Wall clock time and date at job start Sun Mar 29 2020 23:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21279 * 120.00072 * 2 1 4 4 N 1.34777 * 120.00040 * 180.02562 * 2 1 3 5 5 C 1.46919 * 120.63206 * 359.97438 * 4 2 1 6 6 C 1.53195 * 108.77920 * 233.63256 * 5 4 2 7 7 C 1.53042 * 109.31134 * 305.36787 * 6 5 4 8 8 H 1.09007 * 109.45792 * 301.35759 * 7 6 5 9 9 C 1.52997 * 109.45924 * 181.38410 * 7 6 5 10 10 N 1.46505 * 109.47212 * 64.99631 * 9 7 6 11 11 C 1.36936 * 119.99992 * 179.97438 * 10 9 7 12 12 H 1.08006 * 119.99834 * 0.02562 * 11 10 9 13 13 C 1.38801 * 120.00093 * 180.02562 * 11 10 9 14 14 N 1.31619 * 120.00176 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00265 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46968 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47299 * 119.99957 * 15 13 11 18 18 H 1.48495 * 109.47075 * 240.00117 * 15 13 11 19 19 C 1.53042 * 109.53839 * 61.35974 * 7 6 5 20 20 H 1.08997 * 109.49531 * 58.58797 * 19 7 6 21 21 C 1.53003 * 109.49320 * 178.68385 * 19 7 6 22 22 C 1.46928 * 120.62878 * 180.02562 * 4 2 1 23 23 H 1.09007 * 109.46865 * 239.99399 * 1 2 3 24 24 H 1.09004 * 109.47501 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47137 * 119.99630 * 1 2 3 26 26 H 1.09004 * 109.58866 * 113.84615 * 5 4 2 27 27 H 1.09002 * 109.58901 * 353.42262 * 5 4 2 28 28 H 1.08991 * 109.49903 * 185.41375 * 6 5 4 29 29 H 1.09001 * 109.52082 * 65.33356 * 6 5 4 30 30 H 1.09002 * 109.47153 * 304.99623 * 9 7 6 31 31 H 1.09001 * 109.46832 * 184.99814 * 9 7 6 32 32 H 0.96996 * 119.99606 * 0.02562 * 10 9 7 33 33 H 0.97001 * 120.00803 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.47034 * 60.00418 * 21 19 7 35 35 H 1.09004 * 109.46753 * 179.97438 * 21 19 7 36 36 H 1.09001 * 109.47142 * 300.00028 * 21 19 7 37 37 H 1.08994 * 109.58897 * 246.15548 * 22 4 2 38 38 H 1.08996 * 109.58599 * 6.44258 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4604 -2.4476 -0.0005 6 6 1.9685 -3.2994 1.1670 7 6 3.4899 -3.4343 1.0705 8 1 3.7542 -3.8917 0.1170 9 6 3.9973 -4.3131 2.2156 10 7 3.4764 -5.6730 2.0551 11 6 3.7997 -6.6420 2.9671 12 1 4.4382 -6.4036 3.8050 13 6 3.3067 -7.9306 2.8149 14 7 2.5289 -8.2212 1.7936 15 14 3.7470 -9.2523 4.0594 16 1 4.6279 -8.6734 5.1054 17 1 2.5068 -9.7719 4.6894 18 1 4.4559 -10.3620 3.3730 19 6 4.1336 -2.0492 1.1670 20 1 3.8496 -1.5809 2.1093 21 6 5.6560 -2.1882 1.1034 22 6 3.6501 -1.1833 0.0000 23 1 -0.3633 -0.5140 0.8900 24 1 -0.3634 1.0277 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 1.6426 -2.9695 -0.9400 27 1 0.3921 -2.2658 0.1176 28 1 1.5120 -4.2881 1.1217 29 1 1.7048 -2.8198 2.1096 30 1 3.6566 -3.9034 3.1665 31 1 5.0869 -4.3371 2.1998 32 1 2.9033 -5.8871 1.3025 33 1 2.1847 -9.1218 1.6869 34 1 5.9391 -2.6553 0.1602 35 1 6.1141 -1.2014 1.1717 36 1 5.9993 -2.8067 1.9327 37 1 4.0113 -1.6018 -0.9393 38 1 4.0266 -0.1670 0.1161 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183698162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:22 Heat of formation + Delta-G solvation = -40.539341 kcal Electronic energy + Delta-G solvation = -17771.734124 eV Core-core repulsion = 15034.754948 eV Total energy + Delta-G solvation = -2736.979176 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.21109 -37.96062 -34.97866 -33.64317 -32.00463 -30.37662 -29.97193 -26.89125 -26.09806 -23.70017 -22.49760 -21.34957 -19.95593 -18.97250 -17.25241 -16.80830 -15.95532 -15.47933 -14.84370 -14.44957 -13.92918 -13.83010 -13.53266 -13.48800 -13.03448 -12.74114 -12.49424 -12.47022 -12.18162 -11.87960 -11.74892 -11.55927 -11.00195 -10.89077 -10.82487 -10.38201 -10.28633 -10.17559 -9.96093 -9.74678 -9.63981 -8.87466 -8.57763 -6.91291 -5.78171 -3.05932 2.60487 3.03076 3.42164 3.48270 3.50148 4.54296 4.57921 4.81930 4.94858 5.00950 5.11853 5.14066 5.25839 5.31562 5.44669 5.53365 5.57315 5.69236 5.72578 5.81491 5.87986 5.93760 5.99685 6.08545 6.23995 6.29460 6.33906 6.47191 6.52014 6.64255 6.83622 6.93508 7.41861 7.69852 8.14894 8.41419 9.52669 10.11047 10.45708 11.44993 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038696 B = 0.005207 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.418350 B = 5376.264218 C = 5873.276616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.511 3.489 3 O -0.558 6.558 4 N -0.610 5.610 5 C 0.105 3.895 6 C -0.127 4.127 7 C -0.089 4.089 8 H 0.072 0.928 9 C 0.156 3.844 10 N -0.732 5.732 11 C -0.237 4.237 12 H 0.070 0.930 13 C -0.014 4.014 14 N -0.935 5.935 15 Si 0.905 3.095 16 H -0.281 1.281 17 H -0.292 1.292 18 H -0.292 1.292 19 C -0.097 4.097 20 H 0.072 0.928 21 C -0.147 4.147 22 C 0.116 3.884 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.016 0.984 31 H 0.024 0.976 32 H 0.383 0.617 33 H 0.254 0.746 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.255 13.374 -4.625 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.300 3.700 3 O -0.436 6.436 4 N -0.343 5.343 5 C -0.018 4.018 6 C -0.165 4.165 7 C -0.108 4.108 8 H 0.090 0.910 9 C 0.029 3.971 10 N -0.376 5.376 11 C -0.368 4.368 12 H 0.088 0.912 13 C -0.210 4.210 14 N -0.584 5.584 15 Si 0.737 3.263 16 H -0.206 1.206 17 H -0.219 1.219 18 H -0.219 1.219 19 C -0.117 4.117 20 H 0.090 0.910 21 C -0.205 4.205 22 C -0.006 4.006 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.217 0.783 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.871 13.847 -4.481 14.674 hybrid contribution -0.034 -1.083 0.451 1.174 sum -1.905 12.764 -4.030 13.520 Atomic orbital electron populations 1.21938 0.92053 1.05096 1.04253 1.20793 0.90628 0.83070 0.75510 1.90681 1.70874 1.31204 1.50891 1.48215 1.07187 1.06209 1.72673 1.21901 0.96406 0.83593 0.99880 1.21940 0.96432 1.00688 0.97408 1.21337 0.94406 0.94374 1.00658 0.90992 1.20761 0.96230 0.85793 0.94361 1.42385 1.59630 1.04613 1.30993 1.19281 1.24360 0.89517 1.03631 0.91234 1.24711 1.00409 0.97494 0.98399 1.69657 1.38199 1.19844 1.30689 0.86136 0.77510 0.82119 0.80566 1.20591 1.21900 1.21890 1.21446 0.95899 0.95858 0.98474 0.90979 1.21833 0.94413 1.01422 1.02793 1.21674 0.79082 1.01446 0.98411 0.89267 0.89280 0.89443 0.91109 0.89785 0.89248 0.91790 0.96579 0.95792 0.78333 0.93605 0.92519 0.93019 0.91313 0.91641 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 8.67 36.00 0.31 -1.24 16 2 C 0.51 6.76 7.81 -10.99 -0.09 6.67 16 3 O -0.56 -9.49 16.50 5.56 0.09 -9.40 16 4 N -0.61 -7.69 2.97 -172.80 -0.51 -8.20 16 5 C 0.10 1.19 6.34 -3.71 -0.02 1.17 16 6 C -0.13 -1.80 5.25 -26.61 -0.14 -1.94 16 7 C -0.09 -1.37 1.73 -90.58 -0.16 -1.52 16 8 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 9 C 0.16 3.04 5.41 -4.04 -0.02 3.02 16 10 N -0.73 -17.98 5.32 -59.91 -0.32 -18.30 16 11 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 12 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 13 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 14 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 15 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 C -0.10 -1.29 2.41 -90.52 -0.22 -1.51 16 20 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 21 C -0.15 -1.81 8.82 37.16 0.33 -1.48 16 22 C 0.12 1.49 5.71 -3.73 -0.02 1.47 16 23 H 0.09 0.69 7.69 -51.93 -0.40 0.29 16 24 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 25 H 0.09 0.62 7.94 -51.93 -0.41 0.21 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.76 5.93 -51.93 -0.31 0.45 16 28 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.02 0.48 6.14 -51.93 -0.32 0.16 16 32 H 0.38 9.76 6.85 -40.82 -0.28 9.48 16 33 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.91 6.29 -51.93 -0.33 0.58 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.21 7.00 -51.93 -0.36 0.85 16 LS Contribution 300.76 15.07 4.53 4.53 Total: -1.00 -32.03 300.76 -6.91 -38.94 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.13 Total: 4.85 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -0.27 Total: -2.57 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.11 Total: -53.55 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.03 -6.91 -38.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183698162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.603 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds