Wall clock time and date at job start Sun Mar 29 2020 22:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47121 * 2 1 4 4 N 1.46500 * 109.47289 * 119.99725 * 2 1 3 5 5 C 1.34784 * 120.00066 * 155.00069 * 4 2 1 6 6 O 1.21588 * 119.99492 * 359.97438 * 5 4 2 7 7 N 1.34770 * 120.00017 * 180.02562 * 5 4 2 8 8 C 1.46506 * 119.99631 * 185.26080 * 7 5 4 9 9 C 1.50698 * 110.43455 * 297.94317 * 8 7 5 10 10 H 1.08000 * 120.00038 * 122.58100 * 9 8 7 11 11 C 1.37877 * 120.00003 * 302.57880 * 9 8 7 12 12 N 1.31513 * 120.00002 * 355.00569 * 11 9 8 13 13 Si 1.86801 * 119.99998 * 175.00451 * 11 9 8 14 14 H 1.48495 * 109.47311 * 89.99789 * 13 11 9 15 15 H 1.48499 * 109.47353 * 210.00022 * 13 11 9 16 16 H 1.48505 * 109.46791 * 329.99954 * 13 11 9 17 17 C 1.54888 * 110.48535 * 60.63046 * 8 7 5 18 18 C 1.54890 * 102.74913 * 80.73722 * 17 8 7 19 19 C 1.54262 * 104.20047 * 37.93636 * 18 17 8 20 20 C 1.53883 * 106.59841 * 336.39443 * 19 18 17 21 21 H 1.08996 * 109.47194 * 299.99753 * 1 2 3 22 22 H 1.08999 * 109.47284 * 60.00256 * 1 2 3 23 23 H 1.09001 * 109.46751 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47672 * 240.00206 * 2 1 3 25 25 H 1.09007 * 109.47085 * 299.99939 * 3 2 1 26 26 H 1.09003 * 109.47517 * 59.99937 * 3 2 1 27 27 H 1.09005 * 109.47476 * 180.02562 * 3 2 1 28 28 H 0.96999 * 120.00152 * 335.00341 * 4 2 1 29 29 H 0.96995 * 120.00124 * 5.26126 * 7 5 4 30 30 H 0.97007 * 119.99773 * 184.99985 * 12 11 9 31 31 H 1.08997 * 110.76019 * 322.41543 * 17 8 7 32 32 H 1.09000 * 110.75233 * 199.04655 * 17 8 7 33 33 H 1.09003 * 110.48356 * 279.25815 * 18 17 8 34 34 H 1.08998 * 110.48953 * 156.62501 * 18 17 8 35 35 H 1.09008 * 110.03046 * 95.67656 * 19 18 17 36 36 H 1.08996 * 110.03879 * 217.05725 * 19 18 17 37 37 H 1.09000 * 110.02880 * 119.27965 * 20 19 18 38 38 H 1.08998 * 110.02847 * 240.71116 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 3.2404 -1.2591 1.1944 6 8 3.9372 -1.1992 0.1998 7 7 3.6894 -1.8948 2.2947 8 6 5.0596 -2.4121 2.3337 9 6 5.2571 -3.4594 1.2682 10 1 6.0315 -3.3350 0.5258 11 6 4.4493 -4.5764 1.2413 12 7 3.5724 -4.7770 2.2007 13 14 4.6002 -5.8046 -0.1581 14 1 5.6005 -6.8422 0.1997 15 1 3.2832 -6.4480 -0.3962 16 1 5.0370 -5.1000 -1.3902 17 6 6.0794 -1.2593 2.1606 18 6 6.1527 -0.6513 3.5833 19 6 6.0728 -1.8732 4.5216 20 6 5.3778 -2.9928 3.7271 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 3.1300 1.4426 -0.0005 28 1 1.4622 -0.7386 1.9895 29 1 3.1056 -2.0098 3.0606 30 1 3.0552 -5.5975 2.2212 31 1 5.7131 -0.5238 1.4445 32 1 7.0516 -1.6463 1.8554 33 1 5.3099 0.0180 3.7560 34 1 7.0956 -0.1230 3.7243 35 1 7.0756 -2.1879 4.8110 36 1 5.4891 -1.6257 5.4082 37 1 6.0432 -3.8508 3.6310 38 1 4.4559 -3.2889 4.2277 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202535727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:09 Heat of formation + Delta-G solvation = -67.331610 kcal Electronic energy + Delta-G solvation = -18558.470425 eV Core-core repulsion = 15820.329449 eV Total energy + Delta-G solvation = -2738.140976 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.84211 -38.78205 -36.46801 -34.57883 -33.74675 -31.65363 -29.27507 -29.01987 -28.01382 -25.82439 -22.92208 -21.50336 -21.00982 -20.50275 -18.74291 -18.46265 -16.83602 -16.66092 -16.18213 -15.84140 -15.37527 -15.17089 -14.85831 -14.41904 -13.85929 -13.62441 -13.57551 -13.07388 -12.98341 -12.93329 -12.63953 -12.50595 -12.22835 -12.08483 -11.83021 -11.80496 -11.69707 -11.31104 -11.13241 -11.09376 -10.65770 -10.35527 -9.84174 -9.10090 -8.02892 -6.08910 1.32290 1.35547 1.46573 2.27544 2.44219 2.80464 3.24278 3.87936 4.06514 4.14048 4.18378 4.27470 4.30398 4.42731 4.80105 4.83593 4.84498 4.97048 5.00192 5.03192 5.11166 5.14244 5.21512 5.28626 5.32561 5.40503 5.43837 5.44693 5.66608 5.77144 5.87489 5.96333 6.31505 6.47162 6.65545 6.89350 7.53583 7.74001 8.27470 8.98456 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.017561 B = 0.010898 C = 0.007782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.081596 B = 2568.759508 C = 3597.225517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.149 3.851 3 C -0.151 4.151 4 N -0.746 5.746 5 C 0.695 3.305 6 O -0.635 6.635 7 N -0.697 5.697 8 C 0.304 3.696 9 C -0.510 4.510 10 H 0.025 0.975 11 C 0.039 3.961 12 N -0.891 5.891 13 Si 0.928 3.072 14 H -0.270 1.270 15 H -0.285 1.285 16 H -0.292 1.292 17 C -0.124 4.124 18 C -0.110 4.110 19 C -0.118 4.118 20 C -0.090 4.090 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.026 0.974 28 H 0.400 0.600 29 H 0.384 0.616 30 H 0.257 0.743 31 H 0.040 0.960 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.041 0.959 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 9.497 3.947 11.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.044 3.956 3 C -0.209 4.209 4 N -0.404 5.404 5 C 0.395 3.605 6 O -0.517 6.517 7 N -0.347 5.347 8 C 0.219 3.781 9 C -0.550 4.550 10 H 0.044 0.956 11 C -0.162 4.162 12 N -0.530 5.530 13 Si 0.756 3.244 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.218 1.218 17 C -0.163 4.163 18 C -0.147 4.147 19 C -0.156 4.156 20 C -0.129 4.129 21 H 0.097 0.903 22 H 0.106 0.894 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.045 0.955 28 H 0.235 0.765 29 H 0.217 0.783 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.892 9.445 3.090 11.076 hybrid contribution -0.323 -1.242 -0.531 1.389 sum -5.215 8.203 2.559 10.052 Atomic orbital electron populations 1.21979 0.91719 1.02446 1.04179 1.20763 0.95300 0.92427 0.87098 1.22099 1.00057 0.95740 1.03021 1.45254 1.16944 1.60677 1.17499 1.16245 0.81778 0.78681 0.83800 1.90776 1.58779 1.67572 1.34554 1.45377 1.15546 1.58523 1.15304 1.18486 0.77873 0.88774 0.92943 1.21430 1.15738 1.04895 1.12899 0.95615 1.25307 0.94854 0.98984 0.97087 1.69955 1.24935 1.25595 1.32534 0.86034 0.77295 0.79859 0.81200 1.19575 1.21035 1.21848 1.22725 0.98671 0.98221 0.96690 1.22266 1.01129 0.97228 0.94100 1.22195 1.00561 0.94925 0.97889 1.22040 0.99112 0.96830 0.94897 0.90330 0.89432 0.93018 0.93653 0.90170 0.91152 0.95455 0.76533 0.78346 0.93433 0.94147 0.93305 0.92229 0.91041 0.91651 0.90959 0.93973 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.38 71.98 0.68 -2.41 16 2 C 0.15 4.58 3.18 44.99 0.14 4.72 16 3 C -0.15 -4.05 9.48 71.98 0.68 -3.36 16 4 N -0.75 -26.22 5.08 -457.81 -2.33 -28.55 16 5 C 0.69 32.23 7.83 179.05 1.40 33.63 16 6 O -0.64 -35.39 13.70 -3.99 -0.05 -35.45 16 7 N -0.70 -31.44 4.45 -436.50 -1.94 -33.39 16 8 C 0.30 14.72 0.32 3.93 0.00 14.72 16 9 C -0.51 -29.29 6.73 25.60 0.17 -29.12 16 10 H 0.03 1.58 7.78 -2.91 -0.02 1.56 16 11 C 0.04 2.18 5.28 84.65 0.45 2.62 16 12 N -0.89 -48.79 11.96 21.45 0.26 -48.54 16 13 Si 0.93 46.56 29.54 68.60 2.03 48.59 16 14 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 15 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 16 H -0.29 -15.45 7.11 99.48 0.71 -14.75 16 17 C -0.12 -5.56 5.67 31.88 0.18 -5.38 16 18 C -0.11 -3.77 6.79 31.67 0.22 -3.56 16 19 C -0.12 -3.95 6.80 31.32 0.21 -3.74 16 20 C -0.09 -3.88 5.16 31.32 0.16 -3.72 16 21 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 22 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.05 1.72 7.58 -2.39 -0.02 1.71 16 25 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.40 11.51 8.62 -92.71 -0.80 10.71 16 29 H 0.38 15.71 8.29 -92.71 -0.77 14.94 16 30 H 0.26 13.64 8.32 -92.70 -0.77 12.86 16 31 H 0.04 1.97 6.41 -2.39 -0.02 1.96 16 32 H 0.05 2.23 8.05 -2.39 -0.02 2.21 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.04 1.98 7.83 -2.39 -0.02 1.96 16 38 H 0.05 2.36 7.57 -2.39 -0.02 2.35 16 Total: -1.00 -68.35 304.56 1.73 -66.62 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: -0.52 Total: 26.30 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 4.29 Total: 4.41 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -4.01 Total: -110.48 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -0.05 Total: -35.45 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -68.35 1.73 -66.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202535727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.714 kcal (2) G-P(sol) polarization free energy of solvation -68.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds