Wall clock time and date at job start Sun Mar 29 2020 22:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.53894 * 2 1 4 4 C 1.53036 * 109.50295 * 239.90529 * 2 1 3 5 5 N 1.46846 * 109.52162 * 299.23661 * 4 2 1 6 6 C 1.46846 * 111.19997 * 298.26076 * 5 4 2 7 7 C 1.53030 * 109.52377 * 61.74000 * 6 5 4 8 8 H 1.09003 * 109.50540 * 60.76497 * 7 6 5 9 9 C 1.53005 * 109.53521 * 180.86498 * 7 6 5 10 10 N 1.46501 * 109.46786 * 294.81859 * 9 7 6 11 11 C 1.34770 * 119.99917 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00506 * 0.02562 * 11 10 9 13 13 C 1.50707 * 120.00280 * 180.02562 * 11 10 9 14 14 C 1.50700 * 109.47369 * 180.02562 * 13 11 10 15 15 H 1.07994 * 119.99698 * 0.02562 * 14 13 11 16 16 C 1.37873 * 119.99666 * 179.97438 * 14 13 11 17 17 N 1.31517 * 120.00494 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99695 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46847 * 60.00683 * 18 16 14 20 20 H 1.48494 * 109.47086 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47500 * 300.00538 * 18 16 14 22 22 C 1.53118 * 109.50577 * 120.09881 * 2 1 3 23 23 H 1.08992 * 109.47531 * 180.09563 * 1 2 3 24 24 H 1.09007 * 109.47187 * 300.10155 * 1 2 3 25 25 H 1.09005 * 109.47404 * 60.09405 * 1 2 3 26 26 H 1.08998 * 109.46728 * 179.22484 * 4 2 1 27 27 H 1.09004 * 109.46553 * 59.25369 * 4 2 1 28 28 H 1.00904 * 111.00089 * 62.35801 * 5 4 2 29 29 H 1.08999 * 109.46373 * 181.76104 * 6 5 4 30 30 H 1.08998 * 109.45881 * 301.72191 * 6 5 4 31 31 H 1.08999 * 109.47236 * 54.82058 * 9 7 6 32 32 H 1.09000 * 109.46745 * 174.82520 * 9 7 6 33 33 H 0.97005 * 120.00083 * 0.02562 * 10 9 7 34 34 H 1.08999 * 109.47059 * 300.00327 * 13 11 10 35 35 H 1.08997 * 109.47011 * 60.00020 * 13 11 10 36 36 H 0.96993 * 120.00093 * 179.97438 * 17 16 14 37 37 H 1.08993 * 109.52399 * 182.18964 * 22 2 1 38 38 H 1.08997 * 109.52156 * 302.32014 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0409 -0.7233 -1.2481 5 7 1.5675 -2.1134 -1.2380 6 6 2.0845 -2.8419 -0.0725 7 6 1.5749 -2.1818 1.2106 8 1 0.4856 -2.2161 1.2297 9 6 2.1309 -2.9277 2.4253 10 7 1.5886 -4.2884 2.4531 11 6 1.9421 -5.1347 3.4405 12 8 2.7088 -4.7698 4.3065 13 6 1.3847 -6.5346 3.4688 14 6 1.9322 -7.2693 4.6653 15 1 2.6151 -6.7721 5.3382 16 6 1.5604 -8.5758 4.9014 17 7 0.7284 -9.1811 4.0822 18 14 2.2396 -9.4867 6.3841 19 1 1.8482 -8.7724 7.6258 20 1 1.6893 -10.8656 6.4127 21 1 3.7206 -9.5459 6.2931 22 6 2.0412 -0.7238 1.2487 23 1 -0.3634 -1.0276 0.0017 24 1 -0.3634 0.5154 0.8891 25 1 -0.3634 0.5124 -0.8908 26 1 3.1308 -0.7110 -1.2545 27 1 1.6669 -0.2188 -2.1390 28 1 0.5597 -2.1524 -1.2709 29 1 1.7422 -3.8761 -0.1096 30 1 3.1742 -2.8196 -0.0844 31 1 3.2180 -2.9711 2.3588 32 1 1.8432 -2.4033 3.3366 33 1 0.9756 -4.5804 1.7602 34 1 0.2976 -6.4916 3.5354 35 1 1.6724 -7.0586 2.5573 36 1 0.4672 -10.1003 4.2481 37 1 3.1304 -0.6901 1.2689 38 1 1.6451 -0.2369 2.1398 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219641310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:27 Heat of formation + Delta-G solvation = -63.372697 kcal Electronic energy + Delta-G solvation = -17328.156899 eV Core-core repulsion = 14590.187595 eV Total energy + Delta-G solvation = -2737.969304 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.89608 -38.39483 -34.70126 -32.89747 -32.75158 -31.52804 -28.89331 -27.14513 -25.75076 -23.76481 -23.28335 -21.27932 -19.85895 -19.10038 -16.44476 -16.34044 -15.79775 -15.67291 -15.13731 -14.73979 -14.48263 -14.33875 -14.09810 -13.64916 -12.81435 -12.70188 -12.41347 -12.27098 -12.04840 -11.75947 -11.70267 -11.47823 -11.31306 -11.06219 -10.81368 -10.65112 -10.56091 -10.44346 -9.93379 -9.26350 -8.62463 -8.55775 -8.43487 -8.35434 -6.03551 -4.03005 3.38986 3.40891 3.46419 3.75632 3.90477 4.10723 4.48629 4.51380 4.52509 4.68880 4.79503 5.00745 5.11643 5.24947 5.31961 5.34595 5.37004 5.47341 5.58444 5.67232 5.77997 5.80163 5.87563 5.92368 5.97518 6.01462 6.21037 6.41754 6.82406 7.06978 7.18897 7.21908 7.35531 7.98086 8.08311 8.46861 9.07614 9.26703 9.62033 11.08869 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.054986 B = 0.004158 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.095877 B = 6731.698039 C = 6930.092674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 H 0.074 0.926 4 C 0.060 3.940 5 N -0.685 5.685 6 C 0.060 3.940 7 C -0.136 4.136 8 H 0.077 0.923 9 C 0.129 3.871 10 N -0.749 5.749 11 C 0.513 3.487 12 O -0.547 6.547 13 C 0.005 3.995 14 C -0.508 4.508 15 H 0.074 0.926 16 C 0.055 3.945 17 N -0.902 5.902 18 Si 0.902 3.098 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.107 4.107 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.340 0.660 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.394 0.606 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.262 0.738 37 H 0.066 0.934 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.177 17.340 -11.376 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 H 0.092 0.908 4 C -0.070 4.070 5 N -0.313 5.313 6 C -0.069 4.069 7 C -0.156 4.156 8 H 0.096 0.904 9 C 0.004 3.996 10 N -0.404 5.404 11 C 0.303 3.697 12 O -0.424 6.424 13 C -0.034 4.034 14 C -0.547 4.547 15 H 0.092 0.908 16 C -0.146 4.146 17 N -0.541 5.541 18 Si 0.730 3.270 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.145 4.145 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.158 0.842 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.228 0.772 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.192 17.189 -11.200 20.517 hybrid contribution -0.594 -0.211 1.185 1.342 sum -0.787 16.977 -10.015 19.727 Atomic orbital electron populations 1.21891 0.95166 1.01956 1.01836 1.21823 0.96333 1.00194 0.96692 0.90782 1.22058 1.00501 0.88162 0.96234 1.60681 1.15500 1.13402 1.41691 1.22123 1.00694 0.97613 0.86498 1.22145 1.01232 0.95698 0.96561 0.90433 1.21129 0.98330 0.83434 0.96714 1.46327 1.50796 1.12904 1.30332 1.22006 0.79949 0.88475 0.79237 1.90531 1.35732 1.78168 1.37930 1.19231 0.97782 0.86433 0.99981 1.21133 1.27555 0.96798 1.09198 0.90783 1.25005 0.95162 0.97471 0.96959 1.69949 1.34146 1.12687 1.37354 0.86486 0.79364 0.78293 0.82878 1.20155 1.21360 1.20120 1.21561 1.01033 0.94286 0.97646 0.92462 0.92487 0.92647 0.90939 0.90908 0.84161 0.90215 0.90674 0.92193 0.92355 0.77205 0.93553 0.93469 0.92871 0.91524 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.58 37.16 0.32 -0.79 16 2 C -0.13 -1.00 3.21 -90.54 -0.29 -1.30 16 3 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 4 C 0.06 0.49 6.06 -3.84 -0.02 0.47 16 5 N -0.68 -6.40 6.80 -113.82 -0.77 -7.17 16 6 C 0.06 0.63 5.70 -3.84 -0.02 0.61 16 7 C -0.14 -1.42 2.02 -90.54 -0.18 -1.60 16 8 H 0.08 0.80 6.58 -51.93 -0.34 0.46 16 9 C 0.13 1.86 5.07 -4.04 -0.02 1.84 16 10 N -0.75 -12.70 5.29 -60.29 -0.32 -13.02 16 11 C 0.51 11.81 7.82 -10.98 -0.09 11.72 16 12 O -0.55 -14.54 15.46 5.56 0.09 -14.45 16 13 C 0.00 0.13 5.46 -29.03 -0.16 -0.03 16 14 C -0.51 -14.96 8.92 -34.44 -0.31 -15.27 16 15 H 0.07 2.27 6.75 -52.49 -0.35 1.92 16 16 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 18 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 C -0.11 -0.99 4.79 -26.61 -0.13 -1.11 16 23 H 0.06 0.44 5.12 -51.93 -0.27 0.17 16 24 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.34 2.88 7.15 -39.29 -0.28 2.60 16 29 H 0.08 0.88 7.22 -51.93 -0.37 0.50 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.39 5.68 7.67 -40.82 -0.31 5.36 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 301.29 15.07 4.54 4.54 Total: -1.00 -32.36 301.29 -7.89 -40.25 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.14 Total: 2.41 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -1.00 Total: -3.98 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.36 Total: -46.11 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.09 Total: -14.45 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.36 -7.89 -40.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219641310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.127 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds