Wall clock time and date at job start Sun Mar 29 2020 22:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47475 * 2 1 4 4 N 1.46897 * 109.47256 * 183.65901 * 3 2 1 5 5 C 1.46898 * 111.00377 * 62.90772 * 4 3 2 6 6 C 1.50701 * 109.47264 * 69.97179 * 5 4 3 7 7 H 1.08001 * 119.99606 * 5.19725 * 6 5 4 8 8 C 1.37870 * 120.00217 * 185.19775 * 6 5 4 9 9 N 1.31516 * 120.00142 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00221 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46977 * 89.99751 * 10 8 6 12 12 H 1.48500 * 109.47195 * 210.00014 * 10 8 6 13 13 H 1.48502 * 109.46738 * 330.00164 * 10 8 6 14 14 C 1.46905 * 110.99913 * 298.95687 * 4 3 2 15 15 C 1.53006 * 109.46815 * 278.92702 * 14 4 3 16 16 H 1.08995 * 110.21996 * 299.87291 * 15 14 4 17 17 C 1.54482 * 110.24248 * 177.94121 * 15 14 4 18 18 C 1.54626 * 101.76795 * 266.41407 * 17 15 14 19 19 C 1.51278 * 104.19620 * 335.20656 * 18 17 15 20 20 O 1.21277 * 124.94270 * 196.22980 * 19 18 17 21 21 N 1.34423 * 110.11764 * 16.49506 * 19 18 17 22 22 H 1.09001 * 109.46583 * 60.00147 * 1 2 3 23 23 H 1.08994 * 109.47184 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46624 * 300.00247 * 1 2 3 25 25 H 1.09002 * 109.47059 * 239.99872 * 2 1 3 26 26 H 1.09002 * 109.47107 * 119.99897 * 2 1 3 27 27 H 1.09000 * 109.47520 * 63.65062 * 3 2 1 28 28 H 1.09001 * 109.46508 * 303.65248 * 3 2 1 29 29 H 1.09004 * 109.47422 * 189.96674 * 5 4 3 30 30 H 1.08998 * 109.46990 * 309.96988 * 5 4 3 31 31 H 0.96998 * 120.00603 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47258 * 158.92864 * 14 4 3 33 33 H 1.09000 * 109.47179 * 38.92108 * 14 4 3 34 34 H 1.09007 * 110.96285 * 148.29638 * 17 15 14 35 35 H 1.09000 * 110.97224 * 24.54145 * 17 15 14 36 36 H 1.08995 * 110.48819 * 216.52422 * 18 17 15 37 37 H 1.08997 * 110.59466 * 93.93706 * 18 17 15 38 38 H 0.97001 * 124.35201 * 180.16546 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5064 1.4433 -0.0884 5 6 3.9581 0.8452 -1.3518 6 6 3.6139 1.7654 -2.4946 7 1 3.1866 2.7370 -2.2955 8 6 3.8446 1.3668 -3.7941 9 7 3.5438 2.1696 -4.7914 10 14 4.5845 -0.3136 -4.1383 11 1 3.4959 -1.3125 -4.2877 12 1 5.3799 -0.2570 -5.3911 13 1 5.4658 -0.7069 -3.0097 14 6 4.1036 0.7543 1.0634 15 6 4.1489 1.7066 2.2601 16 1 4.7498 2.5839 2.0209 17 6 4.7269 0.9837 3.4969 18 6 3.4431 0.4822 4.1977 19 6 2.3659 1.4324 3.7230 20 8 1.2782 1.5649 4.2427 21 7 2.7877 2.1045 2.6379 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7312 1.9371 0.9209 28 1 1.6243 1.9748 -0.8555 29 1 5.0373 0.6961 -1.3178 30 1 3.4630 -0.1150 -1.4966 31 1 3.7065 1.8894 -5.7057 32 1 5.1160 0.4377 0.8125 33 1 3.5021 -0.1188 1.3164 34 1 5.2735 1.6785 4.1347 35 1 5.3609 0.1483 3.1996 36 1 3.5523 0.5396 5.2806 37 1 3.2131 -0.5385 3.8919 38 1 2.2610 2.7689 2.1666 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202865056.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:49 Heat of formation + Delta-G solvation = -53.280332 kcal Electronic energy + Delta-G solvation = -18186.400475 eV Core-core repulsion = 15448.868808 eV Total energy + Delta-G solvation = -2737.531667 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.48698 -39.11529 -37.20052 -34.78291 -33.61579 -32.20491 -30.74440 -28.88210 -26.69952 -24.84355 -23.66382 -22.03883 -21.35843 -20.92297 -18.84428 -18.40494 -16.97268 -16.72924 -16.34484 -16.28470 -15.68442 -15.37242 -14.84488 -14.65367 -14.50856 -14.21437 -13.81115 -13.51765 -13.41871 -12.95364 -12.80383 -12.63143 -12.53780 -12.27390 -12.19331 -11.99543 -11.80434 -11.73008 -11.40237 -11.31775 -10.82600 -10.74095 -9.99112 -8.86147 -8.25747 -6.27775 1.34837 1.36008 1.46665 1.64631 2.35320 2.50429 3.08700 3.16267 3.56581 3.79101 4.00249 4.03574 4.08668 4.23401 4.39803 4.43275 4.55488 4.59209 4.68318 4.75504 4.85861 4.91734 4.97171 5.08735 5.08910 5.15914 5.19151 5.24381 5.31785 5.41312 5.59817 5.88750 6.02884 6.16539 6.40500 6.71041 6.79478 7.29582 7.35660 8.91295 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030404 B = 0.006827 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.709359 B = 4100.418889 C = 4464.897172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.154 4.154 3 C 0.062 3.938 4 N -0.536 5.536 5 C 0.169 3.831 6 C -0.508 4.508 7 H 0.033 0.967 8 C 0.005 3.995 9 N -0.951 5.951 10 Si 0.944 3.056 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.242 1.242 14 C 0.030 3.970 15 C 0.137 3.863 16 H 0.097 0.903 17 C -0.113 4.113 18 C -0.149 4.149 19 C 0.506 3.494 20 O -0.596 6.596 21 N -0.715 5.715 22 H 0.044 0.956 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.032 0.968 30 H -0.005 1.005 31 H 0.265 0.735 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.789 -6.942 16.589 18.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.193 4.193 3 C -0.066 4.066 4 N -0.258 5.258 5 C 0.042 3.958 6 C -0.547 4.547 7 H 0.052 0.948 8 C -0.191 4.191 9 N -0.593 5.593 10 Si 0.768 3.232 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.166 1.166 14 C -0.099 4.099 15 C 0.032 3.968 16 H 0.115 0.885 17 C -0.151 4.151 18 C -0.189 4.189 19 C 0.294 3.706 20 O -0.478 6.478 21 N -0.370 5.370 22 H 0.064 0.936 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.012 0.988 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.121 0.879 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.504 -6.433 16.732 18.265 hybrid contribution -0.612 -0.700 -1.354 1.642 sum 2.893 -7.133 15.378 17.197 Atomic orbital electron populations 1.21612 0.94963 1.01910 1.01345 1.22051 0.97127 0.99099 1.01053 1.22250 0.87890 0.95455 1.01051 1.62031 1.07143 1.54576 1.02066 1.20028 0.95331 0.92799 0.87666 1.21270 1.40521 1.02317 0.90575 0.94845 1.25842 0.96026 1.01330 0.95937 1.70060 1.50577 1.38998 0.99639 0.85761 0.79268 0.79642 0.78541 1.19874 1.21054 1.16568 1.22807 1.00635 0.95549 0.90874 1.21872 0.82106 0.98702 0.94147 0.88489 1.22671 0.96298 1.01885 0.94214 1.22372 0.93447 0.99449 1.03641 1.21653 0.87764 0.81407 0.79758 1.90702 1.25675 1.69576 1.61802 1.46799 1.18604 1.42051 1.29560 0.93635 0.91840 0.92613 0.93424 0.91376 0.90006 0.93790 0.95016 0.98765 0.92656 0.89103 0.93489 0.87897 0.86798 0.86696 0.87011 0.75286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 9.91 71.98 0.71 -3.47 16 2 C -0.15 -5.08 5.35 30.59 0.16 -4.92 16 3 C 0.06 2.25 5.00 86.30 0.43 2.68 16 4 N -0.54 -19.68 4.57 -900.78 -4.12 -23.79 16 5 C 0.17 7.50 3.62 85.56 0.31 7.81 16 6 C -0.51 -28.54 8.99 25.60 0.23 -28.31 16 7 H 0.03 2.13 7.81 -2.91 -0.02 2.10 16 8 C 0.01 0.31 5.47 84.65 0.46 0.77 16 9 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 10 Si 0.94 42.98 27.37 68.60 1.88 44.86 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 H -0.24 -9.94 6.69 99.48 0.67 -9.28 16 14 C 0.03 0.78 4.65 86.30 0.40 1.19 16 15 C 0.14 2.81 3.79 45.45 0.17 2.98 16 16 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 17 C -0.11 -1.41 6.70 31.65 0.21 -1.20 16 18 C -0.15 -2.37 6.86 30.59 0.21 -2.17 16 19 C 0.51 13.13 8.43 87.90 0.74 13.87 16 20 O -0.60 -20.98 18.03 -3.02 -0.05 -21.04 16 21 N -0.72 -17.48 4.32 -439.43 -1.90 -19.38 16 22 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.05 1.78 6.10 -2.39 -0.01 1.76 16 26 H 0.07 2.00 6.23 -2.39 -0.01 1.98 16 27 H 0.08 2.64 4.41 -2.39 -0.01 2.63 16 28 H 0.04 1.93 7.18 -2.39 -0.02 1.91 16 29 H 0.03 1.38 7.11 -2.39 -0.02 1.36 16 30 H -0.01 -0.23 5.02 -2.39 -0.01 -0.24 16 31 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 32 H 0.09 2.17 7.58 -2.39 -0.02 2.15 16 33 H 0.05 1.18 5.63 -2.39 -0.01 1.17 16 34 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.11 0.99 7.89 -2.39 -0.02 0.97 16 36 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.41 10.86 7.02 -92.71 -0.65 10.21 16 Total: -1.00 -71.17 295.19 0.52 -70.65 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.36 Total: 18.38 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 4.05 Total: -10.77 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -5.71 Total: -102.09 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.05 Total: -21.04 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.86 kcal Total: -71.17 0.52 -70.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202865056.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.372 kcal (2) G-P(sol) polarization free energy of solvation -71.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds