Wall clock time and date at job start Sun Mar 29 2020 22:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 115.54941 * 2 1 4 4 C 1.53001 * 117.51367 * 214.30050 * 2 1 3 5 5 C 1.52994 * 117.49873 * 145.67364 * 2 1 3 6 6 H 1.09000 * 117.49738 * 215.02302 * 5 2 1 7 7 C 1.53005 * 117.50097 * 0.02562 * 5 2 1 8 8 C 1.50705 * 109.47094 * 185.00041 * 7 5 2 9 9 O 1.21275 * 119.99885 * 359.97438 * 8 7 5 10 10 N 1.34770 * 119.99682 * 180.02562 * 8 7 5 11 11 C 1.46508 * 119.99973 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46869 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.46691 * 179.97438 * 12 11 10 14 14 N 1.46501 * 109.47168 * 179.97438 * 13 12 11 15 15 C 1.36932 * 119.99845 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00437 * 0.02562 * 15 14 13 17 17 C 1.38811 * 119.99901 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00372 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99955 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 269.99982 * 19 17 15 21 21 H 1.48503 * 109.47399 * 29.99472 * 19 17 15 22 22 H 1.48498 * 109.47295 * 150.00079 * 19 17 15 23 23 H 1.09001 * 109.47117 * 274.32778 * 1 2 3 24 24 H 1.09003 * 109.47379 * 34.32792 * 1 2 3 25 25 H 1.09004 * 109.47252 * 154.33000 * 1 2 3 26 26 H 1.09003 * 117.49229 * 145.02805 * 4 2 1 27 27 H 1.08994 * 117.50364 * 0.02562 * 4 2 1 28 28 H 1.08996 * 109.46821 * 65.00347 * 7 5 2 29 29 H 1.08999 * 109.46922 * 305.00366 * 7 5 2 30 30 H 0.96999 * 120.00308 * 359.97438 * 10 8 7 31 31 H 1.08996 * 109.46708 * 59.99551 * 11 10 8 32 32 H 1.09002 * 109.46259 * 299.99251 * 11 10 8 33 33 H 1.08996 * 109.47396 * 59.99963 * 12 11 10 34 34 H 1.08994 * 109.47171 * 299.99013 * 12 11 10 35 35 H 1.09001 * 109.47340 * 59.99584 * 13 12 11 36 36 H 1.09000 * 109.46913 * 299.99874 * 13 12 11 37 37 H 0.97000 * 119.99725 * 0.02562 * 14 13 12 38 38 H 0.96993 * 120.00251 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2368 -1.1210 -0.7647 5 6 2.2364 -1.1207 0.7653 6 1 3.1711 -0.8746 1.2691 7 6 1.3588 -2.1561 1.4715 8 6 2.2301 -3.0966 2.2638 9 8 3.4343 -2.9531 2.2631 10 7 1.6710 -4.0976 2.9721 11 6 2.5179 -5.0115 3.7427 12 6 1.6403 -6.0477 4.4478 13 6 2.5249 -7.0025 5.2521 14 7 1.6846 -7.9943 5.9277 15 6 2.2597 -8.9593 6.7109 16 1 3.3326 -8.9889 6.8308 17 6 1.4635 -9.8987 7.3515 18 7 2.0161 -10.8265 8.1039 19 14 -0.3923 -9.8470 7.1446 20 1 -0.9845 -8.9894 8.2025 21 1 -0.7263 -9.2883 5.8099 22 1 -0.9414 -11.2221 7.2572 23 1 -0.3633 0.0776 1.0247 24 1 -0.3634 0.8487 -0.5795 25 1 -0.3634 -0.9263 -0.4452 26 1 3.1720 -0.8750 -1.2678 27 1 1.6119 -1.8585 -1.2683 28 1 0.7951 -2.7214 0.7294 29 1 0.6672 -1.6483 2.1437 30 1 0.7079 -4.2125 2.9723 31 1 3.0810 -4.4460 4.4851 32 1 3.2100 -5.5190 3.0707 33 1 1.0776 -6.6131 3.7050 34 1 0.9480 -5.5406 5.1196 35 1 3.0880 -6.4374 5.9948 36 1 3.2171 -7.5096 4.5799 37 1 0.7210 -7.9679 5.8197 38 1 1.4598 -11.4832 8.5512 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165874930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:51 Heat of formation + Delta-G solvation = -19.019273 kcal Electronic energy + Delta-G solvation = -16335.531006 eV Core-core repulsion = 13599.485010 eV Total energy + Delta-G solvation = -2736.045996 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.97551 -38.03807 -36.13777 -34.46087 -32.11633 -30.72304 -29.56357 -28.40516 -25.32507 -22.47569 -21.83000 -21.33487 -20.71221 -19.49025 -17.72864 -17.21684 -16.14435 -15.91012 -15.52395 -14.77705 -14.47045 -14.16675 -13.92682 -13.57942 -13.24307 -13.05741 -12.82103 -12.57821 -12.20228 -12.02954 -11.83468 -11.54480 -11.20369 -11.04781 -10.84922 -10.71885 -10.23425 -10.19304 -10.15344 -9.83543 -9.60466 -9.10900 -8.91640 -7.25837 -5.78002 -3.14221 2.56793 3.05292 3.35140 3.37444 3.43360 3.48471 4.31934 4.45317 4.52841 4.57321 4.72561 4.93501 4.94535 5.12176 5.19186 5.23006 5.32797 5.43404 5.46874 5.49600 5.52569 5.58974 5.67501 5.79676 5.91743 5.93019 5.95710 6.03106 6.13781 6.39363 6.67501 6.70639 7.41713 7.98103 8.15079 8.40820 9.19461 9.91509 10.11052 11.40398 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.054237 B = 0.003200 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.129114 B = 8747.654586 C = 9148.381726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.156 4.156 3 H 0.104 0.896 4 C -0.174 4.174 5 C -0.136 4.136 6 H 0.118 0.882 7 C -0.110 4.110 8 C 0.512 3.488 9 O -0.540 6.540 10 N -0.731 5.731 11 C 0.122 3.878 12 C -0.141 4.141 13 C 0.160 3.840 14 N -0.757 5.757 15 C -0.246 4.246 16 H 0.091 0.909 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.887 3.113 20 H -0.284 1.284 21 H -0.278 1.278 22 H -0.291 1.291 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.400 0.600 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.360 0.640 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 21.204 -16.789 27.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.174 4.174 3 H 0.122 0.878 4 C -0.211 4.211 5 C -0.154 4.154 6 H 0.136 0.864 7 C -0.150 4.150 8 C 0.298 3.702 9 O -0.417 6.417 10 N -0.383 5.383 11 C -0.002 4.002 12 C -0.180 4.180 13 C 0.032 3.968 14 N -0.403 5.403 15 C -0.376 4.376 16 H 0.109 0.891 17 C -0.193 4.193 18 N -0.582 5.582 19 Si 0.717 3.283 20 H -0.211 1.211 21 H -0.204 1.204 22 H -0.217 1.217 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.234 0.766 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.193 0.807 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.386 21.151 -16.660 27.279 hybrid contribution -1.800 -0.231 -0.041 1.815 sum -6.186 20.920 -16.701 27.474 Atomic orbital electron populations 1.21369 0.92891 1.01983 1.01878 1.22424 0.95356 0.94596 1.05075 0.87809 1.23169 1.02484 1.01346 0.94131 1.22132 1.01160 0.98303 0.93838 0.86400 1.21194 0.98014 0.96095 0.99650 1.20587 0.89058 0.81223 0.79347 1.90696 1.15192 1.72425 1.63389 1.46101 1.10898 1.31269 1.49993 1.21335 0.93375 0.90662 0.94820 1.21991 0.99234 0.97055 0.99691 1.20502 0.92834 0.89575 0.93854 1.42689 1.04522 1.34443 1.58623 1.19076 0.94063 1.04405 1.20012 0.89140 1.24695 0.97505 0.97621 0.99456 1.69702 1.34318 1.18724 1.35442 0.86509 0.87143 0.76973 0.77643 1.21066 1.20399 1.21694 0.92097 0.92202 0.92468 0.88796 0.88829 0.88876 0.88514 0.76639 0.91224 0.91246 0.91381 0.91357 0.95164 0.95222 0.80697 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 9.19 37.16 0.34 -0.36 16 2 C -0.16 -1.10 6.41 -90.62 -0.58 -1.68 16 3 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.17 -1.36 9.82 -26.73 -0.26 -1.62 16 5 C -0.14 -1.21 5.41 -90.62 -0.49 -1.70 16 6 H 0.12 1.29 7.31 -51.93 -0.38 0.91 16 7 C -0.11 -0.88 5.06 -27.88 -0.14 -1.02 16 8 C 0.51 6.03 7.83 -10.99 -0.09 5.94 16 9 O -0.54 -8.64 15.56 5.56 0.09 -8.56 16 10 N -0.73 -7.80 5.56 -60.29 -0.33 -8.13 16 11 C 0.12 1.58 5.67 -4.04 -0.02 1.55 16 12 C -0.14 -1.99 5.44 -26.73 -0.15 -2.14 16 13 C 0.16 3.05 6.26 -4.04 -0.03 3.02 16 14 N -0.76 -18.06 5.41 -59.91 -0.32 -18.39 16 15 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 16 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 17 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 18 N -0.93 -29.56 13.97 55.49 0.78 -28.78 16 19 Si 0.89 22.01 27.74 -169.99 -4.71 17.30 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H 0.06 0.32 7.83 -51.93 -0.41 -0.09 16 24 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 26 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 0.66 7.94 -51.93 -0.41 0.25 16 28 H 0.09 0.60 7.87 -51.93 -0.41 0.19 16 29 H 0.10 0.61 7.77 -51.93 -0.40 0.21 16 30 H 0.40 3.13 8.47 -40.82 -0.35 2.79 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.36 8.25 5.53 -40.82 -0.23 8.03 16 38 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -33.93 316.31 -7.80 -41.73 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.39 Total: 5.28 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -1.67 Total: -5.22 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.12 Total: -55.30 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.93 -7.80 -41.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165874930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.712 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds