Wall clock time and date at job start Sun Mar 29 2020 22:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47475 * 2 1 4 4 N 1.46897 * 109.47256 * 183.65901 * 3 2 1 5 5 C 1.46898 * 111.00377 * 62.90772 * 4 3 2 6 6 C 1.50701 * 109.47264 * 69.97179 * 5 4 3 7 7 H 1.08001 * 119.99606 * 5.19725 * 6 5 4 8 8 C 1.37870 * 120.00217 * 185.19775 * 6 5 4 9 9 N 1.31516 * 120.00142 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00221 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46977 * 89.99751 * 10 8 6 12 12 H 1.48500 * 109.47195 * 210.00014 * 10 8 6 13 13 H 1.48502 * 109.46738 * 330.00164 * 10 8 6 14 14 C 1.46905 * 110.99913 * 298.95687 * 4 3 2 15 15 C 1.53006 * 109.46815 * 278.92702 * 14 4 3 16 16 H 1.08995 * 110.21996 * 299.87291 * 15 14 4 17 17 C 1.54482 * 110.24248 * 177.94121 * 15 14 4 18 18 C 1.54626 * 101.76795 * 266.41407 * 17 15 14 19 19 C 1.51278 * 104.19620 * 335.20656 * 18 17 15 20 20 O 1.21277 * 124.94270 * 196.22980 * 19 18 17 21 21 N 1.34423 * 110.11764 * 16.49506 * 19 18 17 22 22 H 1.09001 * 109.46583 * 60.00147 * 1 2 3 23 23 H 1.08994 * 109.47184 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46624 * 300.00247 * 1 2 3 25 25 H 1.09002 * 109.47059 * 239.99872 * 2 1 3 26 26 H 1.09002 * 109.47107 * 119.99897 * 2 1 3 27 27 H 1.09000 * 109.47520 * 63.65062 * 3 2 1 28 28 H 1.09001 * 109.46508 * 303.65248 * 3 2 1 29 29 H 1.09004 * 109.47422 * 189.96674 * 5 4 3 30 30 H 1.08998 * 109.46990 * 309.96988 * 5 4 3 31 31 H 0.96998 * 120.00603 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47258 * 158.92864 * 14 4 3 33 33 H 1.09000 * 109.47179 * 38.92108 * 14 4 3 34 34 H 1.09007 * 110.96285 * 148.29638 * 17 15 14 35 35 H 1.09000 * 110.97224 * 24.54145 * 17 15 14 36 36 H 1.08995 * 110.48819 * 216.52422 * 18 17 15 37 37 H 1.08997 * 110.59466 * 93.93706 * 18 17 15 38 38 H 0.97001 * 124.35201 * 180.16546 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5064 1.4433 -0.0884 5 6 3.9581 0.8452 -1.3518 6 6 3.6139 1.7654 -2.4946 7 1 3.1866 2.7370 -2.2955 8 6 3.8446 1.3668 -3.7941 9 7 3.5438 2.1696 -4.7914 10 14 4.5845 -0.3136 -4.1383 11 1 3.4959 -1.3125 -4.2877 12 1 5.3799 -0.2570 -5.3911 13 1 5.4658 -0.7069 -3.0097 14 6 4.1036 0.7543 1.0634 15 6 4.1489 1.7066 2.2601 16 1 4.7498 2.5839 2.0209 17 6 4.7269 0.9837 3.4969 18 6 3.4431 0.4822 4.1977 19 6 2.3659 1.4324 3.7230 20 8 1.2782 1.5649 4.2427 21 7 2.7877 2.1045 2.6379 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7312 1.9371 0.9209 28 1 1.6243 1.9748 -0.8555 29 1 5.0373 0.6961 -1.3178 30 1 3.4630 -0.1150 -1.4966 31 1 3.7065 1.8894 -5.7057 32 1 5.1160 0.4377 0.8125 33 1 3.5021 -0.1188 1.3164 34 1 5.2735 1.6785 4.1347 35 1 5.3609 0.1483 3.1996 36 1 3.5523 0.5396 5.2806 37 1 3.2131 -0.5385 3.8919 38 1 2.2610 2.7689 2.1666 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202865056.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:49 Heat of formation + Delta-G solvation = -30.045245 kcal Electronic energy + Delta-G solvation = -18185.392926 eV Core-core repulsion = 15448.868808 eV Total energy + Delta-G solvation = -2736.524118 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.43737 -37.72916 -35.99947 -32.83296 -32.08421 -31.32179 -29.27843 -27.33440 -25.42616 -23.43478 -22.12290 -21.00374 -20.35688 -19.42070 -17.34554 -16.77747 -15.81506 -15.45286 -14.95697 -14.73436 -14.13174 -13.99699 -13.63370 -13.46001 -13.18868 -12.68280 -12.66219 -12.43497 -11.96867 -11.53557 -11.40804 -11.33629 -11.08835 -10.96515 -10.78454 -10.67444 -10.46012 -9.97642 -9.88445 -9.67724 -9.37024 -8.80856 -8.60442 -7.38036 -6.08584 -4.05578 2.70169 3.23586 3.32156 3.32303 3.52034 4.29510 4.37754 4.44687 4.73695 4.84113 5.18799 5.24602 5.31794 5.41678 5.45103 5.54698 5.56652 5.70686 5.77502 5.84823 5.89528 6.03159 6.06088 6.27640 6.30087 6.45550 6.48741 6.76326 6.91059 6.93289 6.99783 7.19301 7.57056 7.82757 7.97866 8.37321 8.61935 9.01181 9.53375 11.04700 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030404 B = 0.006827 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.709359 B = 4100.418889 C = 4464.897172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.161 4.161 3 C 0.057 3.943 4 N -0.523 5.523 5 C 0.159 3.841 6 C -0.506 4.506 7 H 0.080 0.920 8 C 0.068 3.932 9 N -0.900 5.900 10 Si 0.873 3.127 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.031 3.969 15 C 0.137 3.863 16 H 0.096 0.904 17 C -0.128 4.128 18 C -0.157 4.157 19 C 0.515 3.485 20 O -0.548 6.548 21 N -0.713 5.713 22 H 0.057 0.943 23 H 0.045 0.955 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.025 0.975 30 H -0.008 1.008 31 H 0.263 0.737 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.084 -4.628 14.553 15.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.200 4.200 3 C -0.072 4.072 4 N -0.245 5.245 5 C 0.033 3.967 6 C -0.545 4.545 7 H 0.098 0.902 8 C -0.133 4.133 9 N -0.539 5.539 10 Si 0.701 3.299 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.099 4.099 15 C 0.031 3.969 16 H 0.114 0.886 17 C -0.167 4.167 18 C -0.197 4.197 19 C 0.301 3.699 20 O -0.426 6.426 21 N -0.371 5.371 22 H 0.076 0.924 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.043 0.957 30 H 0.010 0.990 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 1.769 -4.115 14.669 15.338 hybrid contribution -0.028 -1.546 -0.745 1.716 sum 1.742 -5.661 13.925 15.132 Atomic orbital electron populations 1.21646 0.96075 1.00838 1.01628 1.22130 0.96114 1.00316 1.01398 1.22356 0.88076 0.94791 1.01986 1.62156 1.06721 1.53664 1.01966 1.20277 0.95108 0.93945 0.87389 1.21001 1.41621 1.03297 0.88544 0.90200 1.24897 0.95350 0.96851 0.96225 1.69888 1.48506 1.36410 0.99081 0.86896 0.79772 0.85219 0.78021 1.20423 1.21172 1.19312 1.22650 1.00330 0.94975 0.91918 1.21790 0.82702 0.98789 0.93623 0.88603 1.22637 0.96756 1.01113 0.96161 1.22323 0.94724 1.00207 1.02441 1.20900 0.87632 0.81232 0.80159 1.90729 1.23390 1.68022 1.60460 1.46651 1.18044 1.42535 1.29825 0.92429 0.93603 0.93230 0.91249 0.93166 0.91868 0.89686 0.95748 0.99041 0.92677 0.90420 0.94174 0.89931 0.89171 0.88484 0.88180 0.74352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.91 37.16 0.37 -1.84 16 2 C -0.16 -2.72 5.35 -26.73 -0.14 -2.87 16 3 C 0.06 1.01 5.00 -3.83 -0.02 0.99 16 4 N -0.52 -9.79 4.57 -236.07 -1.08 -10.87 16 5 C 0.16 3.59 3.62 -4.98 -0.02 3.58 16 6 C -0.51 -13.81 8.99 -34.44 -0.31 -14.12 16 7 H 0.08 2.40 7.81 -52.49 -0.41 1.99 16 8 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 9 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 10 Si 0.87 20.98 27.37 -169.99 -4.65 16.32 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.14 6.69 56.52 0.38 -5.76 16 14 C 0.03 0.45 4.65 -3.82 -0.02 0.43 16 15 C 0.14 1.60 3.79 -67.01 -0.25 1.35 16 16 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 17 C -0.13 -1.10 6.70 -25.10 -0.17 -1.27 16 18 C -0.16 -1.56 6.86 -26.74 -0.18 -1.74 16 19 C 0.51 7.18 8.43 -10.86 -0.09 7.09 16 20 O -0.55 -9.85 18.03 5.56 0.10 -9.75 16 21 N -0.71 -9.29 4.32 -52.76 -0.23 -9.52 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 1.33 6.10 -51.93 -0.32 1.01 16 26 H 0.05 0.80 6.23 -51.93 -0.32 0.48 16 27 H 0.06 1.02 4.41 -51.93 -0.23 0.79 16 28 H 0.08 1.77 7.18 -51.93 -0.37 1.39 16 29 H 0.02 0.56 7.11 -51.93 -0.37 0.19 16 30 H -0.01 -0.18 5.02 -51.93 -0.26 -0.44 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.08 1.08 7.58 -51.93 -0.39 0.69 16 33 H 0.04 0.58 5.63 -51.93 -0.29 0.29 16 34 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.09 0.66 7.89 -51.93 -0.41 0.25 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.41 5.61 7.02 -40.82 -0.29 5.32 16 LS Contribution 295.19 15.07 4.45 4.45 Total: -1.00 -31.45 295.19 -7.35 -38.80 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.78 Total: 3.42 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -0.93 Total: -6.57 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -0.53 Total: -46.68 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.10 Total: -9.75 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.65 Total: 16.32 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.45 -7.35 -38.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202865056.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.759 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds