Wall clock time and date at job start Sun Mar 29 2020 23:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21282 * 120.00415 * 2 1 4 4 N 1.34775 * 120.00116 * 179.97438 * 2 1 3 5 5 C 1.48144 * 127.83969 * 0.02562 * 4 2 1 6 6 C 1.54385 * 104.61907 * 140.41308 * 5 4 2 7 7 H 1.09004 * 110.34191 * 142.74386 * 6 5 4 8 8 C 1.53000 * 110.43155 * 264.94967 * 6 5 4 9 9 C 1.54277 * 104.96161 * 23.87011 * 6 5 4 10 10 C 1.53001 * 110.43227 * 241.08441 * 9 6 5 11 11 C 1.53001 * 110.34653 * 118.87017 * 9 6 5 12 12 N 1.46498 * 109.47410 * 183.01191 * 11 9 6 13 13 C 1.36933 * 120.00279 * 180.02562 * 12 11 9 14 14 H 1.08005 * 119.99857 * 359.97438 * 13 12 11 15 15 C 1.38810 * 120.00277 * 179.97438 * 13 12 11 16 16 N 1.31616 * 120.00240 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99965 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.47230 * 90.00323 * 17 15 13 19 19 H 1.48506 * 109.47288 * 210.00364 * 17 15 13 20 20 H 1.48502 * 109.47544 * 330.00554 * 17 15 13 21 21 C 1.48151 * 127.83798 * 180.02562 * 4 2 1 22 22 H 1.09000 * 109.47601 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47427 * 300.00166 * 1 2 3 24 24 H 1.08999 * 109.47376 * 60.00025 * 1 2 3 25 25 H 1.09004 * 110.40486 * 21.62720 * 5 4 2 26 26 H 1.09003 * 110.50809 * 259.25429 * 5 4 2 27 27 H 1.09002 * 109.46989 * 175.59264 * 8 6 5 28 28 H 1.09002 * 109.47468 * 295.58847 * 8 6 5 29 29 H 1.08999 * 109.47260 * 55.59162 * 8 6 5 30 30 H 1.08998 * 109.47241 * 177.04472 * 10 9 6 31 31 H 1.09000 * 109.47086 * 297.04305 * 10 9 6 32 32 H 1.09005 * 109.47126 * 57.04195 * 10 9 6 33 33 H 1.09006 * 109.46640 * 303.00792 * 11 9 6 34 34 H 1.09001 * 109.47083 * 63.00447 * 11 9 6 35 35 H 0.97003 * 119.99626 * 359.97438 * 12 11 9 36 36 H 0.97002 * 120.00721 * 179.97438 * 16 15 13 37 37 H 1.08992 * 110.40889 * 100.80110 * 21 4 2 38 38 H 1.09000 * 110.40506 * 338.36430 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.6221 -2.5392 0.0006 6 6 2.5417 -3.3345 -0.9508 7 1 2.6889 -4.3476 -0.5765 8 6 1.9486 -3.3705 -2.3607 9 6 3.8778 -2.5632 -0.9505 10 6 4.2072 -2.0649 -2.3591 11 6 5.0058 -3.4532 -0.4248 12 7 6.2494 -2.6813 -0.3649 13 6 7.4022 -3.2733 0.0776 14 1 7.3944 -4.3093 0.3828 15 6 8.5807 -2.5421 0.1339 16 7 9.6887 -3.1112 0.5587 17 14 8.5943 -0.7505 -0.3947 18 1 8.2941 0.1132 0.7755 19 1 9.9334 -0.4040 -0.9351 20 1 7.5662 -0.5363 -1.4447 21 6 3.6485 -1.3692 0.0011 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 0.5993 -2.5330 -0.3763 26 1 1.6539 -2.9644 1.0038 27 1 2.6458 -3.8669 -3.0356 28 1 1.0062 -3.9181 -2.3447 29 1 1.7711 -2.3521 -2.7064 30 1 5.1256 -1.4784 -2.3315 31 1 4.3408 -2.9180 -3.0242 32 1 3.3900 -1.4433 -2.7250 33 1 4.7515 -3.8106 0.5731 34 1 5.1382 -4.3044 -1.0927 35 1 6.2565 -1.7510 -0.6394 36 1 10.5124 -2.6004 0.5977 37 1 3.9985 -1.6104 1.0047 38 1 4.1546 -0.4803 -0.3755 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180376501.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:21 Heat of formation + Delta-G solvation = -22.618880 kcal Electronic energy + Delta-G solvation = -18184.834610 eV Core-core repulsion = 15448.632523 eV Total energy + Delta-G solvation = -2736.202086 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.37446 -38.25682 -34.98497 -33.21029 -31.64506 -30.51459 -29.64202 -27.31716 -25.63988 -25.40991 -22.96562 -21.10956 -19.37733 -18.71365 -17.61968 -16.85996 -16.05803 -15.28929 -14.70101 -14.60060 -14.15809 -14.03970 -13.65886 -13.25823 -12.92190 -12.78400 -12.58250 -12.43250 -12.22321 -11.94334 -11.68421 -11.46705 -11.38688 -11.28247 -10.84392 -10.45080 -10.40664 -10.23606 -9.98848 -9.81603 -9.55447 -8.89275 -8.65973 -7.22199 -5.75992 -3.11347 2.64144 3.00394 3.40109 3.43907 3.48485 4.38985 4.50018 4.61003 4.75170 4.79180 5.03780 5.19775 5.24576 5.31023 5.36182 5.38803 5.47974 5.56311 5.63935 5.68383 5.75178 5.80439 5.93117 5.95670 6.03863 6.11590 6.13517 6.29970 6.47992 6.53169 6.64441 6.71792 7.60696 7.99661 8.17509 8.43030 9.22026 9.94687 10.14125 11.42400 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028049 B = 0.007149 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.021813 B = 3915.600478 C = 4457.662744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.527 3.473 3 O -0.551 6.551 4 N -0.621 5.621 5 C 0.103 3.897 6 C -0.097 4.097 7 H 0.091 0.909 8 C -0.142 4.142 9 C -0.080 4.080 10 C -0.133 4.133 11 C 0.173 3.827 12 N -0.754 5.754 13 C -0.244 4.244 14 H 0.090 0.910 15 C 0.006 3.994 16 N -0.934 5.934 17 Si 0.880 3.120 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.277 1.277 21 C 0.113 3.887 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.029 0.971 34 H 0.031 0.969 35 H 0.361 0.639 36 H 0.259 0.741 37 H 0.080 0.920 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.087 0.214 -3.823 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.317 3.683 3 O -0.429 6.429 4 N -0.355 5.355 5 C -0.020 4.020 6 C -0.117 4.117 7 H 0.109 0.891 8 C -0.199 4.199 9 C -0.081 4.081 10 C -0.190 4.190 11 C 0.045 3.955 12 N -0.401 5.401 13 C -0.374 4.374 14 H 0.108 0.892 15 C -0.189 4.189 16 N -0.582 5.582 17 Si 0.710 3.290 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.009 4.009 22 H 0.095 0.905 23 H 0.111 0.889 24 H 0.110 0.890 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.195 0.805 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.669 0.717 -3.732 21.016 hybrid contribution 0.220 1.190 -0.300 1.246 sum -20.450 1.906 -4.032 20.930 Atomic orbital electron populations 1.21864 0.91808 1.04156 1.05010 1.20399 0.90107 0.82007 0.75813 1.90736 1.70700 1.30648 1.50849 1.49117 1.08373 1.05487 1.72504 1.22541 0.97759 0.81725 0.99948 1.22126 0.94131 0.99511 0.95901 0.89109 1.21914 1.00187 1.01793 0.96053 1.21770 0.95013 0.95218 0.96121 1.21885 1.01106 1.01021 0.95026 1.20696 0.84417 0.92767 0.97588 1.42743 1.05953 1.10977 1.80378 1.19039 0.85464 0.97250 1.35615 0.89198 1.24640 0.95503 0.97553 1.01238 1.69694 0.99539 1.36033 1.52938 0.86626 0.76861 0.86802 0.78703 1.20958 1.21667 1.20319 1.22501 0.79689 0.98468 1.00206 0.90520 0.88899 0.88967 0.90247 0.90771 0.91790 0.93023 0.92501 0.92288 0.92051 0.93090 0.95301 0.95105 0.80532 0.93062 0.90201 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.24 36.00 0.37 -1.10 16 2 C 0.53 7.42 8.02 -10.99 -0.09 7.33 16 3 O -0.55 -10.44 17.37 5.56 0.10 -10.34 16 4 N -0.62 -8.26 3.32 -169.31 -0.56 -8.82 16 5 C 0.10 1.01 6.35 -2.41 -0.02 0.99 16 6 C -0.10 -1.05 3.30 -89.23 -0.29 -1.34 16 7 H 0.09 0.92 7.71 -51.93 -0.40 0.52 16 8 C -0.14 -1.34 7.93 37.16 0.29 -1.04 16 9 C -0.08 -1.17 0.73 -153.11 -0.11 -1.29 16 10 C -0.13 -1.99 7.08 37.16 0.26 -1.73 16 11 C 0.17 3.17 4.85 -4.04 -0.02 3.15 16 12 N -0.75 -17.65 4.92 -59.91 -0.29 -17.95 16 13 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 14 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 15 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 16 N -0.93 -29.53 13.97 55.49 0.78 -28.76 16 17 Si 0.88 22.64 27.73 -169.99 -4.71 17.93 16 18 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 20 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 21 C 0.11 1.82 5.55 -2.40 -0.01 1.80 16 22 H 0.08 0.49 5.99 -51.93 -0.31 0.17 16 23 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.57 6.16 -51.93 -0.32 0.25 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.63 6.89 -51.93 -0.36 0.27 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.57 6.73 -51.93 -0.35 0.22 16 30 H 0.06 1.03 6.99 -51.93 -0.36 0.66 16 31 H 0.06 0.86 6.99 -51.93 -0.36 0.49 16 32 H 0.05 0.70 6.63 -51.93 -0.34 0.36 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.36 8.45 4.13 -40.82 -0.17 8.28 16 36 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 37 H 0.08 1.36 7.86 -51.93 -0.41 0.95 16 38 H 0.08 1.47 7.60 -51.93 -0.39 1.07 16 LS Contribution 296.97 15.07 4.48 4.48 Total: -1.00 -33.95 296.97 -6.00 -39.96 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.91 Total: 3.66 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 0.13 Total: -0.15 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.08 Total: -55.53 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.10 Total: -10.34 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.71 Total: 17.93 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.95 -6.00 -39.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180376501.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.336 kcal (2) G-P(sol) polarization free energy of solvation -33.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds