Wall clock time and date at job start Sun Mar 29 2020 23:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21282 * 120.00415 * 2 1 4 4 N 1.34775 * 120.00116 * 179.97438 * 2 1 3 5 5 C 1.48144 * 127.83969 * 0.02562 * 4 2 1 6 6 C 1.54385 * 104.61907 * 140.41308 * 5 4 2 7 7 H 1.09004 * 110.34191 * 142.74386 * 6 5 4 8 8 C 1.53000 * 110.43155 * 264.94967 * 6 5 4 9 9 C 1.54277 * 104.96161 * 23.87011 * 6 5 4 10 10 C 1.53001 * 110.43227 * 241.08441 * 9 6 5 11 11 C 1.53001 * 110.34653 * 118.87017 * 9 6 5 12 12 N 1.46498 * 109.47410 * 183.01191 * 11 9 6 13 13 C 1.36933 * 120.00279 * 180.02562 * 12 11 9 14 14 H 1.08005 * 119.99857 * 359.97438 * 13 12 11 15 15 C 1.38810 * 120.00277 * 179.97438 * 13 12 11 16 16 N 1.31616 * 120.00240 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99965 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.47230 * 90.00323 * 17 15 13 19 19 H 1.48506 * 109.47288 * 210.00364 * 17 15 13 20 20 H 1.48502 * 109.47544 * 330.00554 * 17 15 13 21 21 C 1.48151 * 127.83798 * 180.02562 * 4 2 1 22 22 H 1.09000 * 109.47601 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47427 * 300.00166 * 1 2 3 24 24 H 1.08999 * 109.47376 * 60.00025 * 1 2 3 25 25 H 1.09004 * 110.40486 * 21.62720 * 5 4 2 26 26 H 1.09003 * 110.50809 * 259.25429 * 5 4 2 27 27 H 1.09002 * 109.46989 * 175.59264 * 8 6 5 28 28 H 1.09002 * 109.47468 * 295.58847 * 8 6 5 29 29 H 1.08999 * 109.47260 * 55.59162 * 8 6 5 30 30 H 1.08998 * 109.47241 * 177.04472 * 10 9 6 31 31 H 1.09000 * 109.47086 * 297.04305 * 10 9 6 32 32 H 1.09005 * 109.47126 * 57.04195 * 10 9 6 33 33 H 1.09006 * 109.46640 * 303.00792 * 11 9 6 34 34 H 1.09001 * 109.47083 * 63.00447 * 11 9 6 35 35 H 0.97003 * 119.99626 * 359.97438 * 12 11 9 36 36 H 0.97002 * 120.00721 * 179.97438 * 16 15 13 37 37 H 1.08992 * 110.40889 * 100.80110 * 21 4 2 38 38 H 1.09000 * 110.40506 * 338.36430 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.6221 -2.5392 0.0006 6 6 2.5417 -3.3345 -0.9508 7 1 2.6889 -4.3476 -0.5765 8 6 1.9486 -3.3705 -2.3607 9 6 3.8778 -2.5632 -0.9505 10 6 4.2072 -2.0649 -2.3591 11 6 5.0058 -3.4532 -0.4248 12 7 6.2494 -2.6813 -0.3649 13 6 7.4022 -3.2733 0.0776 14 1 7.3944 -4.3093 0.3828 15 6 8.5807 -2.5421 0.1339 16 7 9.6887 -3.1112 0.5587 17 14 8.5943 -0.7505 -0.3947 18 1 8.2941 0.1132 0.7755 19 1 9.9334 -0.4040 -0.9351 20 1 7.5662 -0.5363 -1.4447 21 6 3.6485 -1.3692 0.0011 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 0.5993 -2.5330 -0.3763 26 1 1.6539 -2.9644 1.0038 27 1 2.6458 -3.8669 -3.0356 28 1 1.0062 -3.9181 -2.3447 29 1 1.7711 -2.3521 -2.7064 30 1 5.1256 -1.4784 -2.3315 31 1 4.3408 -2.9180 -3.0242 32 1 3.3900 -1.4433 -2.7250 33 1 4.7515 -3.8106 0.5731 34 1 5.1382 -4.3044 -1.0927 35 1 6.2565 -1.7510 -0.6394 36 1 10.5124 -2.6004 0.5977 37 1 3.9985 -1.6104 1.0047 38 1 4.1546 -0.4803 -0.3755 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180376501.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:20 Heat of formation + Delta-G solvation = -46.754806 kcal Electronic energy + Delta-G solvation = -18185.881222 eV Core-core repulsion = 15448.632523 eV Total energy + Delta-G solvation = -2737.248699 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.46467 -39.44050 -36.65479 -34.62849 -33.31805 -31.77052 -30.72116 -28.51382 -26.87446 -26.61237 -24.66034 -22.44415 -20.47980 -20.20341 -19.22537 -17.97641 -17.22097 -16.57828 -16.35193 -15.92077 -15.50024 -15.25288 -15.12600 -14.65289 -14.30337 -13.92850 -13.61490 -13.52574 -13.32951 -13.31867 -12.93230 -12.90570 -12.59790 -12.53679 -12.36703 -12.11986 -11.88609 -11.51402 -11.45804 -11.23748 -11.02402 -10.92918 -9.76039 -9.29854 -8.05653 -5.36880 1.32303 1.34529 1.40107 1.59568 2.00085 2.43256 3.26483 3.31892 3.54711 3.74273 3.80077 3.98143 4.20564 4.25036 4.30351 4.44874 4.54721 4.61219 4.63108 4.73900 4.75533 4.81468 4.91402 4.98806 5.01097 5.05111 5.09257 5.14385 5.24641 5.35642 5.42134 5.59410 5.74848 6.19266 6.61022 7.05774 7.12336 7.83464 8.00085 9.16072 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028049 B = 0.007149 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.021813 B = 3915.600478 C = 4457.662744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.516 3.484 3 O -0.612 6.612 4 N -0.618 5.618 5 C 0.103 3.897 6 C -0.091 4.091 7 H 0.104 0.896 8 C -0.139 4.139 9 C -0.072 4.072 10 C -0.128 4.128 11 C 0.169 3.831 12 N -0.758 5.758 13 C -0.227 4.227 14 H 0.064 0.936 15 C -0.057 4.057 16 N -0.981 5.981 17 Si 0.940 3.060 18 H -0.284 1.284 19 H -0.292 1.292 20 H -0.259 1.259 21 C 0.112 3.888 22 H 0.108 0.892 23 H 0.103 0.897 24 H 0.104 0.896 25 H 0.119 0.881 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.035 0.965 35 H 0.362 0.638 36 H 0.257 0.743 37 H 0.064 0.936 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.637 -0.170 -4.658 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.308 3.692 3 O -0.495 6.495 4 N -0.351 5.351 5 C -0.019 4.019 6 C -0.111 4.111 7 H 0.122 0.878 8 C -0.196 4.196 9 C -0.073 4.073 10 C -0.186 4.186 11 C 0.043 3.957 12 N -0.404 5.404 13 C -0.358 4.358 14 H 0.082 0.918 15 C -0.249 4.249 16 N -0.632 5.632 17 Si 0.768 3.232 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.184 1.184 21 C -0.012 4.012 22 H 0.127 0.873 23 H 0.121 0.879 24 H 0.123 0.877 25 H 0.137 0.863 26 H 0.105 0.895 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.195 0.805 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -24.297 0.291 -4.583 24.728 hybrid contribution 1.277 1.205 -0.007 1.756 sum -23.020 1.496 -4.590 23.521 Atomic orbital electron populations 1.21894 0.86959 1.06633 1.06087 1.21516 0.92282 0.81071 0.74289 1.90707 1.72323 1.32853 1.53598 1.49232 1.07067 1.07108 1.71721 1.22820 0.99241 0.79119 1.00676 1.22159 0.91675 0.99626 0.97601 0.87784 1.21890 1.01356 1.01860 0.94467 1.21655 0.95927 0.94562 0.95203 1.21847 1.00054 1.01171 0.95482 1.20907 0.83627 0.93144 0.98003 1.42813 1.06343 1.11326 1.79911 1.19075 0.86982 0.96158 1.33563 0.91762 1.25330 0.95355 1.01670 1.02540 1.69846 1.00237 1.37733 1.55383 0.85637 0.77042 0.81827 0.78646 1.21054 1.21831 1.18442 1.22278 0.81880 0.97596 0.99402 0.87301 0.87851 0.87722 0.86294 0.89530 0.92373 0.90034 0.93087 0.95424 0.90963 0.91789 0.94959 0.94697 0.80491 0.93361 0.91822 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 10.24 71.23 0.73 -1.37 16 2 C 0.52 13.62 8.02 87.65 0.70 14.32 16 3 O -0.61 -23.32 17.37 -3.03 -0.05 -23.37 16 4 N -0.62 -15.16 3.32 -807.96 -2.68 -17.84 16 5 C 0.10 1.56 6.35 86.53 0.55 2.11 16 6 C -0.09 -1.63 3.30 -9.89 -0.03 -1.67 16 7 H 0.10 1.67 7.71 -2.38 -0.02 1.65 16 8 C -0.14 -2.00 7.93 71.98 0.57 -1.43 16 9 C -0.07 -2.01 0.73 -51.27 -0.04 -2.05 16 10 C -0.13 -3.68 7.08 71.98 0.51 -3.17 16 11 C 0.17 6.08 4.85 86.38 0.42 6.50 16 12 N -0.76 -35.65 4.92 -343.45 -1.69 -37.34 16 13 C -0.23 -13.01 10.47 84.03 0.88 -12.13 16 14 H 0.06 3.97 8.06 -2.91 -0.02 3.94 16 15 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16 16 N -0.98 -63.72 13.97 21.65 0.30 -63.42 16 17 Si 0.94 47.75 27.73 68.60 1.90 49.66 16 18 H -0.28 -14.37 7.11 99.48 0.71 -13.66 16 19 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 20 H -0.26 -12.25 6.52 99.48 0.65 -11.60 16 21 C 0.11 3.55 5.55 86.54 0.48 4.03 16 22 H 0.11 0.73 5.99 -2.39 -0.01 0.72 16 23 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.12 0.93 6.16 -2.39 -0.01 0.92 16 26 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 0.93 6.89 -2.39 -0.02 0.91 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.81 6.73 -2.39 -0.02 0.80 16 30 H 0.03 0.94 6.99 -2.39 -0.02 0.93 16 31 H 0.07 1.89 6.99 -2.39 -0.02 1.87 16 32 H 0.06 1.66 6.63 -2.38 -0.02 1.64 16 33 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.36 17.00 4.13 -92.71 -0.38 16.62 16 36 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 37 H 0.06 2.19 7.86 -2.39 -0.02 2.17 16 38 H 0.05 1.80 7.60 -2.39 -0.02 1.78 16 Total: -1.00 -77.33 296.97 3.62 -73.70 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.60 Total: 16.44 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 5.24 Total: 2.16 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -4.07 Total: -118.59 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.90 Total: 49.66 kcal Total: -77.33 3.62 -73.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180376501.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.948 kcal (2) G-P(sol) polarization free energy of solvation -77.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds