Wall clock time and date at job start Sun Mar 29 2020 22:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 110.53961 * 2 1 4 4 C 1.54268 * 110.48862 * 237.38385 * 2 1 3 5 5 C 1.53876 * 106.59992 * 217.71453 * 4 2 1 6 6 C 1.54268 * 106.59607 * 0.02562 * 5 4 2 7 7 H 1.09003 * 110.48471 * 264.93239 * 6 5 4 8 8 C 1.50703 * 110.48320 * 142.28923 * 6 5 4 9 9 O 1.21277 * 120.00044 * 245.21915 * 8 6 5 10 10 N 1.34771 * 119.99802 * 65.22391 * 8 6 5 11 11 C 1.46507 * 119.99780 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.47114 * 179.97438 * 11 10 8 13 13 N 1.46498 * 109.47150 * 180.02562 * 12 11 10 14 14 C 1.36937 * 119.99940 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00365 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99795 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00112 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00073 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47389 * 89.99655 * 18 16 14 20 20 H 1.48501 * 109.47195 * 210.00143 * 18 16 14 21 21 H 1.48506 * 109.46757 * 329.99595 * 18 16 14 22 22 C 1.54882 * 104.19992 * 23.60931 * 6 5 4 23 23 H 1.09001 * 109.47610 * 297.38704 * 1 2 3 24 24 H 1.09007 * 109.47040 * 57.38830 * 1 2 3 25 25 H 1.09000 * 109.47627 * 177.38607 * 1 2 3 26 26 H 1.08998 * 110.02839 * 337.00463 * 4 2 1 27 27 H 1.09000 * 110.02607 * 98.37950 * 4 2 1 28 28 H 1.08994 * 110.02975 * 119.28475 * 5 4 2 29 29 H 1.09000 * 110.03018 * 240.67159 * 5 4 2 30 30 H 0.97002 * 120.00731 * 359.97438 * 10 8 6 31 31 H 1.08997 * 109.47320 * 300.00003 * 11 10 8 32 32 H 1.09004 * 109.46928 * 60.00351 * 11 10 8 33 33 H 1.08997 * 109.47168 * 300.00265 * 12 11 10 34 34 H 1.08998 * 109.47446 * 60.00259 * 12 11 10 35 35 H 0.97000 * 120.00257 * 359.97438 * 13 12 11 36 36 H 0.97000 * 120.00242 * 180.02562 * 17 16 14 37 37 H 1.08994 * 110.76048 * 203.74464 * 22 6 5 38 38 H 1.09004 * 110.75771 * 80.36858 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0699 -0.7789 -1.2172 5 6 3.3166 -1.5406 -0.7339 6 6 3.4902 -1.1985 0.7603 7 1 4.1892 -0.3711 0.8835 8 6 3.9615 -2.4074 1.5268 9 8 3.2468 -2.9077 2.3693 10 7 5.1771 -2.9325 1.2761 11 6 5.6355 -4.1074 2.0217 12 6 7.0366 -4.4978 1.5472 13 7 7.4947 -5.6731 2.2922 14 6 8.7298 -6.2067 2.0375 15 1 9.3661 -5.7614 1.2870 16 6 9.1636 -7.3206 2.7431 17 7 8.3880 -7.8636 3.6574 18 14 10.8488 -8.0481 2.3961 19 1 11.8565 -7.4056 3.2777 20 1 10.8208 -9.5093 2.6591 21 1 11.2087 -7.8076 0.9755 22 6 2.0715 -0.7828 1.2223 23 1 -0.3634 0.4727 0.9125 24 1 -0.3633 0.5539 -0.8657 25 1 -0.3634 -1.0266 -0.0469 26 1 1.3175 -1.4822 -1.5740 27 1 2.3404 -0.0858 -2.0138 28 1 3.1692 -2.6136 -0.8562 29 1 4.1927 -1.2177 -1.2963 30 1 5.7487 -2.5325 0.6021 31 1 5.6638 -3.8740 3.0860 32 1 4.9497 -4.9371 1.8497 33 1 7.0079 -4.7313 0.4829 34 1 7.7227 -3.6684 1.7187 35 1 6.9234 -6.0728 2.9666 36 1 8.6913 -8.6417 4.1508 37 1 2.1242 -0.1393 2.1004 38 1 1.4575 -1.6610 1.4219 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134738185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:07 Heat of formation + Delta-G solvation = -76.146321 kcal Electronic energy + Delta-G solvation = -16820.124754 eV Core-core repulsion = 14081.601544 eV Total energy + Delta-G solvation = -2738.523210 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.15421 -38.64625 -37.26736 -35.50719 -33.30036 -32.32248 -29.95551 -29.28111 -26.41615 -25.32389 -23.27574 -22.69933 -20.82978 -20.62034 -19.32729 -18.04378 -17.07674 -16.99828 -16.49261 -16.37705 -15.47832 -15.18782 -15.08012 -14.74195 -14.48925 -14.29931 -13.97485 -13.19666 -13.07363 -13.04196 -12.68531 -12.55099 -12.52134 -12.13136 -12.07437 -11.87105 -11.74689 -11.72036 -11.46797 -11.25255 -11.00335 -10.80606 -10.15038 -9.08455 -7.98029 -5.29880 1.47874 1.50530 1.58972 1.62042 2.12234 2.57546 3.36196 3.49297 3.59217 3.79483 3.99744 4.11476 4.19119 4.26000 4.37097 4.44327 4.50761 4.56941 4.60931 4.72647 4.77465 4.90363 5.01140 5.04275 5.11284 5.14103 5.18844 5.29385 5.36372 5.38383 5.40985 5.48262 5.60463 6.22641 6.55501 7.24718 7.28700 8.00287 8.23422 9.25794 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.069225 B = 0.003467 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.381257 B = 8073.750550 C = 8313.257212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.092 0.908 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.107 4.107 7 H 0.128 0.872 8 C 0.512 3.488 9 O -0.591 6.591 10 N -0.711 5.711 11 C 0.126 3.874 12 C 0.150 3.850 13 N -0.748 5.748 14 C -0.249 4.249 15 H 0.084 0.916 16 C -0.078 4.078 17 N -0.972 5.972 18 Si 0.981 3.019 19 H -0.285 1.285 20 H -0.296 1.296 21 H -0.265 1.265 22 C -0.105 4.105 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.417 0.583 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.373 0.627 36 H 0.253 0.747 37 H 0.068 0.932 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.663 19.197 -11.864 25.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.110 0.890 4 C -0.155 4.155 5 C -0.151 4.151 6 C -0.128 4.128 7 H 0.146 0.854 8 C 0.300 3.700 9 O -0.471 6.471 10 N -0.363 5.363 11 C 0.001 3.999 12 C 0.023 3.977 13 N -0.392 5.392 14 C -0.380 4.380 15 H 0.102 0.898 16 C -0.270 4.270 17 N -0.622 5.622 18 Si 0.809 3.191 19 H -0.212 1.212 20 H -0.223 1.223 21 H -0.189 1.189 22 C -0.143 4.143 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.254 0.746 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.205 0.795 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.993 18.830 -11.384 25.060 hybrid contribution 0.840 -0.986 0.404 1.356 sum -11.154 17.844 -10.980 23.735 Atomic orbital electron populations 1.21802 0.94649 1.01567 1.02208 1.21993 0.95932 0.99614 0.93547 0.89002 1.22221 0.96341 0.98969 0.97938 1.22145 1.00428 1.00332 0.92150 1.22257 0.99659 0.94723 0.96147 0.85438 1.21377 0.80446 0.85626 0.82546 1.90680 1.56170 1.63959 1.36299 1.45798 1.18175 1.30774 1.41549 1.21134 0.95246 0.87789 0.95694 1.20843 0.91978 0.89576 0.95283 1.42450 1.18107 1.32813 1.45806 1.19665 0.93506 1.08268 1.16608 0.89823 1.25700 1.02659 0.99498 0.99142 1.69842 1.38796 1.25144 1.28437 0.85039 0.79036 0.76804 0.78234 1.21226 1.22291 1.18940 1.22466 0.93646 0.99728 0.98430 0.92603 0.91362 0.93556 0.92021 0.89579 0.93007 0.88491 0.74591 0.93115 0.93237 0.94437 0.94389 0.79524 0.93873 0.91329 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.14 71.98 0.66 -1.23 16 2 C -0.09 -1.24 3.46 -9.71 -0.03 -1.27 16 3 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.12 -1.47 6.37 31.32 0.20 -1.27 16 5 C -0.11 -1.65 6.35 31.32 0.20 -1.46 16 6 C -0.11 -1.97 3.25 -10.47 -0.03 -2.00 16 7 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 8 C 0.51 14.51 6.99 87.66 0.61 15.12 16 9 O -0.59 -22.71 15.72 -3.02 -0.05 -22.76 16 10 N -0.71 -18.95 5.54 -463.05 -2.57 -21.51 16 11 C 0.13 4.47 5.79 86.38 0.50 4.97 16 12 C 0.15 5.80 6.37 86.38 0.55 6.35 16 13 N -0.75 -38.65 5.60 -343.46 -1.92 -40.57 16 14 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 15 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 16 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 17 N -0.97 -60.51 13.06 21.65 0.28 -60.23 16 18 Si 0.98 45.89 29.55 68.60 2.03 47.91 16 19 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 C -0.10 -2.04 5.37 31.89 0.17 -1.87 16 23 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.05 0.69 8.08 -2.39 -0.02 0.67 16 26 H 0.06 0.85 7.79 -2.39 -0.02 0.83 16 27 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.96 7.83 -2.39 -0.02 0.94 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.42 8.08 8.47 -92.71 -0.79 7.29 16 31 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 1.93 8.14 -2.38 -0.02 1.92 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.37 20.89 7.67 -92.71 -0.71 20.18 16 36 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 1.36 7.38 -2.38 -0.02 1.35 16 Total: -1.00 -71.27 312.30 1.44 -69.82 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: -0.46 Total: 27.06 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 4.13 Total: 0.28 kcal Atomic # 7 Polarization: -118.11 SS G_CDS: -4.21 Total: -122.32 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.05 Total: -22.76 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -71.27 1.44 -69.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134738185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.324 kcal (2) G-P(sol) polarization free energy of solvation -71.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds