Wall clock time and date at job start Sun Mar 29 2020 22:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.53961 * 2 1 4 4 C 1.54268 * 110.48862 * 237.38385 * 2 1 3 5 5 C 1.53876 * 106.59992 * 217.71453 * 4 2 1 6 6 C 1.54268 * 106.59607 * 0.02562 * 5 4 2 7 7 H 1.09003 * 110.48471 * 264.93239 * 6 5 4 8 8 C 1.50703 * 110.48320 * 142.28923 * 6 5 4 9 9 O 1.21277 * 120.00044 * 245.21915 * 8 6 5 10 10 N 1.34771 * 119.99802 * 65.22391 * 8 6 5 11 11 C 1.46507 * 119.99780 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.47114 * 179.97438 * 11 10 8 13 13 N 1.46498 * 109.47150 * 180.02562 * 12 11 10 14 14 C 1.36937 * 119.99940 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00365 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99795 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00112 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00073 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47389 * 89.99655 * 18 16 14 20 20 H 1.48501 * 109.47195 * 210.00143 * 18 16 14 21 21 H 1.48506 * 109.46757 * 329.99595 * 18 16 14 22 22 C 1.54882 * 104.19992 * 23.60931 * 6 5 4 23 23 H 1.09001 * 109.47610 * 297.38704 * 1 2 3 24 24 H 1.09007 * 109.47040 * 57.38830 * 1 2 3 25 25 H 1.09000 * 109.47627 * 177.38607 * 1 2 3 26 26 H 1.08998 * 110.02839 * 337.00463 * 4 2 1 27 27 H 1.09000 * 110.02607 * 98.37950 * 4 2 1 28 28 H 1.08994 * 110.02975 * 119.28475 * 5 4 2 29 29 H 1.09000 * 110.03018 * 240.67159 * 5 4 2 30 30 H 0.97002 * 120.00731 * 359.97438 * 10 8 6 31 31 H 1.08997 * 109.47320 * 300.00003 * 11 10 8 32 32 H 1.09004 * 109.46928 * 60.00351 * 11 10 8 33 33 H 1.08997 * 109.47168 * 300.00265 * 12 11 10 34 34 H 1.08998 * 109.47446 * 60.00259 * 12 11 10 35 35 H 0.97000 * 120.00257 * 359.97438 * 13 12 11 36 36 H 0.97000 * 120.00242 * 180.02562 * 17 16 14 37 37 H 1.08994 * 110.76048 * 203.74464 * 22 6 5 38 38 H 1.09004 * 110.75771 * 80.36858 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0699 -0.7789 -1.2172 5 6 3.3166 -1.5406 -0.7339 6 6 3.4902 -1.1985 0.7603 7 1 4.1892 -0.3711 0.8835 8 6 3.9615 -2.4074 1.5268 9 8 3.2468 -2.9077 2.3693 10 7 5.1771 -2.9325 1.2761 11 6 5.6355 -4.1074 2.0217 12 6 7.0366 -4.4978 1.5472 13 7 7.4947 -5.6731 2.2922 14 6 8.7298 -6.2067 2.0375 15 1 9.3661 -5.7614 1.2870 16 6 9.1636 -7.3206 2.7431 17 7 8.3880 -7.8636 3.6574 18 14 10.8488 -8.0481 2.3961 19 1 11.8565 -7.4056 3.2777 20 1 10.8208 -9.5093 2.6591 21 1 11.2087 -7.8076 0.9755 22 6 2.0715 -0.7828 1.2223 23 1 -0.3634 0.4727 0.9125 24 1 -0.3633 0.5539 -0.8657 25 1 -0.3634 -1.0266 -0.0469 26 1 1.3175 -1.4822 -1.5740 27 1 2.3404 -0.0858 -2.0138 28 1 3.1692 -2.6136 -0.8562 29 1 4.1927 -1.2177 -1.2963 30 1 5.7487 -2.5325 0.6021 31 1 5.6638 -3.8740 3.0860 32 1 4.9497 -4.9371 1.8497 33 1 7.0079 -4.7313 0.4829 34 1 7.7227 -3.6684 1.7187 35 1 6.9234 -6.0728 2.9666 36 1 8.6913 -8.6417 4.1508 37 1 2.1242 -0.1393 2.1004 38 1 1.4575 -1.6610 1.4219 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134738185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:07 Heat of formation + Delta-G solvation = -53.524505 kcal Electronic energy + Delta-G solvation = -16819.143799 eV Core-core repulsion = 14081.601544 eV Total energy + Delta-G solvation = -2737.542255 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.06617 -37.75103 -35.62368 -33.82595 -31.90574 -31.00507 -29.12318 -27.73756 -25.42940 -23.60697 -21.92863 -21.38570 -20.09751 -19.62342 -17.35215 -16.92680 -16.21454 -15.63196 -15.10421 -14.57629 -14.19287 -14.07317 -13.74946 -13.37652 -13.29084 -13.14223 -12.89073 -12.36838 -11.84576 -11.45685 -11.31565 -11.10601 -11.10015 -10.97276 -10.84773 -10.82281 -10.79244 -10.61711 -10.11868 -9.82744 -9.57079 -8.97312 -8.79487 -6.99458 -5.79620 -3.10398 2.77665 3.31856 3.42245 3.47402 3.49199 4.28103 4.32307 4.51759 4.59446 4.95676 5.05435 5.14308 5.18860 5.32378 5.36983 5.39850 5.50316 5.55402 5.56841 5.67908 5.77458 5.79293 5.80048 5.92169 5.97641 6.04595 6.07635 6.16856 6.25688 6.52100 6.71371 6.77451 7.65551 7.67628 8.37038 8.39502 9.49207 10.04228 10.38989 11.43016 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.069225 B = 0.003467 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.381257 B = 8073.750550 C = 8313.257212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.119 4.119 5 C -0.115 4.115 6 C -0.115 4.115 7 H 0.099 0.901 8 C 0.516 3.484 9 O -0.542 6.542 10 N -0.723 5.723 11 C 0.110 3.890 12 C 0.145 3.855 13 N -0.730 5.730 14 C -0.244 4.244 15 H 0.072 0.928 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C -0.100 4.100 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.399 0.601 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.386 0.614 36 H 0.257 0.743 37 H 0.069 0.931 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.522 17.194 -9.781 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.092 0.908 4 C -0.157 4.157 5 C -0.153 4.153 6 C -0.136 4.136 7 H 0.117 0.883 8 C 0.301 3.699 9 O -0.419 6.419 10 N -0.375 5.375 11 C -0.014 4.014 12 C 0.017 3.983 13 N -0.375 5.375 14 C -0.375 4.375 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.138 4.138 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.233 0.767 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.220 0.780 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.867 16.765 -9.236 23.064 hybrid contribution 1.170 -0.421 -0.233 1.265 sum -11.697 16.344 -9.469 22.217 Atomic orbital electron populations 1.21795 0.94864 1.01976 1.01513 1.22001 0.95718 0.99165 0.94885 0.90760 1.22209 0.97038 0.98819 0.97594 1.22113 0.98738 1.01159 0.93288 1.22186 0.99345 0.96302 0.95807 0.88309 1.20521 0.81194 0.84987 0.83150 1.90697 1.54899 1.62299 1.34014 1.45973 1.17837 1.31988 1.41653 1.21571 0.96661 0.86902 0.96249 1.20752 0.90954 0.91189 0.95420 1.42199 1.18639 1.31221 1.45444 1.19195 0.92710 1.08501 1.17109 0.91036 1.24785 0.98654 0.98584 0.98844 1.69669 1.36741 1.24554 1.26934 0.86145 0.83746 0.78321 0.77675 1.21620 1.21677 1.20701 1.22455 0.93798 1.00467 0.97065 0.92610 0.92815 0.92470 0.91494 0.91693 0.91197 0.91005 0.76736 0.91375 0.91396 0.95839 0.95847 0.78005 0.93349 0.91271 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.14 37.16 0.34 -0.70 16 2 C -0.10 -0.78 3.46 -88.94 -0.31 -1.09 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.12 -0.91 6.37 -25.61 -0.16 -1.07 16 5 C -0.12 -0.99 6.35 -25.61 -0.16 -1.15 16 6 C -0.11 -1.17 3.25 -90.11 -0.29 -1.46 16 7 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 8 C 0.52 7.43 6.99 -10.99 -0.08 7.36 16 9 O -0.54 -10.12 15.72 5.56 0.09 -10.03 16 10 N -0.72 -10.06 5.54 -60.29 -0.33 -10.39 16 11 C 0.11 1.94 5.79 -4.04 -0.02 1.91 16 12 C 0.15 2.88 6.37 -4.04 -0.03 2.85 16 13 N -0.73 -18.80 5.60 -59.91 -0.34 -19.14 16 14 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 15 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 18 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 C -0.10 -1.01 5.37 -24.73 -0.13 -1.15 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 26 H 0.07 0.52 7.79 -51.93 -0.40 0.11 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.70 7.83 -51.93 -0.41 0.29 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.40 4.37 8.47 -40.82 -0.35 4.03 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.39 10.53 7.67 -40.82 -0.31 10.22 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.01 7.38 -51.93 -0.38 0.63 16 LS Contribution 312.30 15.07 4.71 4.71 Total: -1.00 -32.66 312.30 -7.74 -40.40 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.47 Total: 6.83 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -1.09 Total: -1.98 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.05 Total: -57.30 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.66 -7.74 -40.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134738185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.123 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds