 21 H 1.48501 * 109.47013 * 240.00074 * 18 16 14 22 22 C 1.53869 * 106.60115 * 23.60777 * 6 5 4 23 23 H 1.08999 * 109.46898 * 182.61072 * 1 2 3 24 24 H 1.09004 * 109.46652 * 302.61144 * 1 2 3 25 25 H 1.08998 * 109.46754 * 62.60871 * 1 2 3 26 26 H 1.09001 * 110.71970 * 38.25675 * 4 2 1 27 27 H 1.08998 * 110.76825 * 274.90043 * 4 2 1 28 28 H 1.08997 * 110.48689 * 203.40743 * 5 4 2 29 29 H 1.09001 * 110.48394 * 80.76190 * 5 4 2 30 30 H 0.96996 * 120.00339 * 359.97438 * 10 8 6 31 31 H 1.09003 * 109.46876 * 299.99832 * 11 10 8 32 32 H 1.08992 * 109.47256 * 59.99959 * 11 10 8 33 33 H 1.08996 * 109.47218 * 300.00112 * 12 11 10 34 34 H 1.09004 * 109.47350 * 59.99852 * 12 11 10 35 35 H 0.96996 * 119.99769 * 359.97438 * 13 12 11 36 36 H 0.97003 * 120.00226 * 179.97438 * 17 16 14 37 37 H 1.09002 * 110.03268 * 119.28653 * 22 6 5 38 38 H 1.08995 * 110.03391 * 240.66959 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0735 -0.7825 1.2221 5 6 3.4916 -1.1994 0.7590 6 6 3.3163 -1.5414 -0.7350 7 1 3.1686 -2.6144 -0.8582 8 6 4.5276 -1.0949 -1.5123 9 8 4.4174 -0.2477 -2.3732 10 7 5.7335 -1.6371 -1.2510 11 6 6.9111 -1.2033 -2.0072 12 6 8.1421 -1.9684 -1.5172 13 7 9.3195 -1.5352 -2.2736 14 6 10.5447 -2.0861 -2.0083 15 1 10.6430 -2.8398 -1.2409 16 6 11.6602 -1.6759 -2.7254 17 7 11.5401 -0.7578 -3.6608 18 14 13.3317 -2.4270 -2.3629 19 1 13.1989 -3.4283 -1.2743 20 1 13.8521 -3.0902 -3.5854 21 1 14.2731 -1.3590 -1.9403 22 6 2.0699 -0.7788 -1.2173 23 1 -0.3633 -1.0266 0.0468 24 1 -0.3633 0.5539 0.8657 25 1 -0.3633 0.4728 -0.9125 26 1 1.4590 -1.6603 1.4223 27 1 2.1275 -0.1390 2.1002 28 1 3.8322 -2.0740 1.3132 29 1 4.1913 -0.3726 0.8815 30 1 5.8219 -2.3144 -0.5624 31 1 6.7562 -1.4039 -3.0673 32 1 7.0650 -0.1346 -1.8583 33 1 8.2967 -1.7675 -0.4571 34 1 7.9884 -3.0373 -1.6657 35 1 9.2310 -0.8586 -2.9630 36 1 12.3197 -0.4709 -4.1617 37 1 2.3412 -0.0858 -2.0137 38 1 1.3173 -1.4816 -1.5746 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134738183.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:04 Heat of formation + Delta-G solvation = -52.761179 kcal Electronic energy + Delta-G solvation = -16852.186664 eV Core-core repulsion = 14114.677509 eV Total energy + Delta-G solvation = -2737.509155 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.12956 -37.68077 -35.63200 -33.84403 -31.90553 -30.99977 -29.09372 -27.73820 -25.39009 -23.59849 -21.86893 -21.40109 -20.38186 -19.34249 -17.46244 -17.15822 -15.79761 -15.44255 -15.16280 -14.75735 -14.52886 -13.85683 -13.81051 -13.44925 -13.21747 -13.10825 -12.87480 -12.20363 -11.84256 -11.47790 -11.35353 -11.10817 -11.05301 -10.96662 -10.85710 -10.82886 -10.75362 -10.59388 -10.08614 -9.83290 -9.57424 -8.98222 -8.80326 -6.99691 -5.80025 -3.10737 2.77443 3.31684 3.41792 3.47407 3.49643 4.29841 4.35695 4.53563 4.59369 4.94453 5.05537 5.16075 5.24774 5.34964 5.38770 5.41346 5.50113 5.55212 5.58577 5.69703 5.76394 5.78962 5.81564 5.94188 5.97341 5.99467 6.15856 6.20272 6.27091 6.52421 6.70978 6.77384 7.65759 7.67133 8.36499 8.38917 9.48889 10.03882 10.38651 11.42671 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.069111 B = 0.003497 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.050907 B = 8004.345823 C = 8243.792309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.075 0.925 4 C -0.119 4.119 5 C -0.116 4.116 6 C -0.113 4.113 7 H 0.097 0.903 8 C 0.514 3.486 9 O -0.542 6.542 10 N -0.723 5.723 11 C 0.110 3.890 12 C 0.145 3.855 13 N -0.730 5.730 14 C -0.243 4.243 15 H 0.072 0.928 16 C -0.013 4.013 17 N -0.931 5.931 18 Si 0.910 3.090 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.115 4.115 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.399 0.601 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.090 0.910 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.006 -2.004 9.860 23.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.156 4.156 5 C -0.154 4.154 6 C -0.134 4.134 7 H 0.115 0.885 8 C 0.300 3.700 9 O -0.419 6.419 10 N -0.374 5.374 11 C -0.014 4.014 12 C 0.017 3.983 13 N -0.375 5.375 14 C -0.374 4.374 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.741 3.259 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.153 4.153 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.233 0.767 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.220 0.780 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.927 -1.492 9.291 22.946 hybrid contribution 1.097 -0.550 0.220 1.247 sum -19.830 -2.043 9.512 22.088 Atomic orbital electron populations 1.21791 0.94995 1.01652 1.01599 1.21997 0.95398 0.99609 0.94680 0.90687 1.22588 0.95534 0.99867 0.97632 1.22357 0.98082 1.01876 0.93060 1.21935 0.93860 1.01818 0.95832 0.88525 1.20561 0.84459 0.81594 0.83389 1.90672 1.85426 1.32385 1.33401 1.45940 1.07953 1.43159 1.40313 1.21573 0.84074 0.99673 0.96059 1.20753 0.86261 0.95994 0.95311 1.42206 1.02876 1.48846 1.43586 1.19241 0.85014 1.17293 1.15896 0.90982 1.24786 0.98150 0.99302 0.98657 1.69677 1.29336 1.33161 1.25694 0.86077 0.84191 0.78256 0.77387 1.20504 1.21763 1.21767 1.22240 0.94770 0.99413 0.98839 0.92678 0.92811 0.92634 0.91232 0.91422 0.90808 0.90973 0.76720 0.91370 0.91390 0.95827 0.95845 0.78010 0.93400 0.89176 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.12 37.16 0.34 -0.69 16 2 C -0.10 -0.86 3.46 -88.92 -0.31 -1.17 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.12 -0.90 6.33 -24.70 -0.16 -1.06 16 5 C -0.12 -0.99 6.31 -25.07 -0.16 -1.15 16 6 C -0.11 -1.15 3.30 -90.66 -0.30 -1.45 16 7 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 8 C 0.51 7.40 6.99 -10.99 -0.08 7.32 16 9 O -0.54 -10.05 15.21 5.56 0.08 -9.97 16 10 N -0.72 -10.02 5.50 -60.29 -0.33 -10.36 16 11 C 0.11 1.93 5.79 -4.04 -0.02 1.91 16 12 C 0.15 2.87 6.37 -4.04 -0.03 2.85 16 13 N -0.73 -18.78 5.60 -59.91 -0.34 -19.11 16 14 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 15 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 18 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 C -0.11 -1.18 5.97 -25.61 -0.15 -1.33 16 23 H 0.05 0.36 8.12 -51.93 -0.42 -0.06 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.46 8.04 -51.93 -0.42 0.05 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.71 7.85 -51.93 -0.41 0.31 16 30 H 0.40 4.37 8.47 -40.82 -0.35 4.02 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.39 10.52 7.67 -40.82 -0.31 10.21 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.09 1.17 6.39 -51.93 -0.33 0.84 16 38 H 0.07 0.60 7.84 -51.93 -0.41 0.19 16 LS Contribution 311.32 15.07 4.69 4.69 Total: -1.00 -32.58 311.32 -7.72 -40.30 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.42 Total: 7.06 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -1.11 Total: -2.24 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.06 Total: -57.20 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.58 -7.72 -40.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134738183.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.466 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds