Wall clock time and date at job start Sun Mar 29 2020 22:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 115.54941 * 2 1 4 4 C 1.53001 * 117.51367 * 214.30050 * 2 1 3 5 5 C 1.52994 * 117.49873 * 145.67364 * 2 1 3 6 6 H 1.09000 * 117.49738 * 215.02302 * 5 2 1 7 7 C 1.53005 * 117.50097 * 0.02562 * 5 2 1 8 8 C 1.50705 * 109.47094 * 185.00041 * 7 5 2 9 9 O 1.21275 * 119.99885 * 359.97438 * 8 7 5 10 10 N 1.34770 * 119.99682 * 180.02562 * 8 7 5 11 11 C 1.46508 * 119.99973 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46869 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.46691 * 179.97438 * 12 11 10 14 14 N 1.46501 * 109.47168 * 179.97438 * 13 12 11 15 15 C 1.36932 * 119.99845 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00437 * 0.02562 * 15 14 13 17 17 C 1.38811 * 119.99901 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00372 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99955 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 269.99982 * 19 17 15 21 21 H 1.48503 * 109.47399 * 29.99472 * 19 17 15 22 22 H 1.48498 * 109.47295 * 150.00079 * 19 17 15 23 23 H 1.09001 * 109.47117 * 274.32778 * 1 2 3 24 24 H 1.09003 * 109.47379 * 34.32792 * 1 2 3 25 25 H 1.09004 * 109.47252 * 154.33000 * 1 2 3 26 26 H 1.09003 * 117.49229 * 145.02805 * 4 2 1 27 27 H 1.08994 * 117.50364 * 0.02562 * 4 2 1 28 28 H 1.08996 * 109.46821 * 65.00347 * 7 5 2 29 29 H 1.08999 * 109.46922 * 305.00366 * 7 5 2 30 30 H 0.96999 * 120.00308 * 359.97438 * 10 8 7 31 31 H 1.08996 * 109.46708 * 59.99551 * 11 10 8 32 32 H 1.09002 * 109.46259 * 299.99251 * 11 10 8 33 33 H 1.08996 * 109.47396 * 59.99963 * 12 11 10 34 34 H 1.08994 * 109.47171 * 299.99013 * 12 11 10 35 35 H 1.09001 * 109.47340 * 59.99584 * 13 12 11 36 36 H 1.09000 * 109.46913 * 299.99874 * 13 12 11 37 37 H 0.97000 * 119.99725 * 0.02562 * 14 13 12 38 38 H 0.96993 * 120.00251 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2368 -1.1210 -0.7647 5 6 2.2364 -1.1207 0.7653 6 1 3.1711 -0.8746 1.2691 7 6 1.3588 -2.1561 1.4715 8 6 2.2301 -3.0966 2.2638 9 8 3.4343 -2.9531 2.2631 10 7 1.6710 -4.0976 2.9721 11 6 2.5179 -5.0115 3.7427 12 6 1.6403 -6.0477 4.4478 13 6 2.5249 -7.0025 5.2521 14 7 1.6846 -7.9943 5.9277 15 6 2.2597 -8.9593 6.7109 16 1 3.3326 -8.9889 6.8308 17 6 1.4635 -9.8987 7.3515 18 7 2.0161 -10.8265 8.1039 19 14 -0.3923 -9.8470 7.1446 20 1 -0.9845 -8.9894 8.2025 21 1 -0.7263 -9.2883 5.8099 22 1 -0.9414 -11.2221 7.2572 23 1 -0.3633 0.0776 1.0247 24 1 -0.3634 0.8487 -0.5795 25 1 -0.3634 -0.9263 -0.4452 26 1 3.1720 -0.8750 -1.2678 27 1 1.6119 -1.8585 -1.2683 28 1 0.7951 -2.7214 0.7294 29 1 0.6672 -1.6483 2.1437 30 1 0.7079 -4.2125 2.9723 31 1 3.0810 -4.4460 4.4851 32 1 3.2100 -5.5190 3.0707 33 1 1.0776 -6.6131 3.7050 34 1 0.9480 -5.5406 5.1196 35 1 3.0880 -6.4374 5.9948 36 1 3.2171 -7.5096 4.5799 37 1 0.7210 -7.9679 5.8197 38 1 1.4598 -11.4832 8.5512 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165874930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:50 Heat of formation + Delta-G solvation = -42.905105 kcal Electronic energy + Delta-G solvation = -16336.566773 eV Core-core repulsion = 13599.485010 eV Total energy + Delta-G solvation = -2737.081763 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.87542 -38.71696 -37.57917 -35.92952 -33.90404 -32.10631 -30.55093 -28.98429 -26.87836 -24.12348 -22.71868 -22.55812 -21.64229 -20.19212 -19.64038 -18.20763 -17.16182 -16.94371 -16.58858 -16.21721 -15.80942 -15.53336 -14.85719 -14.71837 -14.50764 -14.19323 -13.79515 -13.75586 -13.43001 -12.91065 -12.83293 -12.55099 -12.54454 -12.39087 -12.09190 -12.08506 -12.01079 -11.81247 -10.98781 -10.97753 -10.80058 -10.61493 -10.08977 -9.33084 -8.03955 -5.39330 1.38194 1.43851 1.51238 1.67108 2.17722 2.48857 2.88361 3.27057 3.55322 3.73054 3.76792 3.97626 4.06144 4.07249 4.23830 4.27074 4.47089 4.55203 4.65525 4.69331 4.71802 4.77927 4.89403 4.95620 5.01799 5.04653 5.24137 5.25751 5.27838 5.33082 5.45874 5.49743 5.73571 6.19576 6.59395 7.06336 7.29326 7.80576 8.01980 9.17599 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.054237 B = 0.003200 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.129114 B = 8747.654586 C = 9148.381726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 H 0.104 0.896 4 C -0.179 4.179 5 C -0.155 4.155 6 H 0.088 0.912 7 C -0.098 4.098 8 C 0.507 3.493 9 O -0.590 6.590 10 N -0.718 5.718 11 C 0.130 3.870 12 C -0.121 4.121 13 C 0.153 3.847 14 N -0.758 5.758 15 C -0.243 4.243 16 H 0.052 0.948 17 C -0.068 4.068 18 N -0.986 5.986 19 Si 0.964 3.036 20 H -0.275 1.275 21 H -0.245 1.245 22 H -0.296 1.296 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.418 0.582 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.024 0.976 36 H 0.023 0.977 37 H 0.369 0.631 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 22.699 -18.335 30.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 H 0.122 0.878 4 C -0.216 4.216 5 C -0.174 4.174 6 H 0.107 0.893 7 C -0.138 4.138 8 C 0.296 3.704 9 O -0.471 6.471 10 N -0.371 5.371 11 C 0.005 3.995 12 C -0.159 4.159 13 C 0.026 3.974 14 N -0.404 5.404 15 C -0.374 4.374 16 H 0.070 0.930 17 C -0.260 4.260 18 N -0.636 5.636 19 Si 0.790 3.210 20 H -0.201 1.201 21 H -0.169 1.169 22 H -0.223 1.223 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.123 0.877 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.255 0.745 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.203 0.797 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.624 22.691 -18.243 30.097 hybrid contribution -0.648 -0.665 0.440 1.028 sum -8.272 22.026 -17.803 29.505 Atomic orbital electron populations 1.21411 0.91326 1.02770 1.02602 1.22505 0.96449 0.94045 1.03075 0.87765 1.23257 1.02757 1.02181 0.93430 1.22066 1.00846 1.00059 0.94430 0.89346 1.21209 0.97364 0.95221 0.99955 1.21307 0.88827 0.81342 0.78970 1.90683 1.17593 1.73678 1.65098 1.45939 1.11629 1.30415 1.49131 1.21061 0.93315 0.90618 0.94512 1.21754 0.98440 0.96184 0.99542 1.20664 0.93345 0.89485 0.93862 1.42648 1.05336 1.34221 1.58232 1.19046 0.92664 1.05445 1.20276 0.93016 1.25653 1.03630 0.97267 0.99411 1.69906 1.36597 1.19985 1.37085 0.85277 0.79520 0.76863 0.79299 1.20143 1.16916 1.22274 0.91364 0.91467 0.91704 0.89348 0.87724 0.86448 0.86114 0.74528 0.92356 0.92434 0.89931 0.89785 0.95796 0.95904 0.79703 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.19 71.98 0.66 -0.34 16 2 C -0.14 -1.74 6.41 -10.80 -0.07 -1.80 16 3 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.18 -2.54 9.82 30.59 0.30 -2.24 16 5 C -0.16 -2.59 5.41 -10.80 -0.06 -2.65 16 6 H 0.09 2.01 7.31 -2.39 -0.02 1.99 16 7 C -0.10 -1.31 5.06 29.85 0.15 -1.16 16 8 C 0.51 11.18 7.83 87.66 0.69 11.86 16 9 O -0.59 -19.02 15.56 -3.01 -0.05 -19.07 16 10 N -0.72 -13.51 5.56 -463.05 -2.57 -16.09 16 11 C 0.13 3.16 5.67 86.38 0.49 3.65 16 12 C -0.12 -3.08 5.44 30.60 0.17 -2.91 16 13 C 0.15 5.69 6.26 86.38 0.54 6.23 16 14 N -0.76 -35.15 5.41 -343.45 -1.86 -37.00 16 15 C -0.24 -14.13 10.47 84.03 0.88 -13.25 16 16 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 17 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 18 N -0.99 -63.78 13.97 21.65 0.30 -63.48 16 19 Si 0.96 44.59 27.74 68.60 1.90 46.50 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.24 -9.90 6.52 99.48 0.65 -9.26 16 22 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 23 H 0.07 0.47 7.83 -2.39 -0.02 0.45 16 24 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.06 0.44 7.90 -2.38 -0.02 0.42 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.10 1.23 7.94 -2.39 -0.02 1.21 16 28 H 0.12 1.04 7.87 -2.39 -0.02 1.02 16 29 H 0.12 1.06 7.77 -2.39 -0.02 1.04 16 30 H 0.42 4.90 8.47 -92.71 -0.79 4.12 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.37 15.73 5.53 -92.71 -0.51 15.21 16 38 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -75.56 316.31 1.63 -73.93 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -0.32 Total: 21.41 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 4.22 Total: -6.20 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -4.13 Total: -116.57 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.05 Total: -19.07 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.90 Total: 46.50 kcal Total: -75.56 1.63 -73.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165874930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.021 kcal (2) G-P(sol) polarization free energy of solvation -75.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds