Wall clock time and date at job start Sun Mar 29 2020 22:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.53894 * 2 1 4 4 C 1.53036 * 109.50295 * 239.90529 * 2 1 3 5 5 N 1.46846 * 109.52162 * 299.23661 * 4 2 1 6 6 C 1.46846 * 111.19997 * 298.26076 * 5 4 2 7 7 C 1.53030 * 109.52377 * 61.74000 * 6 5 4 8 8 H 1.09003 * 109.50540 * 60.76497 * 7 6 5 9 9 C 1.53005 * 109.53521 * 180.86498 * 7 6 5 10 10 N 1.46501 * 109.46786 * 294.81859 * 9 7 6 11 11 C 1.34770 * 119.99917 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00506 * 0.02562 * 11 10 9 13 13 C 1.50707 * 120.00280 * 180.02562 * 11 10 9 14 14 C 1.50700 * 109.47369 * 180.02562 * 13 11 10 15 15 H 1.07994 * 119.99698 * 0.02562 * 14 13 11 16 16 C 1.37873 * 119.99666 * 179.97438 * 14 13 11 17 17 N 1.31517 * 120.00494 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99695 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46847 * 60.00683 * 18 16 14 20 20 H 1.48494 * 109.47086 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47500 * 300.00538 * 18 16 14 22 22 C 1.53118 * 109.50577 * 120.09881 * 2 1 3 23 23 H 1.08992 * 109.47531 * 180.09563 * 1 2 3 24 24 H 1.09007 * 109.47187 * 300.10155 * 1 2 3 25 25 H 1.09005 * 109.47404 * 60.09405 * 1 2 3 26 26 H 1.08998 * 109.46728 * 179.22484 * 4 2 1 27 27 H 1.09004 * 109.46553 * 59.25369 * 4 2 1 28 28 H 1.00904 * 111.00089 * 62.35801 * 5 4 2 29 29 H 1.08999 * 109.46373 * 181.76104 * 6 5 4 30 30 H 1.08998 * 109.45881 * 301.72191 * 6 5 4 31 31 H 1.08999 * 109.47236 * 54.82058 * 9 7 6 32 32 H 1.09000 * 109.46745 * 174.82520 * 9 7 6 33 33 H 0.97005 * 120.00083 * 0.02562 * 10 9 7 34 34 H 1.08999 * 109.47059 * 300.00327 * 13 11 10 35 35 H 1.08997 * 109.47011 * 60.00020 * 13 11 10 36 36 H 0.96993 * 120.00093 * 179.97438 * 17 16 14 37 37 H 1.08993 * 109.52399 * 182.18964 * 22 2 1 38 38 H 1.08997 * 109.52156 * 302.32014 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0409 -0.7233 -1.2481 5 7 1.5675 -2.1134 -1.2380 6 6 2.0845 -2.8419 -0.0725 7 6 1.5749 -2.1818 1.2106 8 1 0.4856 -2.2161 1.2297 9 6 2.1309 -2.9277 2.4253 10 7 1.5886 -4.2884 2.4531 11 6 1.9421 -5.1347 3.4405 12 8 2.7088 -4.7698 4.3065 13 6 1.3847 -6.5346 3.4688 14 6 1.9322 -7.2693 4.6653 15 1 2.6151 -6.7721 5.3382 16 6 1.5604 -8.5758 4.9014 17 7 0.7284 -9.1811 4.0822 18 14 2.2396 -9.4867 6.3841 19 1 1.8482 -8.7724 7.6258 20 1 1.6893 -10.8656 6.4127 21 1 3.7206 -9.5459 6.2931 22 6 2.0412 -0.7238 1.2487 23 1 -0.3634 -1.0276 0.0017 24 1 -0.3634 0.5154 0.8891 25 1 -0.3634 0.5124 -0.8908 26 1 3.1308 -0.7110 -1.2545 27 1 1.6669 -0.2188 -2.1390 28 1 0.5597 -2.1524 -1.2709 29 1 1.7422 -3.8761 -0.1096 30 1 3.1742 -2.8196 -0.0844 31 1 3.2180 -2.9711 2.3588 32 1 1.8432 -2.4033 3.3366 33 1 0.9756 -4.5804 1.7602 34 1 0.2976 -6.4916 3.5354 35 1 1.6724 -7.0586 2.5573 36 1 0.4672 -10.1003 4.2481 37 1 3.1304 -0.6901 1.2689 38 1 1.6451 -0.2369 2.1398 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219641310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:27 Heat of formation + Delta-G solvation = -87.029603 kcal Electronic energy + Delta-G solvation = -17329.182740 eV Core-core repulsion = 14590.187595 eV Total energy + Delta-G solvation = -2738.995145 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.91687 -39.95923 -36.07975 -35.09139 -33.46683 -32.79363 -30.86002 -27.78169 -27.13108 -25.16737 -24.54354 -22.26015 -21.43778 -19.99473 -18.52798 -17.79760 -16.93503 -16.81321 -16.64928 -16.27459 -15.84049 -15.35662 -15.16543 -14.70363 -14.32950 -14.17603 -13.86205 -13.39308 -13.27598 -13.04424 -12.80437 -12.55808 -12.52431 -12.42675 -12.19194 -12.03973 -11.98409 -11.47556 -11.43213 -11.23285 -10.62744 -10.51482 -9.99957 -9.24481 -8.25168 -6.32604 1.40197 1.43059 1.51747 1.88912 2.33591 2.52413 3.10099 3.34308 3.69936 3.76104 3.88871 4.02954 4.18957 4.34212 4.41621 4.44842 4.54470 4.65814 4.70908 4.80092 4.86677 4.97645 5.02608 5.08718 5.11176 5.21341 5.23867 5.26075 5.26728 5.43477 5.57734 5.74032 6.05710 6.08478 6.50977 6.70495 6.83920 7.33659 7.51600 8.86792 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.054986 B = 0.004158 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.095877 B = 6731.698039 C = 6930.092674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 H 0.086 0.914 4 C 0.060 3.940 5 N -0.688 5.688 6 C 0.064 3.936 7 C -0.120 4.120 8 H 0.086 0.914 9 C 0.129 3.871 10 N -0.724 5.724 11 C 0.517 3.483 12 O -0.588 6.588 13 C 0.008 3.992 14 C -0.539 4.539 15 H 0.054 0.946 16 C 0.011 3.989 17 N -0.924 5.924 18 Si 0.964 3.036 19 H -0.273 1.273 20 H -0.273 1.273 21 H -0.272 1.272 22 C -0.107 4.107 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.347 0.653 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.410 0.590 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.268 0.732 37 H 0.063 0.937 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.577 18.156 -12.089 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.143 4.143 3 H 0.104 0.896 4 C -0.070 4.070 5 N -0.317 5.317 6 C -0.066 4.066 7 C -0.141 4.141 8 H 0.104 0.896 9 C 0.005 3.995 10 N -0.378 5.378 11 C 0.306 3.694 12 O -0.468 6.468 13 C -0.032 4.032 14 C -0.578 4.578 15 H 0.072 0.928 16 C -0.188 4.188 17 N -0.564 5.564 18 Si 0.789 3.211 19 H -0.198 1.198 20 H -0.198 1.198 21 H -0.198 1.198 22 C -0.145 4.145 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.166 0.834 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.246 0.754 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.625 18.031 -11.971 21.652 hybrid contribution -0.491 -0.419 1.337 1.484 sum -1.116 17.611 -10.635 20.603 Atomic orbital electron populations 1.21885 0.94646 1.01867 1.02378 1.21774 0.96658 1.00458 0.95414 0.89610 1.22109 1.00335 0.87500 0.97020 1.60670 1.16070 1.14225 1.40753 1.22020 1.00162 0.97511 0.86905 1.22040 1.01434 0.96072 0.94538 0.89596 1.21292 0.97941 0.81825 0.98425 1.46012 1.49758 1.13266 1.28723 1.21475 0.79647 0.88300 0.80010 1.90508 1.37665 1.78756 1.39876 1.19077 0.97372 0.88164 0.98567 1.21352 1.28113 0.97844 1.10461 0.92777 1.25786 0.95240 0.98042 0.99731 1.70020 1.34582 1.13171 1.38620 0.85517 0.78776 0.77512 0.79323 1.19783 1.19785 1.19770 1.21572 1.00970 0.93270 0.98706 0.92835 0.92606 0.91521 0.91382 0.89502 0.83404 0.90874 0.91594 0.93068 0.93148 0.75401 0.93986 0.93924 0.92355 0.91789 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.58 71.98 0.62 -1.19 16 2 C -0.12 -1.60 3.21 -10.74 -0.03 -1.63 16 3 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 4 C 0.06 0.83 6.06 86.33 0.52 1.35 16 5 N -0.69 -11.52 6.80 -514.03 -3.49 -15.01 16 6 C 0.06 1.26 5.70 86.32 0.49 1.75 16 7 C -0.12 -2.35 2.02 -10.74 -0.02 -2.37 16 8 H 0.09 1.59 6.58 -2.39 -0.02 1.57 16 9 C 0.13 3.66 5.07 86.38 0.44 4.10 16 10 N -0.72 -24.31 5.29 -463.05 -2.45 -26.76 16 11 C 0.52 24.08 7.82 87.66 0.69 24.77 16 12 O -0.59 -31.92 15.46 -3.03 -0.05 -31.97 16 13 C 0.01 0.40 5.46 29.10 0.16 0.56 16 14 C -0.54 -32.32 8.92 25.60 0.23 -32.10 16 15 H 0.05 3.41 6.75 -2.91 -0.02 3.39 16 16 C 0.01 0.62 5.46 84.65 0.46 1.08 16 17 N -0.92 -54.51 13.29 21.45 0.28 -54.22 16 18 Si 0.96 45.76 29.54 68.60 2.03 47.78 16 19 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 22 C -0.11 -1.79 4.79 30.67 0.15 -1.64 16 23 H 0.05 0.68 5.12 -2.39 -0.01 0.67 16 24 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 25 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.35 5.07 7.15 -89.69 -0.64 4.43 16 29 H 0.07 1.52 7.22 -2.39 -0.02 1.51 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.41 11.40 7.67 -92.70 -0.71 10.69 16 34 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -69.12 301.29 -0.29 -69.40 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -0.30 Total: 16.09 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 3.70 Total: -5.31 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -5.66 Total: -95.99 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.05 Total: -31.97 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -69.12 -0.29 -69.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219641310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.627 kcal (2) G-P(sol) polarization free energy of solvation -69.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds